RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 TMEM18Q96B42 140 aa11.16□□□□□ -0.62
CLN3-203ENST00000357806 NDUFA5Q16718 116 aa11.15□□□□□ -0.62
CLN3-203ENST00000357806 RPS10P5Q9NQ39 176 aa11.15□□□□□ -0.62
CLN3-203ENST00000357806 USP17L23D6RBM5 183 aa11.14□□□□□ -0.63
CLN3-203ENST00000357806 DGAT2L7PQ6IED9 249 aa11.14□□□□□ -0.63
CLN3-203ENST00000357806 KRTAP10-1P60331 282 aa11.13□□□□□ -0.63
CLN3-203ENST00000357806 MAP1LC3AQ9H492 121 aa11.13□□□□□ -0.63
CLN3-203ENST00000357806 UBE2D4Q9Y2X8 147 aa11.13□□□□□ -0.63
CLN3-203ENST00000357806 APOC3P02656 99 aa11.12□□□□□ -0.63
CLN3-203ENST00000357806 CDC42SE2Q9NRR3 84 aa11.12□□□□□ -0.63
CLN3-203ENST00000357806 CSDC2Q9Y534 153 aaKnown RBP11.12□□□□□ -0.63
CLN3-203ENST00000357806 PRSS47A8MTI9 375 aa11.12□□□□□ -0.63
CLN3-203ENST00000357806 SVBPQ8N300 66 aa11.12□□□□□ -0.63
CLN3-203ENST00000357806 ZNF664Q8N3J9 261 aa11.12□□□□□ -0.63
CLN3-203ENST00000357806 APOBP04114 4563 aaKnown RBP11.11□□□□□ -0.63
CLN3-203ENST00000357806 SNAPINO95295 136 aa11.11□□□□□ -0.63
CLN3-203ENST00000357806 RAB5AP20339 215 aa11.11□□□□□ -0.63
CLN3-203ENST00000357806 CHCHD10Q8WYQ3 142 aaPredicted RBP11.11□□□□□ -0.63
CLN3-203ENST00000357806 TIMM21Q9BVV7 248 aa11.11□□□□□ -0.63
CLN3-203ENST00000357806 LOC389332A0A1B0GUA5 103 aa11.1□□□□□ -0.63
CLN3-203ENST00000357806 GAGE12HA6NDE8 117 aa11.1□□□□□ -0.63
CLN3-203ENST00000357806 COX19Q49B96 90 aa11.1□□□□□ -0.63
CLN3-203ENST00000357806 GNB1LQ9BYB4 327 aa11.1□□□□□ -0.63
CLN3-203ENST00000357806 HSPG2P98160 4391 aa11.09□□□□□ -0.63
CLN3-203ENST00000357806 LINC00959A0A1B0GUT2 108 aa11.09□□□□□ -0.63
CLN3-203ENST00000357806 HERC2O95714 4834 aa11.09□□□□□ -0.63
CLN3-203ENST00000357806 RPL39P62891 51 aaKnown RBP11.08□□□□□ -0.64
CLN3-203ENST00000357806 SS18Q15532 418 aa11.08□□□□□ -0.64
CLN3-203ENST00000357806 MT-ND6P03923 174 aa11.07□□□□□ -0.64
CLN3-203ENST00000357806 PRSS1P07477 247 aa11.07□□□□□ -0.64
CLN3-203ENST00000357806 Q6ZUT4 128 aa11.07□□□□□ -0.64
CLN3-203ENST00000357806 Q8N8P6 123 aa11.07□□□□□ -0.64
CLN3-203ENST00000357806 SPANXA1Q9NS26 97 aa11.07□□□□□ -0.64
CLN3-203ENST00000357806 RYR1P21817 5038 aa11.07□□□□□ -0.64
CLN3-203ENST00000357806 CCL25O15444 150 aa11.06□□□□□ -0.64
CLN3-203ENST00000357806 XCL1P47992 114 aa11.06□□□□□ -0.64
CLN3-203ENST00000357806 KIAA1644Q3SXP7 199 aa11.06□□□□□ -0.64
CLN3-203ENST00000357806 hDV102S1A0JD36 115 aa11.06□□□□□ -0.64
CLN3-203ENST00000357806 K7EMI3 77 aa11.06□□□□□ -0.64
CLN3-203ENST00000357806 RNASE13Q5GAN3 156 aaKnown RBP11.06□□□□□ -0.64
CLN3-203ENST00000357806 CFAP161Q6P656 301 aa11.06□□□□□ -0.64
CLN3-203ENST00000357806 NXT2Q9NPJ8 142 aaKnown RBP11.06□□□□□ -0.64
CLN3-203ENST00000357806 IFI27P40305 119 aaPredicted RBP11.05□□□□□ -0.64
CLN3-203ENST00000357806 FOXI1Q12951 378 aa11.05□□□□□ -0.64
CLN3-203ENST00000357806 LINC01620Q4KN68 170 aa11.05□□□□□ -0.64
CLN3-203ENST00000357806 C1orf196B1AJZ1 125 aa11.04□□□□□ -0.64
CLN3-203ENST00000357806 XGP55808 180 aa11.04□□□□□ -0.64
CLN3-203ENST00000357806 ORMDL2Q53FV1 153 aa11.04□□□□□ -0.64
CLN3-203ENST00000357806 C15orf56Q8N910 161 aa11.04□□□□□ -0.64
CLN3-203ENST00000357806 AP5S1Q9NUS5 200 aa11.04□□□□□ -0.64
CLN3-203ENST00000357806 MRPS36P82909 103 aaKnown RBP11.03□□□□□ -0.64
CLN3-203ENST00000357806 CD164L2Q6UWJ8 174 aa11.03□□□□□ -0.64
CLN3-203ENST00000357806 MRPL18Q9H0U6 180 aaKnown RBP11.03□□□□□ -0.64
CLN3-203ENST00000357806 TGIF2-C20orf24A0A0A6YYL0 155 aa11.02□□□□□ -0.65
CLN3-203ENST00000357806 TRAV13-1A0A0B4J241 112 aa11.02□□□□□ -0.65
CLN3-203ENST00000357806 Q6ZSA8 131 aa11.02□□□□□ -0.65
CLN3-203ENST00000357806 CYSLTR1Q9Y271 337 aa11.02□□□□□ -0.65
CLN3-203ENST00000357806 PYGO1Q9Y3Y4 419 aa11.02□□□□□ -0.65
CLN3-203ENST00000357806 CNBPP62633 177 aaKnown RBP11.01□□□□□ -0.65
CLN3-203ENST00000357806 SLC7A5P1Q8MH63 180 aa11.01□□□□□ -0.65
CLN3-203ENST00000357806 FAM30AQ9NZY2 134 aa11.01□□□□□ -0.65
CLN3-203ENST00000357806 TRAV16A0A0A6YYK6 109 aaPredicted RBP11□□□□□ -0.65
CLN3-203ENST00000357806 FABP9Q0Z7S8 132 aa11□□□□□ -0.65
CLN3-203ENST00000357806 C2orf66Q6UXQ4 117 aa11□□□□□ -0.65
CLN3-203ENST00000357806 Q8N1X5 172 aa11□□□□□ -0.65
CLN3-203ENST00000357806 C9orf163Q8N9P6 203 aa11□□□□□ -0.65
CLN3-203ENST00000357806 ALKBH7Q9BT30 221 aaPredicted RBP11□□□□□ -0.65
CLN3-203ENST00000357806 GVQW2A0A096LPI5 108 aaPredicted RBP11□□□□□ -0.65
CLN3-203ENST00000357806 G0S2P27469 103 aa11□□□□□ -0.65
CLN3-203ENST00000357806 HIGD2BQ4VC39 106 aa11□□□□□ -0.65
CLN3-203ENST00000357806 FAM104AQ969W3 186 aa11□□□□□ -0.65
CLN3-203ENST00000357806 OPRPNQ99935 248 aaPredicted RBP11□□□□□ -0.65
CLN3-203ENST00000357806 IGHV1-58A0A0C4DH39 117 aa10.99□□□□□ -0.65
CLN3-203ENST00000357806 IFITM10A6NMD0 228 aa10.99□□□□□ -0.65
CLN3-203ENST00000357806 HAMPP81172 84 aa10.99□□□□□ -0.65
CLN3-203ENST00000357806 PRSS3P2Q8NHM4 247 aa10.99□□□□□ -0.65
CLN3-203ENST00000357806 TMEM141Q96I45 108 aa10.99□□□□□ -0.65
CLN3-203ENST00000357806 TRAPPC1Q9Y5R8 145 aa10.99□□□□□ -0.65
CLN3-203ENST00000357806 DNAH8Q96JB1 4490 aa10.98□□□□□ -0.65
CLN3-203ENST00000357806 IGLV4-3A0A075B6K6 122 aa10.98□□□□□ -0.65
CLN3-203ENST00000357806 COX7A2LO14548 114 aa10.97□□□□□ -0.65
CLN3-203ENST00000357806 MALP21145 153 aa10.97□□□□□ -0.65
CLN3-203ENST00000357806 Q6ZN92 141 aa10.97□□□□□ -0.65
CLN3-203ENST00000357806 NPSP0C0P6 89 aa10.96□□□□□ -0.65
CLN3-203ENST00000357806 TEX43Q6ZNM6 134 aa10.96□□□□□ -0.65
CLN3-203ENST00000357806 ATP6V1G1O75348 118 aa10.95□□□□□ -0.66
CLN3-203ENST00000357806 SLPIP03973 132 aa10.95□□□□□ -0.66
CLN3-203ENST00000357806 C2orf88Q9BSF0 95 aa10.95□□□□□ -0.66
CLN3-203ENST00000357806 KRTAP17-1Q9BYP8 105 aa10.95□□□□□ -0.66
CLN3-203ENST00000357806 IGHV3-64A0A075B6Q5 118 aa10.94□□□□□ -0.66
CLN3-203ENST00000357806 SMCO4Q9NRQ5 59 aa10.94□□□□□ -0.66
CLN3-203ENST00000357806 LINC01546A6NGU7 62 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 ZNF561-AS1K7EIQ3 104 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 APOMO95445 188 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 FA2HQ7L5A8 372 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 SCXQ7RTU7 201 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 C5orf38Q86SI9 138 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 TOMM6Q96B49 74 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 YPEL4Q96NS1 127 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 LINC01549A6NIU2 74 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms