RNA–Protein interactions for RNA: ENST00000333090.4

TSKU-201, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSKU, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-201ENST00000333090 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.12■□□□□ 0.33
TSKU-201ENST00000333090 TMEM101Q96IK0 257 aa17.12■□□□□ 0.33
TSKU-201ENST00000333090 TLN2Q9Y4G6 2542 aa17.11■□□□□ 0.33
TSKU-201ENST00000333090 TIMM17BO60830 172 aa17.11■□□□□ 0.33
TSKU-201ENST00000333090 ZNF415Q09FC8 603 aa17.11■□□□□ 0.33
TSKU-201ENST00000333090 ZNF625Q96I27 306 aaPredicted RBP17.11■□□□□ 0.33
TSKU-201ENST00000333090 TMEM89A2RUT3 159 aa17.11■□□□□ 0.33
TSKU-201ENST00000333090 USP24Q9UPU5 2620 aa17.11■□□□□ 0.33
TSKU-201ENST00000333090 DGAT2L7PQ6IED9 249 aa17.1■□□□□ 0.33
TSKU-201ENST00000333090 NDUFA1O15239 70 aa17.1■□□□□ 0.33
TSKU-201ENST00000333090 CITED2Q99967 270 aaPredicted RBP17.1■□□□□ 0.33
TSKU-201ENST00000333090 TEX15Q9BXT5 2789 aa17.09■□□□□ 0.33
TSKU-201ENST00000333090 CIRBPQ14011 172 aaKnown RBP17.09■□□□□ 0.33
TSKU-201ENST00000333090 DEFB136Q30KP8 78 aa17.08■□□□□ 0.33
TSKU-201ENST00000333090 Q9H8V8 135 aa17.08■□□□□ 0.33
TSKU-201ENST00000333090 FAM240AA0A1B0GVK7 77 aa17.08■□□□□ 0.32
TSKU-201ENST00000333090 COX6A2Q02221 97 aa17.08■□□□□ 0.32
TSKU-201ENST00000333090 SLURP1P55000 103 aa17.07■□□□□ 0.32
TSKU-201ENST00000333090 LINC01587Q99440 93 aa17.07■□□□□ 0.32
TSKU-201ENST00000333090 IGHV3-53P01767 116 aa17.06■□□□□ 0.32
TSKU-201ENST00000333090 MRPL23Q16540 153 aaKnown RBP17.06■□□□□ 0.32
TSKU-201ENST00000333090 DEFB121Q5J5C9 76 aa17.06■□□□□ 0.32
TSKU-201ENST00000333090 LINC00308Q8TCZ7 52 aa17.06■□□□□ 0.32
TSKU-201ENST00000333090 NBPF19A0A087WUL8 3843 aa17.06■□□□□ 0.32
TSKU-201ENST00000333090 TIRAPP58753 221 aa17.05■□□□□ 0.32
TSKU-201ENST00000333090 IGLV5-45A0A087WSX0 123 aa17.05■□□□□ 0.32
TSKU-201ENST00000333090 HIST2H2BDQ6DRA6 164 aa17.05■□□□□ 0.32
TSKU-201ENST00000333090 UBE2E2Q96LR5 201 aa17.05■□□□□ 0.32
TSKU-201ENST00000333090 IGHV3OR16-12A0A075B7B8 117 aa17.04■□□□□ 0.32
TSKU-201ENST00000333090 C18orf65Q6ZTR6 163 aa17.04■□□□□ 0.32
TSKU-201ENST00000333090 PIK3CD-AS1Q5SR53 167 aa17.04■□□□□ 0.32
TSKU-201ENST00000333090 MYO9AB2RTY4 2548 aa17.03■□□□□ 0.32
TSKU-201ENST00000333090 NAV2Q8IVL1 2488 aa17.03■□□□□ 0.32
TSKU-201ENST00000333090 DNAJC30Q96LL9 226 aa17.03■□□□□ 0.32
TSKU-201ENST00000333090 C11orf72Q8NBR9 251 aa17.03■□□□□ 0.32
TSKU-201ENST00000333090 A8MTW9 85 aa17.01■□□□□ 0.31
TSKU-201ENST00000333090 NDUFA7O95182 113 aa17.01■□□□□ 0.31
TSKU-201ENST00000333090 LINC00242Q5T6M2 205 aa17.01■□□□□ 0.31
TSKU-201ENST00000333090 CHCHD5Q9BSY4 110 aa17.01■□□□□ 0.31
TSKU-201ENST00000333090 HERVK_113P63121 156 aa17■□□□□ 0.31
TSKU-201ENST00000333090 EPG5Q9HCE0 2579 aa17■□□□□ 0.31
TSKU-201ENST00000333090 COX7A2LO14548 114 aa17■□□□□ 0.31
TSKU-201ENST00000333090 Q8N2B8 174 aa17■□□□□ 0.31
TSKU-201ENST00000333090 C2CD3Q4AC94 2353 aa17■□□□□ 0.31
TSKU-201ENST00000333090 IGLV5-39A0A0G2JS06 123 aa16.99■□□□□ 0.31
TSKU-201ENST00000333090 SONP18583 2426 aaKnown RBP16.99■□□□□ 0.31
TSKU-201ENST00000333090 TRAV13-1A0A0B4J241 112 aa16.99■□□□□ 0.31
TSKU-201ENST00000333090 SOSTDC1Q6X4U4 206 aa16.99■□□□□ 0.31
TSKU-201ENST00000333090 VPREB3Q9UKI3 123 aa16.98■□□□□ 0.31
TSKU-201ENST00000333090 LINC00694P0DN24 101 aa16.98■□□□□ 0.31
TSKU-201ENST00000333090 MEIG1Q5JSS6 88 aa16.98■□□□□ 0.31
TSKU-201ENST00000333090 ZNF702PQ9H963 129 aa16.98■□□□□ 0.31
TSKU-201ENST00000333090 NOTCH3Q9UM47 2321 aa16.98■□□□□ 0.31
TSKU-201ENST00000333090 NF1P21359 2839 aa16.97■□□□□ 0.31
TSKU-201ENST00000333090 TRBV7-7A0A0K0K1E9 115 aa16.97■□□□□ 0.31
TSKU-201ENST00000333090 RS1O15537 224 aa16.97■□□□□ 0.31
TSKU-201ENST00000333090 BEAN1Q3B7T3 259 aa16.97■□□□□ 0.31
TSKU-201ENST00000333090 PRIMA1Q86XR5 153 aa16.97■□□□□ 0.31
TSKU-201ENST00000333090 MAP6D1Q9H9H5 199 aa16.97■□□□□ 0.31
TSKU-201ENST00000333090 SMIM1B2RUZ4 78 aa16.96■□□□□ 0.31
TSKU-201ENST00000333090 INSP01308 110 aa16.95■□□□□ 0.3
TSKU-201ENST00000333090 LINC01356Q8N9X3 169 aa16.95■□□□□ 0.3
TSKU-201ENST00000333090 SHISA2Q6UWI4 295 aa16.94■□□□□ 0.3
TSKU-201ENST00000333090 SETD2Q9BYW2 2564 aaPredicted RBP16.94■□□□□ 0.3
TSKU-201ENST00000333090 XCL2Q9UBD3 114 aa16.94■□□□□ 0.3
TSKU-201ENST00000333090 KRTAP10-9P60411 292 aa16.93■□□□□ 0.3
TSKU-201ENST00000333090 SMIM20Q8N5G0 67 aa16.93■□□□□ 0.3
TSKU-201ENST00000333090 DAZ2Q13117 558 aaKnown RBP16.92■□□□□ 0.3
TSKU-201ENST00000333090 DAZ4Q86SG3 579 aaKnown RBP16.92■□□□□ 0.3
TSKU-201ENST00000333090 COPS9Q8WXC6 57 aa16.92■□□□□ 0.3
TSKU-201ENST00000333090 BBC3Q96PG8 261 aaPredicted RBP16.92■□□□□ 0.3
TSKU-201ENST00000333090 DAZ3Q9NR90 486 aaKnown RBP16.92■□□□□ 0.3
TSKU-201ENST00000333090 ACYP1P07311 99 aa16.92■□□□□ 0.3
TSKU-201ENST00000333090 KHDC1LQ5JSQ8 128 aa16.92■□□□□ 0.3
TSKU-201ENST00000333090 DYNLRB2Q8TF09 96 aa16.92■□□□□ 0.3
TSKU-201ENST00000333090 FAM236AA0A1B0GUQ0 79 aa16.91■□□□□ 0.3
TSKU-201ENST00000333090 FAM236BA0A1B0GV22 79 aa16.91■□□□□ 0.3
TSKU-201ENST00000333090 TRGV1A0A0A0MS02 117 aa16.91■□□□□ 0.3
TSKU-201ENST00000333090 NIPBLQ6KC79 2804 aaeCLIP16.91■□□□□ 0.3
TSKU-201ENST00000333090 C3orf56Q8N813 242 aa16.9■□□□□ 0.3
TSKU-201ENST00000333090 AKAP9Q99996 3911 aa16.9■□□□□ 0.3
TSKU-201ENST00000333090 SMCR5Q8TEV8 140 aa16.9■□□□□ 0.3
TSKU-201ENST00000333090 PEMTQ9UBM1 199 aa16.9■□□□□ 0.3
TSKU-201ENST00000333090 BAALC-AS2P0C853 105 aa16.9■□□□□ 0.3
TSKU-201ENST00000333090 UBR5O95071 2799 aaPredicted RBP16.89■□□□□ 0.29
TSKU-201ENST00000333090 CCDC168Q8NDH2 2452 aa16.89■□□□□ 0.29
TSKU-201ENST00000333090 NTM-AS1Q6ZSK4 140 aa16.88■□□□□ 0.29
TSKU-201ENST00000333090 FAM218AQ96MZ4 157 aa16.88■□□□□ 0.29
TSKU-201ENST00000333090 TRACP01848 142 aa16.87■□□□□ 0.29
TSKU-201ENST00000333090 RPL36AP83881 106 aaKnown RBP16.87■□□□□ 0.29
TSKU-201ENST00000333090 Q6YL49 198 aa16.87■□□□□ 0.29
TSKU-201ENST00000333090 RPL36ALQ969Q0 106 aaKnown RBP16.87■□□□□ 0.29
TSKU-201ENST00000333090 CHD6Q8TD26 2715 aa16.86■□□□□ 0.29
TSKU-201ENST00000333090 APCP25054 2843 aa16.86■□□□□ 0.29
TSKU-201ENST00000333090 F5H768 121 aa16.85■□□□□ 0.29
TSKU-201ENST00000333090 DSCR9P59020 149 aa16.85■□□□□ 0.29
TSKU-201ENST00000333090 WNK1Q9H4A3 2382 aa16.85■□□□□ 0.29
TSKU-201ENST00000333090 A0A096LNT2 108 aa16.85■□□□□ 0.29
TSKU-201ENST00000333090 FAM19A3Q7Z5A8 133 aa16.85■□□□□ 0.29
TSKU-201ENST00000333090 IMUPQ9GZP8 106 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 208.2 ms