RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 MPV17L2Q567V2 206 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 SAMD5Q5TGI4 173 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 C11orf68Q9H3H3 251 aaKnown RBP4.26□□□□□ -1.73
VPS50-205ENST00000441602 TMEM238LA0A1B0GVL6 79 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 TMEM223A0PJW6 202 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 A6NJY4 79 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 J3QQQ9 107 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 KRTAP10-11P60412 298 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 GAGE6Q13070 117 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 SBSPONQ8IVN8 264 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 HIST1H4GQ99525 98 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 SPATA25Q9BR10 227 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 FLNBO75369 2602 aaKnown RBP4.25□□□□□ -1.73
VPS50-205ENST00000441602 JMJD1CQ15652 2540 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 IGKV2D-26A0A0A0MRZ7 120 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 LOC100131303A0A0U1RQF7 123 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 CYSRT1A8MQ03 144 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 DEFB4AO15263 64 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 LINC00694P0DN24 101 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 BVES-AS1Q5T3Y7 98 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 C2orf91Q6ZV80 131 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 TMEM262E9PQX1 116 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 GCSHP23434 173 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 UBE2D1P51668 147 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 Q9UF83 564 aa4.25□□□□□ -1.73
VPS50-205ENST00000441602 CCL25O15444 150 aa4.24□□□□□ -1.73
VPS50-205ENST00000441602 SRSF9Q13242 221 aaKnown RBP eCLIP4.24□□□□□ -1.73
VPS50-205ENST00000441602 CEMP1Q6PRD7 247 aaPredicted RBP4.24□□□□□ -1.73
VPS50-205ENST00000441602 NTM-AS1Q6ZSK4 140 aa4.24□□□□□ -1.73
VPS50-205ENST00000441602 NOTCH3Q9UM47 2321 aa4.24□□□□□ -1.73
VPS50-205ENST00000441602 NACAE9PAV3 2078 aa4.24□□□□□ -1.73
VPS50-205ENST00000441602 G3V4G9 280 aa4.24□□□□□ -1.73
VPS50-205ENST00000441602 CDC42SE2Q9NRR3 84 aa4.24□□□□□ -1.73
VPS50-205ENST00000441602 TRAV13-1A0A0B4J241 112 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 IGHV1-58A0A0C4DH39 117 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 A0A0J9YY99 117 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 TMEM238C9JI98 176 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 SS18Q15532 418 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 RNASE13Q5GAN3 156 aaKnown RBP4.23□□□□□ -1.73
VPS50-205ENST00000441602 VSIG2Q96IQ7 327 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 H3BNG1 76 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 COPS9Q8WXC6 57 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 A0A1B0GV90 55 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 SMIM13P0DJ93 91 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 CIRBPQ14011 172 aaKnown RBP4.23□□□□□ -1.73
VPS50-205ENST00000441602 DEFB121Q5J5C9 76 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 FAM19A3Q7Z5A8 133 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 CELA1Q9UNI1 258 aa4.23□□□□□ -1.73
VPS50-205ENST00000441602 MAPKAPK5-AS1Q8N8E1 139 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 BAHCC1Q9P281 2608 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 IGLV5-45A0A087WSX0 123 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 A0A1B0GUV1 79 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 LELP1Q5T871 98 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 CEND1Q8N111 149 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 SPANXB1Q9NS25 103 aaPredicted RBP4.22□□□□□ -1.73
VPS50-205ENST00000441602 OTOGQ6ZRI0 2925 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 IGHV3-30-3P0DP02 117 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 SFTA2Q6UW10 78 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 C11orf45Q8TAV5 145 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 TTTY13Q9BZ97 58 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 RETNQ9HD89 108 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 NDUFA12Q9UI09 145 aa4.22□□□□□ -1.73
VPS50-205ENST00000441602 IGHV3-64A0A075B6Q5 118 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 SPINK8P0C7L1 97 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 C12orf74Q32Q52 190 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 TM2D2Q9BX73 214 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 IGKV3OR2-268A0A0C4DH90 116 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 RBX1P62877 108 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 HERV-K104P63124 156 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 LINC00242Q5T6M2 205 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 Q6ZVH6 145 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 TP73-AS1Q9UF72 201 aa4.21□□□□□ -1.74
VPS50-205ENST00000441602 CDKN2A-AS1Q9UH64 79 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 COX11Q9Y6N1 276 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 A0A096LPF7 62 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 RPL24P83731 157 aaKnown RBP4.2□□□□□ -1.74
VPS50-205ENST00000441602 VAMP3Q15836 100 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 KPRPQ5T749 579 aaPredicted RBP4.2□□□□□ -1.74
VPS50-205ENST00000441602 LYRM7Q5U5X0 104 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 ZFAND6Q6FIF0 208 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 LINC01561Q8N1V8 128 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 TRAV10A0A0B4J240 114 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 TIMM17BO60830 172 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 LURAP1LQ8IV03 231 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 ATRQ13535 2644 aa4.2□□□□□ -1.74
VPS50-205ENST00000441602 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.19□□□□□ -1.74
VPS50-205ENST00000441602 A0A0J9YWU9 116 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 NDUFA1O15239 70 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 FAM104AQ969W3 186 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 NHP2Q9NX24 153 aaKnown RBP4.19□□□□□ -1.74
VPS50-205ENST00000441602 DEFB131BA0A096LNP1 70 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 CRPP02741 224 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 ANGP03950 147 aaKnown RBP4.19□□□□□ -1.74
VPS50-205ENST00000441602 PRSS2P07478 247 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 IFITM1P13164 125 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 C15orf53Q8NAA6 179 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 TEP1Q99973 2627 aaKnown RBP4.19□□□□□ -1.74
VPS50-205ENST00000441602 TRAV8-3A0A0A6YYJ7 113 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 IGLV5-39A0A0G2JS06 123 aa4.19□□□□□ -1.74
VPS50-205ENST00000441602 A0A0J9YXY3 114 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms