RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 KMT2BQ9UMN6 2715 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 TRBV10-1A0A0K0K1A3 114 aa14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 A4D1N5 150 aa14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 K7EQD1 137 aa14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 UNC79Q9P2D8 2635 aa14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 LOC107984156A0A0G2JMH3 177 aa14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 PLAC8L1A1L4L8 177 aa14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 RPL36AP83881 106 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 MUSTN1Q8IVN3 82 aa14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 ARL17AQ8IVW1 177 aa14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 RPL36ALQ969Q0 106 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-203ENST00000359902 SMAGPQ0VAQ4 97 aa14.88□□□□□ -0.03
CCDC88B-203ENST00000359902 SMR3AQ99954 134 aa14.88□□□□□ -0.03
CCDC88B-203ENST00000359902 PRO1854Q9UHT4 67 aa14.88□□□□□ -0.03
CCDC88B-203ENST00000359902 GAGE12HA6NDE8 117 aa14.88□□□□□ -0.03
CCDC88B-203ENST00000359902 SPINK8P0C7L1 97 aa14.88□□□□□ -0.03
CCDC88B-203ENST00000359902 MTURNQ8N3F0 131 aa14.88□□□□□ -0.03
CCDC88B-203ENST00000359902 JMJD1CQ15652 2540 aa14.88□□□□□ -0.03
CCDC88B-203ENST00000359902 DGAT2L7PQ6IED9 249 aa14.87□□□□□ -0.03
CCDC88B-203ENST00000359902 GEMIN7Q9H840 131 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-203ENST00000359902 EIF4EBP3O60516 100 aaPredicted RBP14.87□□□□□ -0.03
CCDC88B-203ENST00000359902 NTM-AS1Q6ZSK4 140 aa14.87□□□□□ -0.03
CCDC88B-203ENST00000359902 CSNK1G2-AS1Q8NCQ2 148 aa14.87□□□□□ -0.03
CCDC88B-203ENST00000359902 LITAFQ99732 161 aa14.87□□□□□ -0.03
CCDC88B-203ENST00000359902 A0A1B0GV72 72 aa14.86□□□□□ -0.03
CCDC88B-203ENST00000359902 A8MZ25 164 aa14.86□□□□□ -0.03
CCDC88B-203ENST00000359902 LINC00694P0DN24 101 aa14.86□□□□□ -0.03
CCDC88B-203ENST00000359902 DAZ4Q86SG3 579 aaKnown RBP14.86□□□□□ -0.03
CCDC88B-203ENST00000359902 C16orf74Q96GX8 76 aa14.86□□□□□ -0.03
CCDC88B-203ENST00000359902 DAZ3Q9NR90 486 aaKnown RBP14.86□□□□□ -0.03
CCDC88B-203ENST00000359902 NDUFA12Q9UI09 145 aa14.86□□□□□ -0.03
CCDC88B-203ENST00000359902 TIRAPP58753 221 aa14.86□□□□□ -0.03
CCDC88B-203ENST00000359902 PSMB2P49721 201 aa14.85□□□□□ -0.03
CCDC88B-203ENST00000359902 SH2D6Q7Z4S9 175 aa14.85□□□□□ -0.03
CCDC88B-203ENST00000359902 CDKN2A-AS1Q9UH64 79 aa14.85□□□□□ -0.03
CCDC88B-203ENST00000359902 NOTCH3Q9UM47 2321 aa14.85□□□□□ -0.03
CCDC88B-203ENST00000359902 ETDBQ3ZM63 59 aa14.84□□□□□ -0.03
CCDC88B-203ENST00000359902 IGLV5-45A0A087WSX0 123 aa14.84□□□□□ -0.03
CCDC88B-203ENST00000359902 GAGE12JA6NER3 117 aa14.84□□□□□ -0.03
CCDC88B-203ENST00000359902 GAGE4Q13068 117 aa14.84□□□□□ -0.03
CCDC88B-203ENST00000359902 GAGE5Q13069 117 aa14.84□□□□□ -0.03
CCDC88B-203ENST00000359902 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-203ENST00000359902 C1QTNF4Q9BXJ3 329 aa14.84□□□□□ -0.03
CCDC88B-203ENST00000359902 KRTAP10-3P60369 221 aa14.83□□□□□ -0.03
CCDC88B-203ENST00000359902 GAGE7O76087 117 aa14.83□□□□□ -0.04
CCDC88B-203ENST00000359902 GAGE12FP0CL80 117 aa14.83□□□□□ -0.04
CCDC88B-203ENST00000359902 GAGE12GP0CL81 117 aa14.83□□□□□ -0.04
CCDC88B-203ENST00000359902 GAGE12IP0CL82 117 aa14.83□□□□□ -0.04
CCDC88B-203ENST00000359902 COX6A2Q02221 97 aa14.83□□□□□ -0.04
CCDC88B-203ENST00000359902 SPATA25Q9BR10 227 aa14.83□□□□□ -0.04
CCDC88B-203ENST00000359902 A0A0B4J2C4 111 aa14.82□□□□□ -0.04
CCDC88B-203ENST00000359902 ADAMTSL4-AS1Q5T5F5 129 aa14.82□□□□□ -0.04
CCDC88B-203ENST00000359902 LYRM7Q5U5X0 104 aa14.82□□□□□ -0.04
CCDC88B-203ENST00000359902 SBSPONQ8IVN8 264 aa14.82□□□□□ -0.04
CCDC88B-203ENST00000359902 OVOL2Q9BRP0 275 aa14.82□□□□□ -0.04
CCDC88B-203ENST00000359902 CSDC2Q9Y534 153 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-203ENST00000359902 TRGV2A0A075B6R0 118 aa14.81□□□□□ -0.04
CCDC88B-203ENST00000359902 IGHV3-33P01772 117 aa14.81□□□□□ -0.04
CCDC88B-203ENST00000359902 ZFAND6Q6FIF0 208 aa14.81□□□□□ -0.04
CCDC88B-203ENST00000359902 TCL1BO95988 128 aa14.8□□□□□ -0.04
CCDC88B-203ENST00000359902 SMCPP49901 116 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-203ENST00000359902 LINC00242Q5T6M2 205 aa14.8□□□□□ -0.04
CCDC88B-203ENST00000359902 TMEM101Q96IK0 257 aa14.8□□□□□ -0.04
CCDC88B-203ENST00000359902 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-203ENST00000359902 SPANXDQ9BXN6 97 aa14.8□□□□□ -0.04
CCDC88B-203ENST00000359902 SPANXCQ9NY87 97 aa14.8□□□□□ -0.04
CCDC88B-203ENST00000359902 FASNP49327 2511 aaKnown RBP14.79□□□□□ -0.04
CCDC88B-203ENST00000359902 PRSS2P07478 247 aa14.79□□□□□ -0.04
CCDC88B-203ENST00000359902 HIVEP2P31629 2446 aa14.79□□□□□ -0.04
CCDC88B-203ENST00000359902 TRBV20-1A0A075B6N2 111 aa14.78□□□□□ -0.04
CCDC88B-203ENST00000359902 FAM19A3Q7Z5A8 133 aa14.78□□□□□ -0.04
CCDC88B-203ENST00000359902 HERVK_113P63121 156 aa14.78□□□□□ -0.04
CCDC88B-203ENST00000359902 ERG28Q9UKR5 140 aa14.78□□□□□ -0.04
CCDC88B-203ENST00000359902 LOC100131303A0A0U1RQF7 123 aa14.77□□□□□ -0.05
CCDC88B-203ENST00000359902 TRBV6-4A0A1B0GX49 114 aa14.77□□□□□ -0.05
CCDC88B-203ENST00000359902 LY6G6DO95868 133 aa14.77□□□□□ -0.05
CCDC88B-203ENST00000359902 SCGB1C2P0DMR2 95 aa14.77□□□□□ -0.05
CCDC88B-203ENST00000359902 CDC42SE2Q9NRR3 84 aa14.77□□□□□ -0.05
CCDC88B-203ENST00000359902 MIAQ16674 131 aa14.76□□□□□ -0.05
CCDC88B-203ENST00000359902 IGLV5-39A0A0G2JS06 123 aa14.75□□□□□ -0.05
CCDC88B-203ENST00000359902 LINC00482Q8N8I6 264 aa14.75□□□□□ -0.05
CCDC88B-203ENST00000359902 TRAV13-1A0A0B4J241 112 aa14.75□□□□□ -0.05
CCDC88B-203ENST00000359902 H7C2G1 150 aa14.75□□□□□ -0.05
CCDC88B-203ENST00000359902 NDUFA1O15239 70 aa14.75□□□□□ -0.05
CCDC88B-203ENST00000359902 PF4P02776 101 aa14.75□□□□□ -0.05
CCDC88B-203ENST00000359902 TIMM17BO60830 172 aa14.74□□□□□ -0.05
CCDC88B-203ENST00000359902 TMEM243Q9BU79 118 aa14.74□□□□□ -0.05
CCDC88B-203ENST00000359902 TRGV4A0A0C4DH28 118 aa14.74□□□□□ -0.05
CCDC88B-203ENST00000359902 INSL3P51460 131 aa14.73□□□□□ -0.05
CCDC88B-203ENST00000359902 FHL2Q14192 279 aa14.73□□□□□ -0.05
CCDC88B-203ENST00000359902 C2CD3Q4AC94 2353 aa14.73□□□□□ -0.05
CCDC88B-203ENST00000359902 SMIM1B2RUZ4 78 aa14.71□□□□□ -0.05
CCDC88B-203ENST00000359902 UBE2L6O14933 153 aa14.71□□□□□ -0.05
CCDC88B-203ENST00000359902 CKS1BP61024 79 aa14.71□□□□□ -0.05
CCDC88B-203ENST00000359902 NPC2P61916 151 aa14.71□□□□□ -0.05
CCDC88B-203ENST00000359902 ATP6V0E2Q8NHE4 81 aa14.7□□□□□ -0.06
CCDC88B-203ENST00000359902 RNF183Q96D59 192 aa14.7□□□□□ -0.06
CCDC88B-203ENST00000359902 Q1RN00 199 aa14.69□□□□□ -0.06
CCDC88B-203ENST00000359902 Q9H8V8 135 aa14.69□□□□□ -0.06
CCDC88B-203ENST00000359902 F5H768 121 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms