RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 NISCHQ9Y2I1 1504 aa13.3□□□□□ -0.28
VPS50-205ENST00000441602 CCDC180Q9P1Z9 1646 aa11.6□□□□□ -0.55
VPS50-205ENST00000441602 ZCCHC6Q5VYS8 1495 aaKnown RBP11.18□□□□□ -0.62
VPS50-205ENST00000441602 DCAF1Q9Y4B6 1507 aa11.03□□□□□ -0.64
VPS50-205ENST00000441602 DCAF8L2P0C7V8 631 aa11.02□□□□□ -0.65
VPS50-205ENST00000441602 MYO15BQ96JP2 1530 aa10.89□□□□□ -0.67
VPS50-205ENST00000441602 ABCC9O60706 1549 aa10.88□□□□□ -0.67
VPS50-205ENST00000441602 SHROOM4Q9ULL8 1493 aa10.88□□□□□ -0.67
VPS50-205ENST00000441602 NACADO15069 1562 aa10.81□□□□□ -0.68
VPS50-205ENST00000441602 RB1CC1Q8TDY2 1594 aa10.71□□□□□ -0.7
VPS50-205ENST00000441602 SCRIBQ14160 1630 aa10.63□□□□□ -0.71
VPS50-205ENST00000441602 SUPT5HO00267 1087 aaKnown RBP10.54□□□□□ -0.72
VPS50-205ENST00000441602 RSF1Q96T23 1441 aaPredicted RBP10.32□□□□□ -0.76
VPS50-205ENST00000441602 UNC13AQ9UPW8 1703 aa10.32□□□□□ -0.76
VPS50-205ENST00000441602 BAZ1AQ9NRL2 1556 aaPredicted RBP10.31□□□□□ -0.76
VPS50-205ENST00000441602 CECR2Q9BXF3 1484 aa10.27□□□□□ -0.77
VPS50-205ENST00000441602 PABPN1Q86U42 306 aaKnown RBP eCLIP10.26□□□□□ -0.77
VPS50-205ENST00000441602 BICRAQ9NZM4 1560 aa10.26□□□□□ -0.77
VPS50-205ENST00000441602 MROH2BQ7Z745 1585 aa10.24□□□□□ -0.77
VPS50-205ENST00000441602 SMARCA4P51532 1647 aa10.2□□□□□ -0.78
VPS50-205ENST00000441602 WIZO95785 1651 aa10.14□□□□□ -0.79
VPS50-205ENST00000441602 TOP2AP11388 1531 aaKnown RBP10.12□□□□□ -0.79
VPS50-205ENST00000441602 CHIC1Q5VXU3 224 aa10.1□□□□□ -0.79
VPS50-205ENST00000441602 SMARCA2P51531 1590 aa10.08□□□□□ -0.8
VPS50-205ENST00000441602 PEG3Q9GZU2 1588 aa10.07□□□□□ -0.8
VPS50-205ENST00000441602 ATAD2BQ9ULI0 1458 aa10.03□□□□□ -0.8
VPS50-205ENST00000441602 BAZ1BQ9UIG0 1483 aaKnown RBP10.02□□□□□ -0.81
VPS50-205ENST00000441602 EIF4G1Q04637 1599 aaKnown RBP10□□□□□ -0.81
VPS50-205ENST00000441602 CCDC88BA6NC98 1476 aa9.97□□□□□ -0.81
VPS50-205ENST00000441602 TRIM41Q8WV44 630 aa9.96□□□□□ -0.82
VPS50-205ENST00000441602 HMGXB3Q12766 1538 aa9.95□□□□□ -0.82
VPS50-205ENST00000441602 NCAPD3P42695 1498 aa9.95□□□□□ -0.82
VPS50-205ENST00000441602 CC2D2AQ9P2K1 1620 aa9.82□□□□□ -0.84
VPS50-205ENST00000441602 WRNQ14191 1432 aaPredicted RBP eCLIP9.78□□□□□ -0.84
VPS50-205ENST00000441602 EEA1Q15075 1411 aa9.75□□□□□ -0.85
VPS50-205ENST00000441602 ABCC8Q09428 1581 aa9.75□□□□□ -0.85
VPS50-205ENST00000441602 CFTRP13569 1480 aa9.73□□□□□ -0.85
VPS50-205ENST00000441602 FAM9AQ8IZU1 332 aaPredicted RBP9.73□□□□□ -0.85
VPS50-205ENST00000441602 CADPSQ9ULU8 1353 aa9.72□□□□□ -0.85
VPS50-205ENST00000441602 LOC105371045A0A1W2PR82 267 aa9.67□□□□□ -0.86
VPS50-205ENST00000441602 PRDM2Q13029 1718 aa9.67□□□□□ -0.86
VPS50-205ENST00000441602 SYNJ1O43426 1573 aa9.65□□□□□ -0.87
VPS50-205ENST00000441602 TOP2BQ02880 1626 aa9.64□□□□□ -0.87
VPS50-205ENST00000441602 CSRNP3Q8WYN3 585 aa9.63□□□□□ -0.87
VPS50-205ENST00000441602 BIVM-ERCC5R4GMW8 1640 aa9.63□□□□□ -0.87
VPS50-205ENST00000441602 LAMC3Q9Y6N6 1575 aa9.61□□□□□ -0.87
VPS50-205ENST00000441602 FANCD2Q9BXW9 1451 aa9.6□□□□□ -0.87
VPS50-205ENST00000441602 SOGA1O94964 1423 aa9.6□□□□□ -0.87
VPS50-205ENST00000441602 PDS5BQ9NTI5 1447 aa9.59□□□□□ -0.87
VPS50-205ENST00000441602 CUX1P39880 1505 aa9.58□□□□□ -0.88
VPS50-205ENST00000441602 GOLGA3Q08378 1498 aa9.57□□□□□ -0.88
VPS50-205ENST00000441602 CEP164Q9UPV0 1460 aa9.57□□□□□ -0.88
VPS50-205ENST00000441602 KIF27Q86VH2 1401 aa9.56□□□□□ -0.88
VPS50-205ENST00000441602 EHMT2Q96KQ7 1210 aa9.55□□□□□ -0.88
VPS50-205ENST00000441602 UBTFP17480 764 aaKnown RBP9.55□□□□□ -0.88
VPS50-205ENST00000441602 TNIKQ9UKE5 1360 aa9.54□□□□□ -0.88
VPS50-205ENST00000441602 DNMBPQ6XZF7 1577 aa9.53□□□□□ -0.88
VPS50-205ENST00000441602 KIF21BO75037 1637 aa9.53□□□□□ -0.88
VPS50-205ENST00000441602 NESP48681 1621 aa9.52□□□□□ -0.89
VPS50-205ENST00000441602 RUSC2Q8N2Y8 1516 aa9.52□□□□□ -0.89
VPS50-205ENST00000441602 FGD5Q6ZNL6 1462 aa9.5□□□□□ -0.89
VPS50-205ENST00000441602 TOPBP1Q92547 1522 aa9.48□□□□□ -0.89
VPS50-205ENST00000441602 CUX2O14529 1486 aa9.48□□□□□ -0.89
VPS50-205ENST00000441602 ERICH3Q5RHP9 1530 aa9.47□□□□□ -0.89
VPS50-205ENST00000441602 CEP162Q5TB80 1403 aa9.46□□□□□ -0.89
VPS50-205ENST00000441602 PRXQ9BXM0 1461 aa9.44□□□□□ -0.9
VPS50-205ENST00000441602 POLA1P09884 1462 aaPredicted RBP9.43□□□□□ -0.9
VPS50-205ENST00000441602 MRC2Q9UBG0 1479 aa9.43□□□□□ -0.9
VPS50-205ENST00000441602 ABCA10Q8WWZ4 1543 aa9.43□□□□□ -0.9
VPS50-205ENST00000441602 DNAJC5BQ9UF47 199 aa9.43□□□□□ -0.9
VPS50-205ENST00000441602 URB2Q14146 1524 aaKnown RBP9.42□□□□□ -0.9
VPS50-205ENST00000441602 RAPGEF2Q9Y4G8 1499 aa9.41□□□□□ -0.9
VPS50-205ENST00000441602 CLIP1P30622 1438 aa9.41□□□□□ -0.9
VPS50-205ENST00000441602 TRIM26Q12899 539 aaPredicted RBP9.4□□□□□ -0.9
VPS50-205ENST00000441602 KIF21AQ7Z4S6 1674 aa9.4□□□□□ -0.9
VPS50-205ENST00000441602 ERCC6Q03468 1493 aa9.4□□□□□ -0.9
VPS50-205ENST00000441602 AEBP2Q6ZN18 517 aaPredicted RBP9.4□□□□□ -0.9
VPS50-205ENST00000441602 CARMIL1Q5VZK9 1371 aa9.39□□□□□ -0.91
VPS50-205ENST00000441602 IGF1RP08069 1367 aa9.39□□□□□ -0.91
VPS50-205ENST00000441602 RAD54L2Q9Y4B4 1467 aa9.38□□□□□ -0.91
VPS50-205ENST00000441602 APLP2Q06481 763 aa9.37□□□□□ -0.91
VPS50-205ENST00000441602 PCGF6Q9BYE7 350 aa9.36□□□□□ -0.91
VPS50-205ENST00000441602 CUL7Q14999 1698 aa9.36□□□□□ -0.91
VPS50-205ENST00000441602 GAPVD1Q14C86 1478 aa9.34□□□□□ -0.91
VPS50-205ENST00000441602 IFT140Q96RY7 1462 aa9.34□□□□□ -0.91
VPS50-205ENST00000441602 WDR62O43379 1518 aa9.33□□□□□ -0.92
VPS50-205ENST00000441602 VPS8Q8N3P4 1428 aa9.33□□□□□ -0.92
VPS50-205ENST00000441602 WDR97A6NE52 1622 aa9.32□□□□□ -0.92
VPS50-205ENST00000441602 TDRD9Q8NDG6 1382 aaKnown RBP9.31□□□□□ -0.92
VPS50-205ENST00000441602 ABCA5Q8WWZ7 1642 aa9.31□□□□□ -0.92
VPS50-205ENST00000441602 RANGAP1P46060 587 aaPredicted RBP9.3□□□□□ -0.92
VPS50-205ENST00000441602 TARBP1Q13395 1621 aaKnown RBP9.29□□□□□ -0.92
VPS50-205ENST00000441602 GRIN2BQ13224 1484 aa9.28□□□□□ -0.92
VPS50-205ENST00000441602 FHAD1B1AJZ9 1412 aa9.26□□□□□ -0.93
VPS50-205ENST00000441602 THOC2Q8NI27 1593 aaKnown RBP9.25□□□□□ -0.93
VPS50-205ENST00000441602 EFCAB5A4FU69 1503 aa9.25□□□□□ -0.93
VPS50-205ENST00000441602 ARAP1Q96P48 1450 aa9.24□□□□□ -0.93
VPS50-205ENST00000441602 PBRM1Q86U86 1689 aa9.23□□□□□ -0.93
VPS50-205ENST00000441602 ARHGAP35Q9NRY4 1499 aa9.23□□□□□ -0.93
VPS50-205ENST00000441602 AQRO60306 1485 aaKnown RBP eCLIP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms