RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 LOC100131303A0A0U1RQF7 123 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 ELANEP08246 267 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 ANKRD29Q8N6D5 301 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 M0QY20 66 aa3.93□□□□□ -1.78
SYNE1-220ENST00000471834 BRCA2P51587 3418 aa3.93□□□□□ -1.78
SYNE1-220ENST00000471834 FAM229AH3BQW9 127 aa3.93□□□□□ -1.78
SYNE1-220ENST00000471834 IGHV4-38-2P0DP08 117 aa3.93□□□□□ -1.78
SYNE1-220ENST00000471834 UPK3BQ9BT76 320 aa3.93□□□□□ -1.78
SYNE1-220ENST00000471834 J3QQQ9 107 aa3.93□□□□□ -1.78
SYNE1-220ENST00000471834 IGHV3-30-3P0DP02 117 aa3.93□□□□□ -1.78
SYNE1-220ENST00000471834 Q6ZS46 218 aa3.93□□□□□ -1.78
SYNE1-220ENST00000471834 NDUFA4O00483 81 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 WFDC11Q8NEX6 87 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 J3KT08 172 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 IGHV4-59P01825 116 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 CACNA1AO00555 2505 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 V9GYY9 64 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 DEFB112Q30KQ8 113 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.92□□□□□ -1.78
SYNE1-220ENST00000471834 HIVEP2P31629 2446 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 LMO4P61968 165 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 DSPP15924 2871 aaKnown RBP3.92□□□□□ -1.78
SYNE1-220ENST00000471834 TRBV10-3A0A0K0K1G6 114 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 M0R2N4 97 aa3.92□□□□□ -1.78
SYNE1-220ENST00000471834 IGLV10-54A0A075B6I4 117 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 LINC00167Q96N53 147 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 MYO9AB2RTY4 2548 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 HAMPP81172 84 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 SPTBN1Q01082 2364 aaKnown RBP3.91□□□□□ -1.78
SYNE1-220ENST00000471834 B5MCH6 92 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 HERV-K104P63124 156 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 K7EQD1 137 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 UBE2AP49459 152 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 LINC00643Q86TS7 51 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 ICOSQ9Y6W8 199 aa3.91□□□□□ -1.78
SYNE1-220ENST00000471834 A4D1N5 150 aa3.9□□□□□ -1.78
SYNE1-220ENST00000471834 DEFB4AO15263 64 aa3.9□□□□□ -1.78
SYNE1-220ENST00000471834 TRAV13-2A0A0B4J235 113 aa3.9□□□□□ -1.78
SYNE1-220ENST00000471834 HERVK_113P63121 156 aa3.9□□□□□ -1.78
SYNE1-220ENST00000471834 IGLV4-3A0A075B6K6 122 aa3.9□□□□□ -1.79
SYNE1-220ENST00000471834 IGHV4-30-2A0A087WSY4 118 aa3.9□□□□□ -1.79
SYNE1-220ENST00000471834 MRPL55Q7Z7F7 128 aaKnown RBP3.9□□□□□ -1.79
SYNE1-220ENST00000471834 PCNX1Q96RV3 2341 aa3.9□□□□□ -1.79
SYNE1-220ENST00000471834 COX7B2Q8TF08 81 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 DEFB1P60022 68 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 TMEM258P61165 79 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 FAM236DA0A1B0GTK5 79 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 BAALC-AS2P0C853 105 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 FAM236CP0DP71 79 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-220ENST00000471834 HRNRQ86YZ3 2850 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-220ENST00000471834 LINC00337Q8N6G1 96 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 Q9H8V8 135 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 PKDREJQ9NTG1 2253 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 INAFM2P0DMQ5 153 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 GYPEP15421 78 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 MIAQ16674 131 aa3.89□□□□□ -1.79
SYNE1-220ENST00000471834 IGHV1-58A0A0C4DH39 117 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 IGKV3D-7A0A0C4DH55 119 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 MUSTN1Q8IVN3 82 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 FAM208BQ5VWN6 2430 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 AGRNO00468 2067 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 H7C423 109 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 TRIAP1O43715 76 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 RPL39P62891 51 aaKnown RBP3.88□□□□□ -1.79
SYNE1-220ENST00000471834 K7EQG2 157 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 CLEC2BQ92478 149 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 UNC80Q8N2C7 3258 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 TRBV12-3P01733 135 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 LINC00694P0DN24 101 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 DNAJC9-AS1A6NH13 148 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 C5orf56Q8N8D9 126 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 USP9YO00507 2555 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-220ENST00000471834 UQCRQO14949 82 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 RPL28P46779 137 aaKnown RBP3.88□□□□□ -1.79
SYNE1-220ENST00000471834 C16orf74Q96GX8 76 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 VSIG2Q96IQ7 327 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 UBL5Q9BZL1 73 aa3.88□□□□□ -1.79
SYNE1-220ENST00000471834 LINC01561Q8N1V8 128 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 C10orf105Q8TEF2 133 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 AKAP6Q13023 2319 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 NDUFC2-KCTD14E9PQ53 114 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 NDUFA1O15239 70 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 NTN5Q8WTR8 489 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-220ENST00000471834 C20orf173Q96LM9 149 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 WWC2-AS2Q96NR7 200 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 COX7A2LO14548 114 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 TRAV10A0A0B4J240 114 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 PLXNB1O43157 2135 aa3.87□□□□□ -1.79
SYNE1-220ENST00000471834 CFAP54Q96N23 3096 aa3.86□□□□□ -1.79
SYNE1-220ENST00000471834 USP9XQ93008 2570 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-220ENST00000471834 IGHV4-61A0A0C4DH41 118 aa3.86□□□□□ -1.79
SYNE1-220ENST00000471834 ADORA2A-AS1P86434 159 aa3.86□□□□□ -1.79
SYNE1-220ENST00000471834 C4orf3Q8WVX3 66 aa3.86□□□□□ -1.79
SYNE1-220ENST00000471834 CHCHD7Q9BUK0 85 aa3.86□□□□□ -1.79
SYNE1-220ENST00000471834 BLCAPP62952 87 aa3.86□□□□□ -1.79
SYNE1-220ENST00000471834 C11orf72Q8NBR9 251 aa3.86□□□□□ -1.79
SYNE1-220ENST00000471834 DEFB135Q30KP9 77 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 ADAMTSL4-AS1Q5T5F5 129 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 OPRPNQ99935 248 aaPredicted RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms