RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	SMCO4	Q9NRQ5	59 aa		7.01	□□□□□ -1.29
PTPN7-204	ENST00000462815	TRAV9-1	A0A075B6T8	112 aa		7	□□□□□ -1.29
PTPN7-204	ENST00000462815		A0A1B0GUT8	65 aa		7	□□□□□ -1.29
PTPN7-204	ENST00000462815		A0A1B0GXF2	115 aa		7	□□□□□ -1.29
PTPN7-204	ENST00000462815	NTF3	P20783	257 aa		7	□□□□□ -1.29
PTPN7-204	ENST00000462815	SST	P61278	116 aa		7	□□□□□ -1.29
PTPN7-204	ENST00000462815	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	7	□□□□□ -1.29
PTPN7-204	ENST00000462815	TPPP3	Q9BW30	176 aa		7	□□□□□ -1.29
PTPN7-204	ENST00000462815	TRBV24-1	A0A075B6N3	115 aa		6.99	□□□□□ -1.29
PTPN7-204	ENST00000462815	TGIF2-C20orf24	A0A0A6YYL0	155 aa		6.99	□□□□□ -1.29
PTPN7-204	ENST00000462815	S100P	P25815	95 aa		6.99	□□□□□ -1.29
PTPN7-204	ENST00000462815	PRR3	P79522	188 aa	Known RBP	6.99	□□□□□ -1.29
PTPN7-204	ENST00000462815	GATD1	Q8NB37	220 aa		6.99	□□□□□ -1.29
PTPN7-204	ENST00000462815	BTF3L4	Q96K17	158 aa		6.99	□□□□□ -1.29
PTPN7-204	ENST00000462815	TMEM243	Q9BU79	118 aa		6.99	□□□□□ -1.29
PTPN7-204	ENST00000462815	COLCA2	A8K830	154 aa		6.98	□□□□□ -1.29
PTPN7-204	ENST00000462815	SMIM17	P0DL12	118 aa		6.98	□□□□□ -1.29
PTPN7-204	ENST00000462815	KRTAP10-8	P60410	259 aa		6.98	□□□□□ -1.29
PTPN7-204	ENST00000462815	RIG	Q13278	110 aa		6.98	□□□□□ -1.29
PTPN7-204	ENST00000462815	TWIST1	Q15672	202 aa		6.98	□□□□□ -1.29
PTPN7-204	ENST00000462815	MRPL54	Q6P161	138 aa	Known RBP	6.98	□□□□□ -1.29
PTPN7-204	ENST00000462815	ATP5L2	Q7Z4Y8	100 aa		6.98	□□□□□ -1.29
PTPN7-204	ENST00000462815	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	6.97	□□□□□ -1.29
PTPN7-204	ENST00000462815		A0A1B0GW15	77 aa		6.97	□□□□□ -1.29
PTPN7-204	ENST00000462815	MGP	P08493	103 aa		6.97	□□□□□ -1.29
PTPN7-204	ENST00000462815	COX6A2	Q02221	97 aa		6.97	□□□□□ -1.29
PTPN7-204	ENST00000462815	RASL11A	Q6T310	242 aa		6.97	□□□□□ -1.29
PTPN7-204	ENST00000462815	PRSS3P2	Q8NHM4	247 aa		6.97	□□□□□ -1.29
PTPN7-204	ENST00000462815	BORCS7	Q96B45	105 aa		6.97	□□□□□ -1.29
PTPN7-204	ENST00000462815	AP5S1	Q9NUS5	200 aa		6.97	□□□□□ -1.29
PTPN7-204	ENST00000462815		A0A0J9YXV3	536 aa		6.96	□□□□□ -1.3
PTPN7-204	ENST00000462815	GAGE12H	A6NDE8	117 aa		6.96	□□□□□ -1.3
PTPN7-204	ENST00000462815		H7C1H1	209 aa		6.96	□□□□□ -1.3
PTPN7-204	ENST00000462815	CAMP	P49913	170 aa		6.96	□□□□□ -1.3
PTPN7-204	ENST00000462815	HBB	P68871	147 aa		6.96	□□□□□ -1.3
PTPN7-204	ENST00000462815	TMEM191A	Q9H0A3	160 aa		6.96	□□□□□ -1.3
PTPN7-204	ENST00000462815	NIT2	Q9NQR4	276 aa		6.96	□□□□□ -1.3
PTPN7-204	ENST00000462815	GVQW2	A0A096LPI5	108 aa	Predicted RBP	6.95	□□□□□ -1.3
PTPN7-204	ENST00000462815	RPS10	P46783	165 aa	Known RBP	6.95	□□□□□ -1.3
PTPN7-204	ENST00000462815	HIGD2B	Q4VC39	106 aa		6.95	□□□□□ -1.3
PTPN7-204	ENST00000462815	TMEM136	Q6ZRR5	245 aa		6.95	□□□□□ -1.3
PTPN7-204	ENST00000462815	C7orf33	Q8WU49	177 aa		6.95	□□□□□ -1.3
PTPN7-204	ENST00000462815		A0A096LNI7	61 aa		6.94	□□□□□ -1.3
PTPN7-204	ENST00000462815	S100A8	P05109	93 aa		6.94	□□□□□ -1.3
PTPN7-204	ENST00000462815	TRGC1	P0CF51	173 aa		6.94	□□□□□ -1.3
PTPN7-204	ENST00000462815	SRSF9	Q13242	221 aa	Known RBP eCLIP	6.94	□□□□□ -1.3
PTPN7-204	ENST00000462815	MAJIN	Q3KP22	176 aa		6.94	□□□□□ -1.3
PTPN7-204	ENST00000462815	GNB1L	Q9BYB4	327 aa		6.94	□□□□□ -1.3
PTPN7-204	ENST00000462815	IGKV2-24	A0A0C4DH68	120 aa		6.93	□□□□□ -1.3
PTPN7-204	ENST00000462815	RAB4A	P20338	218 aa		6.93	□□□□□ -1.3
PTPN7-204	ENST00000462815	AMT	P48728	403 aa		6.93	□□□□□ -1.3
PTPN7-204	ENST00000462815	FOXI1	Q12951	378 aa		6.93	□□□□□ -1.3
PTPN7-204	ENST00000462815	COX19	Q49B96	90 aa		6.93	□□□□□ -1.3
PTPN7-204	ENST00000462815	FAM104B	Q5XKR9	115 aa		6.93	□□□□□ -1.3
PTPN7-204	ENST00000462815	AMN1	Q8IY45	258 aa		6.93	□□□□□ -1.3
PTPN7-204	ENST00000462815	STPG4	Q8N801	248 aa		6.93	□□□□□ -1.3
PTPN7-204	ENST00000462815	RAB5A	P20339	215 aa		6.92	□□□□□ -1.3
PTPN7-204	ENST00000462815	COTL1	Q14019	142 aa		6.92	□□□□□ -1.3
PTPN7-204	ENST00000462815	MRPL51	Q4U2R6	128 aa	Known RBP	6.92	□□□□□ -1.3
PTPN7-204	ENST00000462815	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	6.92	□□□□□ -1.3
PTPN7-204	ENST00000462815	TRAV26-2	A0A0B4J265	109 aa		6.91	□□□□□ -1.3
PTPN7-204	ENST00000462815	UBE2L6	O14933	153 aa		6.91	□□□□□ -1.3
PTPN7-204	ENST00000462815	GAS8-AS1	O95177	125 aa		6.91	□□□□□ -1.3
PTPN7-204	ENST00000462815	CFAP161	Q6P656	301 aa		6.91	□□□□□ -1.3
PTPN7-204	ENST00000462815	SPINK6	Q6UWN8	80 aa		6.91	□□□□□ -1.3
PTPN7-204	ENST00000462815	SMIM15	Q7Z3B0	74 aa		6.91	□□□□□ -1.3
PTPN7-204	ENST00000462815	MUC2	Q02817	5179 aa		6.91	□□□□□ -1.3
PTPN7-204	ENST00000462815	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	6.9	□□□□□ -1.3
PTPN7-204	ENST00000462815	IGKV3OR2-268	A0A0C4DH90	116 aa		6.9	□□□□□ -1.3
PTPN7-204	ENST00000462815	IGKV2-29	A2NJV5	120 aa	Predicted RBP	6.9	□□□□□ -1.3
PTPN7-204	ENST00000462815	MT-ND6	P03923	174 aa		6.9	□□□□□ -1.3
PTPN7-204	ENST00000462815	RPL39L	Q96EH5	51 aa	Known RBP	6.9	□□□□□ -1.3
PTPN7-204	ENST00000462815	MRPL18	Q9H0U6	180 aa	Known RBP	6.9	□□□□□ -1.3
PTPN7-204	ENST00000462815	TRAPPC1	Q9Y5R8	145 aa		6.9	□□□□□ -1.3
PTPN7-204	ENST00000462815	NCR2	O95944	276 aa		6.89	□□□□□ -1.31
PTPN7-204	ENST00000462815	APCS	P02743	223 aa		6.89	□□□□□ -1.31
PTPN7-204	ENST00000462815	FABP9	Q0Z7S8	132 aa		6.89	□□□□□ -1.31
PTPN7-204	ENST00000462815	KIAA1644	Q3SXP7	199 aa		6.89	□□□□□ -1.31
PTPN7-204	ENST00000462815	SMKR1	H3BMG3	65 aa		6.88	□□□□□ -1.31
PTPN7-204	ENST00000462815		H7C423	109 aa		6.88	□□□□□ -1.31
PTPN7-204	ENST00000462815	TRGC2	P03986	189 aa		6.88	□□□□□ -1.31
PTPN7-204	ENST00000462815	FGF6	P10767	208 aa		6.88	□□□□□ -1.31
PTPN7-204	ENST00000462815	NRAC	Q8N912	160 aa		6.88	□□□□□ -1.31
PTPN7-204	ENST00000462815	LINC00526	Q96FQ7	95 aa		6.88	□□□□□ -1.31
PTPN7-204	ENST00000462815	MRAP2	Q96G30	205 aa		6.88	□□□□□ -1.31
PTPN7-204	ENST00000462815		D6R8Y8	96 aa		6.87	□□□□□ -1.31
PTPN7-204	ENST00000462815	PPBP	P02775	128 aa		6.87	□□□□□ -1.31
PTPN7-204	ENST00000462815	ESD	P10768	282 aa		6.87	□□□□□ -1.31
PTPN7-204	ENST00000462815	CKS2	P33552	79 aa		6.87	□□□□□ -1.31
PTPN7-204	ENST00000462815	OR5A1	Q8NGJ0	315 aa		6.87	□□□□□ -1.31
PTPN7-204	ENST00000462815	ALKBH7	Q9BT30	221 aa	Predicted RBP	6.87	□□□□□ -1.31
PTPN7-204	ENST00000462815	LINC00474	Q9P2X8	69 aa		6.87	□□□□□ -1.31
PTPN7-204	ENST00000462815	LINC00959	A0A1B0GUT2	108 aa		6.86	□□□□□ -1.31
PTPN7-204	ENST00000462815	ZNF25	P17030	456 aa	Predicted RBP	6.86	□□□□□ -1.31
PTPN7-204	ENST00000462815	REG3G	Q6UW15	175 aa		6.86	□□□□□ -1.31
PTPN7-204	ENST00000462815		Q6ZRP5	223 aa		6.86	□□□□□ -1.31
PTPN7-204	ENST00000462815	ORMDL3	Q8N138	153 aa		6.86	□□□□□ -1.31
PTPN7-204	ENST00000462815	IGHV1-58	A0A0C4DH39	117 aa		6.85	□□□□□ -1.31
PTPN7-204	ENST00000462815	TRBV6-5	A0A0K0K1A5	114 aa		6.85	□□□□□ -1.31
PTPN7-204	ENST00000462815	SDHAF1	A6NFY7	115 aa		6.85	□□□□□ -1.31

Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms