RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 Q6ZSN1 163 aa9.33□□□□□ -0.92
VPS52-218ENST00000482399 AMELXQ99217 191 aa9.33□□□□□ -0.92
VPS52-218ENST00000482399 CELSR2Q9HCU4 2923 aa9.33□□□□□ -0.92
VPS52-218ENST00000482399 C10orf105Q8TEF2 133 aa9.33□□□□□ -0.92
VPS52-218ENST00000482399 TMEM61Q8N0U2 210 aa9.32□□□□□ -0.92
VPS52-218ENST00000482399 ZFHX3Q15911 3703 aa9.32□□□□□ -0.92
VPS52-218ENST00000482399 H3BUA1 57 aa9.32□□□□□ -0.92
VPS52-218ENST00000482399 VSIG2Q96IQ7 327 aa9.32□□□□□ -0.92
VPS52-218ENST00000482399 Q9HAA7 133 aa9.32□□□□□ -0.92
VPS52-218ENST00000482399 TRBV7-9A0A0J9YWB2 115 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 MIAQ16674 131 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 FAM19A4Q96LR4 140 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 TRGV2A0A075B6R0 118 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 FAM236AA0A1B0GUQ0 79 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 FAM236BA0A1B0GV22 79 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 K7EMT4 169 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 DNAL4O96015 105 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 NXPH4O95158 308 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 RBMY1A1P0DJD3 496 aaKnown RBP9.31□□□□□ -0.92
VPS52-218ENST00000482399 RBMY1CP0DJD4 496 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 LINC00158P58513 81 aa9.31□□□□□ -0.92
VPS52-218ENST00000482399 RBMY1FQ15415 496 aaKnown RBP9.31□□□□□ -0.92
VPS52-218ENST00000482399 PFN2P35080 140 aa9.3□□□□□ -0.92
VPS52-218ENST00000482399 PIK3CD-AS1Q5SR53 167 aa9.3□□□□□ -0.92
VPS52-218ENST00000482399 STHQ8IWL8 128 aa9.3□□□□□ -0.92
VPS52-218ENST00000482399 FBN2P35556 2912 aa9.3□□□□□ -0.92
VPS52-218ENST00000482399 IGLV1-40P01703 118 aa9.3□□□□□ -0.92
VPS52-218ENST00000482399 RPL32P62910 135 aaKnown RBP9.3□□□□□ -0.92
VPS52-218ENST00000482399 TRBV30A0A0K0K1B3 111 aa9.29□□□□□ -0.92
VPS52-218ENST00000482399 PSMB8P28062 276 aa9.28□□□□□ -0.92
VPS52-218ENST00000482399 BAALC-AS2P0C853 105 aa9.28□□□□□ -0.92
VPS52-218ENST00000482399 RPL36AP83881 106 aaKnown RBP9.28□□□□□ -0.92
VPS52-218ENST00000482399 RPL36ALQ969Q0 106 aaKnown RBP9.28□□□□□ -0.92
VPS52-218ENST00000482399 TMEM101Q96IK0 257 aa9.28□□□□□ -0.92
VPS52-218ENST00000482399 TEX15Q9BXT5 2789 aa9.27□□□□□ -0.92
VPS52-218ENST00000482399 RPL35AP18077 110 aaKnown RBP9.27□□□□□ -0.93
VPS52-218ENST00000482399 ODF3Q96PU9 254 aa9.27□□□□□ -0.93
VPS52-218ENST00000482399 NF1P21359 2839 aa9.27□□□□□ -0.93
VPS52-218ENST00000482399 CSMD2Q7Z408 3487 aa9.27□□□□□ -0.93
VPS52-218ENST00000482399 MRPS36P82909 103 aaKnown RBP9.27□□□□□ -0.93
VPS52-218ENST00000482399 COX6A2Q02221 97 aa9.27□□□□□ -0.93
VPS52-218ENST00000482399 NBEAL2Q6ZNJ1 2754 aa9.27□□□□□ -0.93
VPS52-218ENST00000482399 CFAP46Q8IYW2 2715 aa9.27□□□□□ -0.93
VPS52-218ENST00000482399 INSP01308 110 aa9.26□□□□□ -0.93
VPS52-218ENST00000482399 SPANXA1Q9NS26 97 aa9.26□□□□□ -0.93
VPS52-218ENST00000482399 UBE2D4Q9Y2X8 147 aa9.26□□□□□ -0.93
VPS52-218ENST00000482399 PAX4O43316 350 aa9.26□□□□□ -0.93
VPS52-218ENST00000482399 H3BT86 120 aa9.25□□□□□ -0.93
VPS52-218ENST00000482399 TINCRA0A1B0GVN0 87 aa9.25□□□□□ -0.93
VPS52-218ENST00000482399 BRI3O95415 125 aa9.25□□□□□ -0.93
VPS52-218ENST00000482399 CRPP02741 224 aa9.25□□□□□ -0.93
VPS52-218ENST00000482399 C9orf153Q5TBE3 101 aa9.25□□□□□ -0.93
VPS52-218ENST00000482399 SBSPONQ8IVN8 264 aa9.25□□□□□ -0.93
VPS52-218ENST00000482399 LINC00308Q8TCZ7 52 aa9.25□□□□□ -0.93
VPS52-218ENST00000482399 LINC00694P0DN24 101 aa9.25□□□□□ -0.93
VPS52-218ENST00000482399 DAZ2Q13117 558 aaKnown RBP9.25□□□□□ -0.93
VPS52-218ENST00000482399 DAZ4Q86SG3 579 aaKnown RBP9.25□□□□□ -0.93
VPS52-218ENST00000482399 EDA2RQ9HAV5 297 aa9.25□□□□□ -0.93
VPS52-218ENST00000482399 NOP10Q9NPE3 64 aaKnown RBP9.25□□□□□ -0.93
VPS52-218ENST00000482399 DAZ3Q9NR90 486 aaKnown RBP9.25□□□□□ -0.93
VPS52-218ENST00000482399 LST1O00453 97 aa9.24□□□□□ -0.93
VPS52-218ENST00000482399 ATP5G1P05496 136 aa9.24□□□□□ -0.93
VPS52-218ENST00000482399 NHLRC4P0CG21 123 aaPredicted RBP9.24□□□□□ -0.93
VPS52-218ENST00000482399 CLPSL2Q6UWE3 100 aa9.24□□□□□ -0.93
VPS52-218ENST00000482399 PEMTQ9UBM1 199 aa9.24□□□□□ -0.93
VPS52-218ENST00000482399 VPS13CQ709C8 3753 aa9.24□□□□□ -0.93
VPS52-218ENST00000482399 Q6ZTI0 123 aa9.23□□□□□ -0.93
VPS52-218ENST00000482399 C5orf38Q86SI9 138 aa9.23□□□□□ -0.93
VPS52-218ENST00000482399 Q8N2B8 174 aa9.23□□□□□ -0.93
VPS52-218ENST00000482399 CHCHD7Q9BUK0 85 aa9.23□□□□□ -0.93
VPS52-218ENST00000482399 TRGV4A0A0C4DH28 118 aa9.23□□□□□ -0.93
VPS52-218ENST00000482399 HERVK_113P63121 156 aa9.23□□□□□ -0.93
VPS52-218ENST00000482399 LINC01356Q8N9X3 169 aa9.23□□□□□ -0.93
VPS52-218ENST00000482399 IGKV3D-7A0A0C4DH55 119 aa9.22□□□□□ -0.93
VPS52-218ENST00000482399 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.22□□□□□ -0.93
VPS52-218ENST00000482399 A0A096LPF7 62 aa9.22□□□□□ -0.93
VPS52-218ENST00000482399 RBMY1BA6NDE4 496 aaKnown RBP9.22□□□□□ -0.93
VPS52-218ENST00000482399 RBMY1EA6NEQ0 496 aaKnown RBP9.22□□□□□ -0.93
VPS52-218ENST00000482399 RBMY1DP0C7P1 496 aaKnown RBP9.22□□□□□ -0.93
VPS52-218ENST00000482399 VPREB3Q9UKI3 123 aa9.22□□□□□ -0.93
VPS52-218ENST00000482399 LITAFQ99732 161 aa9.21□□□□□ -0.93
VPS52-218ENST00000482399 PYGO1Q9Y3Y4 419 aa9.21□□□□□ -0.93
VPS52-218ENST00000482399 DEFB130BP0DP73 79 aa9.21□□□□□ -0.94
VPS52-218ENST00000482399 DEFB130AP0DP74 79 aa9.21□□□□□ -0.94
VPS52-218ENST00000482399 MIR7-3HGQ8N6C7 128 aa9.21□□□□□ -0.94
VPS52-218ENST00000482399 MAP6D1Q9H9H5 199 aa9.21□□□□□ -0.94
VPS52-218ENST00000482399 GCN1Q92616 2671 aaKnown RBP9.21□□□□□ -0.94
VPS52-218ENST00000482399 MRPL23Q16540 153 aaKnown RBP9.2□□□□□ -0.94
VPS52-218ENST00000482399 SPANXDQ9BXN6 97 aa9.2□□□□□ -0.94
VPS52-218ENST00000482399 SPANXCQ9NY87 97 aa9.2□□□□□ -0.94
VPS52-218ENST00000482399 MXRA5Q9NR99 2828 aa9.2□□□□□ -0.94
VPS52-218ENST00000482399 HIST1H4AP62805 103 aaKnown RBP9.2□□□□□ -0.94
VPS52-218ENST00000482399 LINC00242Q5T6M2 205 aa9.2□□□□□ -0.94
VPS52-218ENST00000482399 LOC100131303A0A0U1RQF7 123 aa9.19□□□□□ -0.94
VPS52-218ENST00000482399 COX7A2LO14548 114 aa9.19□□□□□ -0.94
VPS52-218ENST00000482399 SLPIP03973 132 aa9.19□□□□□ -0.94
VPS52-218ENST00000482399 KLK9Q2XQG4 91 aa9.19□□□□□ -0.94
VPS52-218ENST00000482399 COPS9Q8WXC6 57 aa9.19□□□□□ -0.94
VPS52-218ENST00000482399 SND1-IT1Q9HBX3 110 aa9.19□□□□□ -0.94
VPS52-218ENST00000482399 C14orf132Q9NPU4 83 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms