RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 IGKV3OR2-268A0A0C4DH90 116 aa13.17□□□□□ -0.3
COL9A3-204ENST00000463487 YPEL4Q96NS1 127 aa13.17□□□□□ -0.3
COL9A3-204ENST00000463487 IFI27P40305 119 aaPredicted RBP13.16□□□□□ -0.3
COL9A3-204ENST00000463487 CDC42SE2Q9NRR3 84 aa13.16□□□□□ -0.3
COL9A3-204ENST00000463487 CYSLTR1Q9Y271 337 aa13.16□□□□□ -0.3
COL9A3-204ENST00000463487 IGLV10-54A0A075B6I4 117 aa13.15□□□□□ -0.3
COL9A3-204ENST00000463487 LRCOL1A6NCL2 159 aa13.15□□□□□ -0.3
COL9A3-204ENST00000463487 SPATA12Q7Z6I5 190 aa13.15□□□□□ -0.3
COL9A3-204ENST00000463487 DNAH10Q8IVF4 4471 aa13.14□□□□□ -0.31
COL9A3-204ENST00000463487 RPL39P62891 51 aaKnown RBP13.14□□□□□ -0.31
COL9A3-204ENST00000463487 SS18Q15532 418 aa13.14□□□□□ -0.31
COL9A3-204ENST00000463487 C14orf177Q52M58 125 aa13.14□□□□□ -0.31
COL9A3-204ENST00000463487 CDPF1Q6NVV7 123 aa13.14□□□□□ -0.31
COL9A3-204ENST00000463487 PGPEP1Q9NXJ5 209 aa13.14□□□□□ -0.31
COL9A3-204ENST00000463487 DNAH2Q9P225 4427 aa13.14□□□□□ -0.31
COL9A3-204ENST00000463487 LINC01549A6NIU2 74 aa13.13□□□□□ -0.31
COL9A3-204ENST00000463487 FA2HQ7L5A8 372 aa13.13□□□□□ -0.31
COL9A3-204ENST00000463487 BAALCQ8WXS3 180 aa13.13□□□□□ -0.31
COL9A3-204ENST00000463487 CCL25O15444 150 aa13.12□□□□□ -0.31
COL9A3-204ENST00000463487 Q8N814 137 aa13.12□□□□□ -0.31
COL9A3-204ENST00000463487 NTN5Q8WTR8 489 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-204ENST00000463487 PYGO1Q9Y3Y4 419 aa13.12□□□□□ -0.31
COL9A3-204ENST00000463487 MRPS36P82909 103 aaKnown RBP13.11□□□□□ -0.31
COL9A3-204ENST00000463487 C2orf66Q6UXQ4 117 aa13.11□□□□□ -0.31
COL9A3-204ENST00000463487 Q6ZUT4 128 aa13.11□□□□□ -0.31
COL9A3-204ENST00000463487 LINC00959A0A1B0GUT2 108 aa13.1□□□□□ -0.31
COL9A3-204ENST00000463487 C16orf90A8MZG2 172 aa13.1□□□□□ -0.31
COL9A3-204ENST00000463487 LECT2O14960 151 aa13.1□□□□□ -0.31
COL9A3-204ENST00000463487 RAB5BP61020 215 aa13.1□□□□□ -0.31
COL9A3-204ENST00000463487 Q6ZN92 141 aa13.1□□□□□ -0.31
COL9A3-204ENST00000463487 MAPKAPK5-AS1Q8N8E1 139 aa13.1□□□□□ -0.31
COL9A3-204ENST00000463487 CHCHD10Q8WYQ3 142 aaPredicted RBP13.1□□□□□ -0.31
COL9A3-204ENST00000463487 C1orf196B1AJZ1 125 aa13.09□□□□□ -0.31
COL9A3-204ENST00000463487 NPSP0C0P6 89 aa13.09□□□□□ -0.31
COL9A3-204ENST00000463487 GAGE12HA6NDE8 117 aa13.08□□□□□ -0.32
COL9A3-204ENST00000463487 PAPPA-AS1Q5QFB9 102 aa13.08□□□□□ -0.32
COL9A3-204ENST00000463487 C18orf32Q8TCD1 76 aa13.08□□□□□ -0.32
COL9A3-204ENST00000463487 AP5S1Q9NUS5 200 aa13.08□□□□□ -0.32
COL9A3-204ENST00000463487 FAT2Q9NYQ8 4349 aa13.07□□□□□ -0.32
COL9A3-204ENST00000463487 LINC01546A6NGU7 62 aa13.07□□□□□ -0.32
COL9A3-204ENST00000463487 XCL1P47992 114 aa13.07□□□□□ -0.32
COL9A3-204ENST00000463487 KRTAP10-2P60368 255 aa13.07□□□□□ -0.32
COL9A3-204ENST00000463487 RNASE13Q5GAN3 156 aaKnown RBP13.07□□□□□ -0.32
COL9A3-204ENST00000463487 CFAP161Q6P656 301 aa13.07□□□□□ -0.32
COL9A3-204ENST00000463487 KRTAP26-1Q6PEX3 210 aa13.07□□□□□ -0.32
COL9A3-204ENST00000463487 TMEM141Q96I45 108 aa13.07□□□□□ -0.32
COL9A3-204ENST00000463487 DNAH17Q9UFH2 4485 aa13.06□□□□□ -0.32
COL9A3-204ENST00000463487 IGLV5-52A0A0A0MRZ9 124 aa13.06□□□□□ -0.32
COL9A3-204ENST00000463487 TRAV13-1A0A0B4J241 112 aa13.06□□□□□ -0.32
COL9A3-204ENST00000463487 USP17L23D6RBM5 183 aa13.06□□□□□ -0.32
COL9A3-204ENST00000463487 TOMM6Q96B49 74 aa13.06□□□□□ -0.32
COL9A3-204ENST00000463487 IFITM10A6NMD0 228 aa13.05□□□□□ -0.32
COL9A3-204ENST00000463487 WFDC2Q14508 124 aa13.05□□□□□ -0.32
COL9A3-204ENST00000463487 TEX43Q6ZNM6 134 aa13.05□□□□□ -0.32
COL9A3-204ENST00000463487 C2orf88Q9BSF0 95 aa13.05□□□□□ -0.32
COL9A3-204ENST00000463487 HECTD4Q9Y4D8 3996 aa13.05□□□□□ -0.32
COL9A3-204ENST00000463487 IGLV4-3A0A075B6K6 122 aa13.04□□□□□ -0.32
COL9A3-204ENST00000463487 LINC00614P0C842 121 aa13.04□□□□□ -0.32
COL9A3-204ENST00000463487 S100A1P23297 94 aa13.04□□□□□ -0.32
COL9A3-204ENST00000463487 CD164L2Q6UWJ8 174 aa13.04□□□□□ -0.32
COL9A3-204ENST00000463487 TIMM17AQ99595 171 aa13.04□□□□□ -0.32
COL9A3-204ENST00000463487 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.03□□□□□ -0.32
COL9A3-204ENST00000463487 COLCA2A8K830 154 aa13.03□□□□□ -0.32
COL9A3-204ENST00000463487 OPRPNQ99935 248 aaPredicted RBP13.03□□□□□ -0.32
COL9A3-204ENST00000463487 VCX2Q9H322 139 aa13.03□□□□□ -0.32
COL9A3-204ENST00000463487 TRGC2P03986 189 aa13.02□□□□□ -0.33
COL9A3-204ENST00000463487 FOXI1Q12951 378 aa13.02□□□□□ -0.33
COL9A3-204ENST00000463487 ERASQ7Z444 233 aa13.02□□□□□ -0.33
COL9A3-204ENST00000463487 SCGB3A1Q96QR1 104 aa13.02□□□□□ -0.33
COL9A3-204ENST00000463487 IGIPA6NJ69 53 aa13.01□□□□□ -0.33
COL9A3-204ENST00000463487 EPPK1P58107 5090 aaKnown RBP13□□□□□ -0.33
COL9A3-204ENST00000463487 SCO1O75880 301 aa13□□□□□ -0.33
COL9A3-204ENST00000463487 MALP21145 153 aa13□□□□□ -0.33
COL9A3-204ENST00000463487 hDV102S1A0JD36 115 aa12.99□□□□□ -0.33
COL9A3-204ENST00000463487 COX7A2LO14548 114 aa12.99□□□□□ -0.33
COL9A3-204ENST00000463487 GCSHP23434 173 aa12.99□□□□□ -0.33
COL9A3-204ENST00000463487 CHCHD1Q96BP2 118 aaKnown RBP12.99□□□□□ -0.33
COL9A3-204ENST00000463487 IGHV1-58A0A0C4DH39 117 aa12.98□□□□□ -0.33
COL9A3-204ENST00000463487 HBDP02042 147 aa12.98□□□□□ -0.33
COL9A3-204ENST00000463487 BAGE3Q86Y29 109 aa12.98□□□□□ -0.33
COL9A3-204ENST00000463487 FAM104AQ969W3 186 aa12.98□□□□□ -0.33
COL9A3-204ENST00000463487 APOMO95445 188 aa12.97□□□□□ -0.33
COL9A3-204ENST00000463487 FUSP35637 526 aaKnown RBP eCLIP12.97□□□□□ -0.33
COL9A3-204ENST00000463487 AMELXQ99217 191 aa12.97□□□□□ -0.33
COL9A3-204ENST00000463487 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.96□□□□□ -0.33
COL9A3-204ENST00000463487 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.96□□□□□ -0.33
COL9A3-204ENST00000463487 ATP6V1G1O75348 118 aa12.96□□□□□ -0.33
COL9A3-204ENST00000463487 PRSS1P07477 247 aa12.96□□□□□ -0.33
COL9A3-204ENST00000463487 SEC11AP67812 179 aa12.96□□□□□ -0.33
COL9A3-204ENST00000463487 URB1-AS1Q96HZ7 61 aa12.95□□□□□ -0.34
COL9A3-204ENST00000463487 PKD1P98161 4303 aa12.94□□□□□ -0.34
COL9A3-204ENST00000463487 UBE2D1P51668 147 aa12.94□□□□□ -0.34
COL9A3-204ENST00000463487 C15orf56Q8N910 161 aa12.94□□□□□ -0.34
COL9A3-204ENST00000463487 GVQW2A0A096LPI5 108 aaPredicted RBP12.93□□□□□ -0.34
COL9A3-204ENST00000463487 HSBP1O75506 76 aa12.93□□□□□ -0.34
COL9A3-204ENST00000463487 ATP5LO75964 103 aa12.93□□□□□ -0.34
COL9A3-204ENST00000463487 PKHD1P08F94 4074 aa12.93□□□□□ -0.34
COL9A3-204ENST00000463487 ZNF561-AS1K7EIQ3 104 aa12.92□□□□□ -0.34
COL9A3-204ENST00000463487 HIGD2BQ4VC39 106 aa12.92□□□□□ -0.34
COL9A3-204ENST00000463487 LINC00173Q6ZV60 143 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms