RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 C7orf77A4D0Y5 90 aa12.2□□□□□ -0.46
CKS1B-203ENST00000368439 PPP1R2P9O14990 202 aa12.2□□□□□ -0.46
CKS1B-203ENST00000368439 TMEM101Q96IK0 257 aa12.2□□□□□ -0.46
CKS1B-203ENST00000368439 BTF3L4Q96K17 158 aa12.2□□□□□ -0.46
CKS1B-203ENST00000368439 C20orf78Q9BR46 151 aa12.2□□□□□ -0.46
CKS1B-203ENST00000368439 S100A8P05109 93 aa12.19□□□□□ -0.46
CKS1B-203ENST00000368439 CKS2P33552 79 aa12.19□□□□□ -0.46
CKS1B-203ENST00000368439 RPL32P62910 135 aaKnown RBP12.19□□□□□ -0.46
CKS1B-203ENST00000368439 PNRC1Q12796 327 aaPredicted RBP12.19□□□□□ -0.46
CKS1B-203ENST00000368439 SDIM1Q6ZPB5 146 aa12.19□□□□□ -0.46
CKS1B-203ENST00000368439 LINC00528Q8N1L1 170 aa12.19□□□□□ -0.46
CKS1B-203ENST00000368439 LINC00959A0A1B0GUT2 108 aa12.18□□□□□ -0.46
CKS1B-203ENST00000368439 D6R8Y8 96 aa12.18□□□□□ -0.46
CKS1B-203ENST00000368439 TNFRSF6BO95407 300 aa12.18□□□□□ -0.46
CKS1B-203ENST00000368439 FCER1GP30273 86 aa12.18□□□□□ -0.46
CKS1B-203ENST00000368439 FOXI1Q12951 378 aa12.18□□□□□ -0.46
CKS1B-203ENST00000368439 ATP5L2Q7Z4Y8 100 aa12.18□□□□□ -0.46
CKS1B-203ENST00000368439 FLG2Q5D862 2391 aaPredicted RBP12.17□□□□□ -0.46
CKS1B-203ENST00000368439 F8W036 122 aa12.17□□□□□ -0.46
CKS1B-203ENST00000368439 ZNF664Q8N3J9 261 aa12.17□□□□□ -0.46
CKS1B-203ENST00000368439 KIR2DL4Q99706 377 aa12.17□□□□□ -0.46
CKS1B-203ENST00000368439 UBE2D4Q9Y2X8 147 aa12.17□□□□□ -0.46
CKS1B-203ENST00000368439 HERC1Q15751 4861 aa12.16□□□□□ -0.46
CKS1B-203ENST00000368439 PANO1I0J062 215 aa12.16□□□□□ -0.46
CKS1B-203ENST00000368439 NPYP01303 97 aa12.16□□□□□ -0.46
CKS1B-203ENST00000368439 ANAPC16Q96DE5 110 aa12.16□□□□□ -0.46
CKS1B-203ENST00000368439 CSDC2Q9Y534 153 aaKnown RBP12.16□□□□□ -0.46
CKS1B-203ENST00000368439 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.16□□□□□ -0.46
CKS1B-203ENST00000368439 KRTAP10-4P60372 401 aaPredicted RBP12.15□□□□□ -0.46
CKS1B-203ENST00000368439 CFAP161Q6P656 301 aa12.15□□□□□ -0.46
CKS1B-203ENST00000368439 PHOX2AO14813 284 aa12.14□□□□□ -0.47
CKS1B-203ENST00000368439 CCL25O15444 150 aa12.14□□□□□ -0.47
CKS1B-203ENST00000368439 MT-ND4LP03901 98 aa12.14□□□□□ -0.47
CKS1B-203ENST00000368439 ADCYAP1P18509 176 aa12.14□□□□□ -0.47
CKS1B-203ENST00000368439 XCL1P47992 114 aa12.14□□□□□ -0.47
CKS1B-203ENST00000368439 SMIM2Q9BVW6 85 aa12.14□□□□□ -0.47
CKS1B-203ENST00000368439 AP5S1Q9NUS5 200 aa12.14□□□□□ -0.47
CKS1B-203ENST00000368439 GVQW2A0A096LPI5 108 aaPredicted RBP12.13□□□□□ -0.47
CKS1B-203ENST00000368439 PPBPP02775 128 aa12.13□□□□□ -0.47
CKS1B-203ENST00000368439 PLA2G1BP04054 148 aaKnown RBP12.13□□□□□ -0.47
CKS1B-203ENST00000368439 CIRBPQ14011 172 aaKnown RBP12.13□□□□□ -0.47
CKS1B-203ENST00000368439 HIGD2BQ4VC39 106 aa12.13□□□□□ -0.47
CKS1B-203ENST00000368439 TIMM21Q9BVV7 248 aa12.13□□□□□ -0.47
CKS1B-203ENST00000368439 FAM104AQ969W3 186 aa12.12□□□□□ -0.47
CKS1B-203ENST00000368439 PKHD1L1Q86WI1 4243 aa12.12□□□□□ -0.47
CKS1B-203ENST00000368439 IGHV3-64A0A075B6Q5 118 aa12.11□□□□□ -0.47
CKS1B-203ENST00000368439 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.11□□□□□ -0.47
CKS1B-203ENST00000368439 SS18Q15532 418 aa12.11□□□□□ -0.47
CKS1B-203ENST00000368439 UQCC3Q6UW78 93 aa12.11□□□□□ -0.47
CKS1B-203ENST00000368439 CD164L2Q6UWJ8 174 aa12.11□□□□□ -0.47
CKS1B-203ENST00000368439 ORMDL3Q8N138 153 aa12.11□□□□□ -0.47
CKS1B-203ENST00000368439 TCAPO15273 167 aa12.1□□□□□ -0.47
CKS1B-203ENST00000368439 RPL39P62891 51 aaKnown RBP12.1□□□□□ -0.47
CKS1B-203ENST00000368439 RNASE13Q5GAN3 156 aaKnown RBP12.1□□□□□ -0.47
CKS1B-203ENST00000368439 TMEM136Q6ZRR5 245 aa12.1□□□□□ -0.47
CKS1B-203ENST00000368439 TMEM218A2RU14 115 aa12.09□□□□□ -0.47
CKS1B-203ENST00000368439 SMAGPQ0VAQ4 97 aa12.09□□□□□ -0.47
CKS1B-203ENST00000368439 Q6ZUT4 128 aa12.09□□□□□ -0.47
CKS1B-203ENST00000368439 TMEM18Q96B42 140 aa12.09□□□□□ -0.47
CKS1B-203ENST00000368439 PRELID3AQ96N28 172 aa12.09□□□□□ -0.47
CKS1B-203ENST00000368439 PRSS47A8MTI9 375 aa12.08□□□□□ -0.48
CKS1B-203ENST00000368439 IGHV1-58A0A0C4DH39 117 aa12.07□□□□□ -0.48
CKS1B-203ENST00000368439 C1orf196B1AJZ1 125 aa12.07□□□□□ -0.48
CKS1B-203ENST00000368439 FAT3Q8TDW7 4589 aa12.06□□□□□ -0.48
CKS1B-203ENST00000368439 CHTF8P0CG12 524 aa12.06□□□□□ -0.48
CKS1B-203ENST00000368439 SPACA4Q8TDM5 124 aa12.06□□□□□ -0.48
CKS1B-203ENST00000368439 IMMP2LQ96T52 175 aa12.06□□□□□ -0.48
CKS1B-203ENST00000368439 LRP1Q07954 4544 aaKnown RBP12.06□□□□□ -0.48
CKS1B-203ENST00000368439 DMBT1Q9UGM3 2413 aaPredicted RBP12.06□□□□□ -0.48
CKS1B-203ENST00000368439 LINC00526Q96FQ7 95 aa12.05□□□□□ -0.48
CKS1B-203ENST00000368439 SPANXA1Q9NS26 97 aa12.05□□□□□ -0.48
CKS1B-203ENST00000368439 LAMTOR2Q9Y2Q5 125 aa12.05□□□□□ -0.48
CKS1B-203ENST00000368439 TRAV13-1A0A0B4J241 112 aa12.04□□□□□ -0.48
CKS1B-203ENST00000368439 COX6A2Q02221 97 aa12.04□□□□□ -0.48
CKS1B-203ENST00000368439 PRSS3P2Q8NHM4 247 aa12.04□□□□□ -0.48
CKS1B-203ENST00000368439 OPRPNQ99935 248 aaPredicted RBP12.04□□□□□ -0.48
CKS1B-203ENST00000368439 MRPS36P82909 103 aaKnown RBP12.03□□□□□ -0.48
CKS1B-203ENST00000368439 SEC11CQ9BY50 192 aa12.03□□□□□ -0.48
CKS1B-203ENST00000368439 A0A087WYN8 130 aa12.02□□□□□ -0.49
CKS1B-203ENST00000368439 CTDSP1Q9GZU7 261 aa12.02□□□□□ -0.49
CKS1B-203ENST00000368439 LOC389332A0A1B0GUA5 103 aa12.01□□□□□ -0.49
CKS1B-203ENST00000368439 COX7A2LO14548 114 aa12.01□□□□□ -0.49
CKS1B-203ENST00000368439 RAB5AP20339 215 aa12.01□□□□□ -0.49
CKS1B-203ENST00000368439 COMMD7Q86VX2 200 aa12.01□□□□□ -0.49
CKS1B-203ENST00000368439 Q8N8P6 123 aa12□□□□□ -0.49
CKS1B-203ENST00000368439 MAP1LC3AQ9H492 121 aa12□□□□□ -0.49
CKS1B-203ENST00000368439 PLAC8Q9NZF1 115 aa12□□□□□ -0.49
CKS1B-203ENST00000368439 PYGO1Q9Y3Y4 419 aa12□□□□□ -0.49
CKS1B-203ENST00000368439 RPL37AP61513 92 aaKnown RBP11.99□□□□□ -0.49
CKS1B-203ENST00000368439 C10orf91Q5T1B1 145 aa11.99□□□□□ -0.49
CKS1B-203ENST00000368439 C5orf38Q86SI9 138 aa11.99□□□□□ -0.49
CKS1B-203ENST00000368439 IGLV4-69A0A075B6H9 119 aa11.98□□□□□ -0.49
CKS1B-203ENST00000368439 TRAV9-1A0A075B6T8 112 aa11.98□□□□□ -0.49
CKS1B-203ENST00000368439 A0A096LNI7 61 aa11.98□□□□□ -0.49
CKS1B-203ENST00000368439 ZNF561-AS1K7EIQ3 104 aa11.98□□□□□ -0.49
CKS1B-203ENST00000368439 MALP21145 153 aa11.98□□□□□ -0.49
CKS1B-203ENST00000368439 SYCNQ0VAF6 134 aa11.98□□□□□ -0.49
CKS1B-203ENST00000368439 CARD19Q96LW7 228 aa11.98□□□□□ -0.49
CKS1B-203ENST00000368439 IGLV4-3A0A075B6K6 122 aa11.97□□□□□ -0.49
CKS1B-203ENST00000368439 IGHV3OR16-9A0A0B4J2B5 98 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 138.7 ms