RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SORL1Q92673 2214 aa7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 TRAV7A0A075B6U4 112 aa7.7□□□□□ -1.18
LIMCH1-203ENST00000396595 INSL3P51460 131 aa7.7□□□□□ -1.18
LIMCH1-203ENST00000396595 LMO4P61968 165 aa7.7□□□□□ -1.18
LIMCH1-203ENST00000396595 C1orf229Q6ZS94 237 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-203ENST00000396595 F8W735 103 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-203ENST00000396595 WISP2O76076 250 aa7.7□□□□□ -1.18
LIMCH1-203ENST00000396595 NOTCH2Q04721 2471 aa7.7□□□□□ -1.18
LIMCH1-203ENST00000396595 MAPKAPK5-AS1Q8N8E1 139 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 LINC00467Q9BRT7 94 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 H7C423 109 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 CRIP1P50238 77 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 TP73-AS1Q9UF72 201 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 CACNA1AO00555 2505 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 Q6ZTI0 123 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 Q8N976 141 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 LINC01548A6NM66 108 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 RNF185Q96GF1 192 aa7.69□□□□□ -1.18
LIMCH1-203ENST00000396595 LINC00308Q8TCZ7 52 aa7.68□□□□□ -1.18
LIMCH1-203ENST00000396595 HIVEP2P31629 2446 aa7.68□□□□□ -1.18
LIMCH1-203ENST00000396595 IBA57-AS1B1ANH7 110 aa7.68□□□□□ -1.18
LIMCH1-203ENST00000396595 SLPIP03973 132 aa7.68□□□□□ -1.18
LIMCH1-203ENST00000396595 Q8NA96 180 aa7.68□□□□□ -1.18
LIMCH1-203ENST00000396595 DEFB4AO15263 64 aa7.68□□□□□ -1.18
LIMCH1-203ENST00000396595 SONP18583 2426 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-203ENST00000396595 FAM30AQ9NZY2 134 aa7.67□□□□□ -1.18
LIMCH1-203ENST00000396595 M0QY20 66 aa7.67□□□□□ -1.18
LIMCH1-203ENST00000396595 ZNF106Q9H2Y7 1883 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-203ENST00000396595 TRBV6-5A0A0K0K1A5 114 aa7.66□□□□□ -1.18
LIMCH1-203ENST00000396595 REG3AQ06141 175 aa7.66□□□□□ -1.18
LIMCH1-203ENST00000396595 ADAMTS9Q9P2N4 1935 aa7.66□□□□□ -1.18
LIMCH1-203ENST00000396595 CXCL6P80162 114 aa7.66□□□□□ -1.18
LIMCH1-203ENST00000396595 PYGO1Q9Y3Y4 419 aa7.66□□□□□ -1.18
LIMCH1-203ENST00000396595 LY6LH3BQJ8 138 aa7.66□□□□□ -1.18
LIMCH1-203ENST00000396595 PRYO14603 147 aa7.66□□□□□ -1.18
LIMCH1-203ENST00000396595 LINC00269Q8N2A0 174 aa7.66□□□□□ -1.18
LIMCH1-203ENST00000396595 KLK5Q9Y337 293 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-203ENST00000396595 SMAD5-AS1Q9Y6J3 95 aa7.65□□□□□ -1.18
LIMCH1-203ENST00000396595 IGLV2-11P01706 119 aa7.65□□□□□ -1.18
LIMCH1-203ENST00000396595 C2orf91Q6ZV80 131 aa7.65□□□□□ -1.18
LIMCH1-203ENST00000396595 CHCHD10Q8WYQ3 142 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-203ENST00000396595 TMEM131Q92545 1883 aa7.65□□□□□ -1.19
LIMCH1-203ENST00000396595 C2CD3Q4AC94 2353 aa7.65□□□□□ -1.19
LIMCH1-203ENST00000396595 A8MZ25 164 aa7.65□□□□□ -1.19
LIMCH1-203ENST00000396595 DEFB114Q30KQ6 69 aa7.64□□□□□ -1.19
LIMCH1-203ENST00000396595 C4orf48Q5BLP8 95 aa7.64□□□□□ -1.19
LIMCH1-203ENST00000396595 TECTAO75443 2155 aa7.64□□□□□ -1.19
LIMCH1-203ENST00000396595 DNAJC9-AS1A6NH13 148 aa7.64□□□□□ -1.19
LIMCH1-203ENST00000396595 PTPN13Q12923 2485 aa7.64□□□□□ -1.19
LIMCH1-203ENST00000396595 TRBV7-6A0A0J9YX20 115 aa7.63□□□□□ -1.19
LIMCH1-203ENST00000396595 WFDC13Q8IUB5 93 aa7.63□□□□□ -1.19
LIMCH1-203ENST00000396595 C1orf158Q8N1D5 194 aa7.63□□□□□ -1.19
LIMCH1-203ENST00000396595 B9D2Q9BPU9 175 aa7.63□□□□□ -1.19
LIMCH1-203ENST00000396595 CCKP06307 115 aa7.63□□□□□ -1.19
LIMCH1-203ENST00000396595 NRACQ8N912 160 aa7.63□□□□□ -1.19
LIMCH1-203ENST00000396595 CUL9Q8IWT3 2517 aa7.63□□□□□ -1.19
LIMCH1-203ENST00000396595 ALPK3Q96L96 1907 aa7.63□□□□□ -1.19
LIMCH1-203ENST00000396595 LST1O00453 97 aa7.62□□□□□ -1.19
LIMCH1-203ENST00000396595 PCNX3Q9H6A9 2034 aa7.62□□□□□ -1.19
LIMCH1-203ENST00000396595 C14orf177Q52M58 125 aa7.62□□□□□ -1.19
LIMCH1-203ENST00000396595 C2orf16Q68DN1 1984 aa7.62□□□□□ -1.19
LIMCH1-203ENST00000396595 TRBV6-4A0A1B0GX49 114 aa7.62□□□□□ -1.19
LIMCH1-203ENST00000396595 CRYGDP07320 174 aa7.62□□□□□ -1.19
LIMCH1-203ENST00000396595 C9orf85Q96MD7 179 aa7.62□□□□□ -1.19
LIMCH1-203ENST00000396595 TRBV6-8A0A0A6YYG3 113 aa7.61□□□□□ -1.19
LIMCH1-203ENST00000396595 Q6YL49 198 aa7.61□□□□□ -1.19
LIMCH1-203ENST00000396595 KIAA1549LQ6ZVL6 1849 aa7.61□□□□□ -1.19
LIMCH1-203ENST00000396595 C3orf84H3BNL1 204 aa7.61□□□□□ -1.19
LIMCH1-203ENST00000396595 PLA2G2AP14555 144 aa7.61□□□□□ -1.19
LIMCH1-203ENST00000396595 C22orf34Q6ZV56 151 aa7.61□□□□□ -1.19
LIMCH1-203ENST00000396595 MYO18BQ8IUG5 2567 aa7.61□□□□□ -1.19
LIMCH1-203ENST00000396595 UBE2D2P62837 147 aa7.61□□□□□ -1.19
LIMCH1-203ENST00000396595 HIGD2AQ9BW72 106 aa7.61□□□□□ -1.19
LIMCH1-203ENST00000396595 C4orf26Q17RF5 130 aa7.6□□□□□ -1.19
LIMCH1-203ENST00000396595 KIAA1549Q9HCM3 1950 aa7.6□□□□□ -1.19
LIMCH1-203ENST00000396595 PCDH15Q96QU1 1955 aa7.6□□□□□ -1.19
LIMCH1-203ENST00000396595 TSHBP01222 138 aa7.6□□□□□ -1.19
LIMCH1-203ENST00000396595 TRBV7-7A0A0K0K1E9 115 aa7.59□□□□□ -1.19
LIMCH1-203ENST00000396595 RNASE3P12724 160 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-203ENST00000396595 C6orf99Q4VX62 202 aa7.59□□□□□ -1.19
LIMCH1-203ENST00000396595 BEAN1Q3B7T3 259 aa7.59□□□□□ -1.19
LIMCH1-203ENST00000396595 POLR2KP53803 58 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-203ENST00000396595 C11orf45Q8TAV5 145 aa7.59□□□□□ -1.2
LIMCH1-203ENST00000396595 IGKV2-24A0A0C4DH68 120 aa7.58□□□□□ -1.2
LIMCH1-203ENST00000396595 IGHV4-30-4P0DP06 118 aa7.58□□□□□ -1.2
LIMCH1-203ENST00000396595 IGHV4-31P0DP07 118 aa7.58□□□□□ -1.2
LIMCH1-203ENST00000396595 Q8N6K4 173 aa7.58□□□□□ -1.2
LIMCH1-203ENST00000396595 NAV3Q8IVL0 2385 aa7.58□□□□□ -1.2
LIMCH1-203ENST00000396595 CNFNQ9BYD5 112 aa7.58□□□□□ -1.2
LIMCH1-203ENST00000396595 OTOGLQ3ZCN5 2332 aa7.58□□□□□ -1.2
LIMCH1-203ENST00000396595 KLLNB2CW77 178 aa7.58□□□□□ -1.2
LIMCH1-203ENST00000396595 C11orf21Q9P2W6 132 aa7.58□□□□□ -1.2
LIMCH1-203ENST00000396595 HCFC1P51610 2035 aa7.57□□□□□ -1.2
LIMCH1-203ENST00000396595 ESRGQ1W209 222 aa7.57□□□□□ -1.2
LIMCH1-203ENST00000396595 A0A087WVE0 104 aa7.57□□□□□ -1.2
LIMCH1-203ENST00000396595 PROK1P58294 105 aa7.57□□□□□ -1.2
LIMCH1-203ENST00000396595 CELA1Q9UNI1 258 aa7.57□□□□□ -1.2
LIMCH1-203ENST00000396595 UBE2D4Q9Y2X8 147 aa7.57□□□□□ -1.2
LIMCH1-203ENST00000396595 XAGE1AQ9HD64 81 aa7.56□□□□□ -1.2
LIMCH1-203ENST00000396595 PRR9Q5T870 116 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms