RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SVBPQ8N300 66 aa14.29□□□□□ -0.12
CLN3-207ENST00000395653 TMEM18Q96B42 140 aa14.29□□□□□ -0.12
CLN3-207ENST00000395653 SNAPINO95295 136 aa14.28□□□□□ -0.12
CLN3-207ENST00000395653 CDK2AP2O75956 126 aa14.27□□□□□ -0.12
CLN3-207ENST00000395653 C14orf177Q52M58 125 aa14.27□□□□□ -0.12
CLN3-207ENST00000395653 MAP1LC3AQ9H492 121 aa14.27□□□□□ -0.12
CLN3-207ENST00000395653 CSDC2Q9Y534 153 aaKnown RBP14.27□□□□□ -0.12
CLN3-207ENST00000395653 GCSHP23434 173 aa14.26□□□□□ -0.13
CLN3-207ENST00000395653 COX19Q49B96 90 aa14.26□□□□□ -0.13
CLN3-207ENST00000395653 DGAT2L7PQ6IED9 249 aa14.26□□□□□ -0.13
CLN3-207ENST00000395653 GNB1LQ9BYB4 327 aa14.26□□□□□ -0.13
CLN3-207ENST00000395653 CDC42SE2Q9NRR3 84 aa14.26□□□□□ -0.13
CLN3-207ENST00000395653 UBE2D4Q9Y2X8 147 aa14.26□□□□□ -0.13
CLN3-207ENST00000395653 APOBP04114 4563 aaKnown RBP14.26□□□□□ -0.13
CLN3-207ENST00000395653 IGKV3OR2-268A0A0C4DH90 116 aa14.25□□□□□ -0.13
CLN3-207ENST00000395653 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.24□□□□□ -0.13
CLN3-207ENST00000395653 USP17L23D6RBM5 183 aa14.24□□□□□ -0.13
CLN3-207ENST00000395653 ZNF664Q8N3J9 261 aa14.24□□□□□ -0.13
CLN3-207ENST00000395653 TIMM21Q9BVV7 248 aa14.24□□□□□ -0.13
CLN3-207ENST00000395653 RYR1P21817 5038 aa14.24□□□□□ -0.13
CLN3-207ENST00000395653 RAB5AP20339 215 aa14.24□□□□□ -0.13
CLN3-207ENST00000395653 KRTAP10-1P60331 282 aa14.24□□□□□ -0.13
CLN3-207ENST00000395653 LOC389332A0A1B0GUA5 103 aa14.23□□□□□ -0.13
CLN3-207ENST00000395653 CHCHD10Q8WYQ3 142 aaPredicted RBP14.23□□□□□ -0.13
CLN3-207ENST00000395653 MT-ND6P03923 174 aa14.22□□□□□ -0.13
CLN3-207ENST00000395653 Q8N8P6 123 aa14.22□□□□□ -0.13
CLN3-207ENST00000395653 GAGE12HA6NDE8 117 aa14.21□□□□□ -0.13
CLN3-207ENST00000395653 RPL39P62891 51 aaKnown RBP14.21□□□□□ -0.13
CLN3-207ENST00000395653 KIAA1644Q3SXP7 199 aa14.21□□□□□ -0.13
CLN3-207ENST00000395653 LINC00959A0A1B0GUT2 108 aa14.2□□□□□ -0.14
CLN3-207ENST00000395653 SPANXA1Q9NS26 97 aa14.2□□□□□ -0.14
CLN3-207ENST00000395653 K7EMI3 77 aa14.19□□□□□ -0.14
CLN3-207ENST00000395653 PRSS1P07477 247 aa14.18□□□□□ -0.14
CLN3-207ENST00000395653 SS18Q15532 418 aa14.18□□□□□ -0.14
CLN3-207ENST00000395653 Q6ZUT4 128 aa14.18□□□□□ -0.14
CLN3-207ENST00000395653 NXT2Q9NPJ8 142 aaKnown RBP14.18□□□□□ -0.14
CLN3-207ENST00000395653 HSPG2P98160 4391 aa14.17□□□□□ -0.14
CLN3-207ENST00000395653 TGIF2-C20orf24A0A0A6YYL0 155 aa14.16□□□□□ -0.14
CLN3-207ENST00000395653 CCL25O15444 150 aa14.16□□□□□ -0.14
CLN3-207ENST00000395653 ORMDL2Q53FV1 153 aa14.16□□□□□ -0.14
CLN3-207ENST00000395653 MRPL18Q9H0U6 180 aaKnown RBP14.16□□□□□ -0.14
CLN3-207ENST00000395653 XCL1P47992 114 aa14.15□□□□□ -0.14
CLN3-207ENST00000395653 MRPS36P82909 103 aaKnown RBP14.15□□□□□ -0.14
CLN3-207ENST00000395653 FOXI1Q12951 378 aa14.15□□□□□ -0.14
CLN3-207ENST00000395653 SLC7A5P1Q8MH63 180 aa14.15□□□□□ -0.14
CLN3-207ENST00000395653 ALKBH7Q9BT30 221 aaPredicted RBP14.15□□□□□ -0.14
CLN3-207ENST00000395653 IFI27P40305 119 aaPredicted RBP14.15□□□□□ -0.14
CLN3-207ENST00000395653 RNASE13Q5GAN3 156 aaKnown RBP14.15□□□□□ -0.14
CLN3-207ENST00000395653 CFAP161Q6P656 301 aa14.15□□□□□ -0.14
CLN3-207ENST00000395653 FAM104AQ969W3 186 aa14.15□□□□□ -0.14
CLN3-207ENST00000395653 PYGO1Q9Y3Y4 419 aa14.15□□□□□ -0.14
CLN3-207ENST00000395653 C1orf196B1AJZ1 125 aa14.14□□□□□ -0.15
CLN3-207ENST00000395653 FABP9Q0Z7S8 132 aa14.14□□□□□ -0.15
CLN3-207ENST00000395653 CD164L2Q6UWJ8 174 aa14.13□□□□□ -0.15
CLN3-207ENST00000395653 C15orf56Q8N910 161 aa14.13□□□□□ -0.15
CLN3-207ENST00000395653 CYSLTR1Q9Y271 337 aa14.13□□□□□ -0.15
CLN3-207ENST00000395653 DNAH8Q96JB1 4490 aa14.13□□□□□ -0.15
CLN3-207ENST00000395653 hDV102S1A0JD36 115 aa14.12□□□□□ -0.15
CLN3-207ENST00000395653 XGP55808 180 aa14.12□□□□□ -0.15
CLN3-207ENST00000395653 C2orf66Q6UXQ4 117 aa14.12□□□□□ -0.15
CLN3-207ENST00000395653 TRAV13-1A0A0B4J241 112 aa14.11□□□□□ -0.15
CLN3-207ENST00000395653 LINC01620Q4KN68 170 aa14.11□□□□□ -0.15
CLN3-207ENST00000395653 OPRPNQ99935 248 aaPredicted RBP14.11□□□□□ -0.15
CLN3-207ENST00000395653 TRAPPC1Q9Y5R8 145 aa14.11□□□□□ -0.15
CLN3-207ENST00000395653 CNBPP62633 177 aaKnown RBP14.1□□□□□ -0.15
CLN3-207ENST00000395653 PRSS3P2Q8NHM4 247 aa14.1□□□□□ -0.15
CLN3-207ENST00000395653 YPEL4Q96NS1 127 aa14.1□□□□□ -0.15
CLN3-207ENST00000395653 AP5S1Q9NUS5 200 aa14.1□□□□□ -0.15
CLN3-207ENST00000395653 G0S2P27469 103 aa14.09□□□□□ -0.15
CLN3-207ENST00000395653 Q6ZSA8 131 aa14.08□□□□□ -0.15
CLN3-207ENST00000395653 C9orf163Q8N9P6 203 aa14.08□□□□□ -0.15
CLN3-207ENST00000395653 IGLV4-3A0A075B6K6 122 aa14.07□□□□□ -0.16
CLN3-207ENST00000395653 GVQW2A0A096LPI5 108 aaPredicted RBP14.07□□□□□ -0.16
CLN3-207ENST00000395653 FAM30AQ9NZY2 134 aa14.07□□□□□ -0.16
CLN3-207ENST00000395653 IGHV1-58A0A0C4DH39 117 aa14.07□□□□□ -0.16
CLN3-207ENST00000395653 LINC01546A6NGU7 62 aa14.07□□□□□ -0.16
CLN3-207ENST00000395653 IFITM10A6NMD0 228 aa14.07□□□□□ -0.16
CLN3-207ENST00000395653 NPSP0C0P6 89 aa14.07□□□□□ -0.16
CLN3-207ENST00000395653 TMEM141Q96I45 108 aa14.07□□□□□ -0.16
CLN3-207ENST00000395653 SMCO4Q9NRQ5 59 aa14.07□□□□□ -0.16
CLN3-207ENST00000395653 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.06□□□□□ -0.16
CLN3-207ENST00000395653 COX7A2LO14548 114 aa14.05□□□□□ -0.16
CLN3-207ENST00000395653 SLPIP03973 132 aa14.05□□□□□ -0.16
CLN3-207ENST00000395653 HIGD2BQ4VC39 106 aa14.05□□□□□ -0.16
CLN3-207ENST00000395653 IGIPA6NJ69 53 aa14.04□□□□□ -0.16
CLN3-207ENST00000395653 CBLN2Q8IUK8 224 aa14.04□□□□□ -0.16
CLN3-207ENST00000395653 Q8N1X5 172 aa14.04□□□□□ -0.16
CLN3-207ENST00000395653 TOMM6Q96B49 74 aa14.04□□□□□ -0.16
CLN3-207ENST00000395653 Q6ZN92 141 aa14.03□□□□□ -0.16
CLN3-207ENST00000395653 TEX43Q6ZNM6 134 aa14.03□□□□□ -0.16
CLN3-207ENST00000395653 MALP21145 153 aa14.02□□□□□ -0.16
CLN3-207ENST00000395653 FA2HQ7L5A8 372 aa14.02□□□□□ -0.16
CLN3-207ENST00000395653 C18orf32Q8TCD1 76 aa14.02□□□□□ -0.16
CLN3-207ENST00000395653 TIMM17AQ99595 171 aa14.02□□□□□ -0.16
CLN3-207ENST00000395653 KRTAP17-1Q9BYP8 105 aa14.02□□□□□ -0.16
CLN3-207ENST00000395653 LINC01549A6NIU2 74 aa14.01□□□□□ -0.17
CLN3-207ENST00000395653 AMELXQ99217 191 aa14.01□□□□□ -0.17
CLN3-207ENST00000395653 C2orf88Q9BSF0 95 aa14.01□□□□□ -0.17
CLN3-207ENST00000395653 IGHV3OR16-9A0A0B4J2B5 98 aa14□□□□□ -0.17
CLN3-207ENST00000395653 HAMPP81172 84 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms