RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PRM2P04554 102 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 SMIM13P0DJ93 91 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 CBLN1P23435 193 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 FUSP35637 526 aaKnown RBP eCLIP1.46□□□□□ -2.18
HMGB1-201ENST00000326004 SSR2P43308 183 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 XCL1P47992 114 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 FXYD7P58549 80 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 KRTAP12-3P60328 96 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 Q0VG73 95 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 NMSQ5H8A3 153 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.46□□□□□ -2.18
HMGB1-201ENST00000326004 IBA57Q5T440 356 aaKnown RBP1.46□□□□□ -2.18
HMGB1-201ENST00000326004 LYRM7Q5U5X0 104 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 BPIFA4PQ86YQ2 179 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 PMCHL2Q9BQD1 86 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 BCL2L10Q9HD36 194 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 CMC2Q9NRP2 79 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 RPRMQ9NS64 109 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 IL36BQ9NZH7 164 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 GNG13Q9P2W3 67 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 CKLFQ9UBR5 152 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 MINOS1-NBL1R4GNA1 71 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 MYO7BQ6PIF6 2116 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 CPAMD8Q8IZJ3 1885 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 TRRAPQ9Y4A5 3859 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 CNTRLQ7Z7A1 2325 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 DSPPQ9NZW4 1301 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 ANK3Q12955 4377 aaKnown RBP1.45□□□□□ -2.18
HMGB1-201ENST00000326004 TRAV9-1A0A075B6T8 112 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 TRAV4A0A0B4J268 109 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 A0A1W2PNM2 257 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 A0A1W2PQD3 144 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 RIIAD1A6NNX1 92 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 CEBPZOSA8MTT3 80 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 TMEM262E9PQX1 116 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 J3QLW9 94 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 K7ERJ3 54 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 SNCGO76070 127 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 TNFP01375 233 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 IGHV3-7P01780 117 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 GYPAP02724 150 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 RBP4P02753 201 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 SCTP09683 121 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 CD24P25063 80 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 HLA-DMBP28068 263 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 S100A3P33764 101 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 UBE2G1P62253 170 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 SNRPFP62306 86 aaKnown RBP1.45□□□□□ -2.18
HMGB1-201ENST00000326004 MIAQ16674 131 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 Q6ZS92 163 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 FAM19A2Q8N3H0 131 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 OR4X2Q8NGF9 303 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 OR8B3Q8NGG8 313 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 OR5C1Q8NGR4 320 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 ATP6V0E2Q8NHE4 81 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 OTOSQ8NHW6 89 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 STAG3L4Q8TBR4 150 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 PPDPFLQ8WWR9 84 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 TOMM6Q96B49 74 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 C2orf50Q96LR7 162 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 CCL19Q99731 98 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 SMIM7Q9BQ49 75 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 AICDAQ9GZX7 198 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 NAA60Q9H7X0 242 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 XAGE1AQ9HD64 81 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 MPC1Q9Y5U8 109 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 MALRD1Q5VYJ5 2156 aa1.45□□□□□ -2.18
HMGB1-201ENST00000326004 DENND4CQ5VZ89 1909 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 RP1P56715 2156 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 TRAV1-1A0A0B4J248 108 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 RBAKDNA6NC62 111 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 C11orf86A6NJI1 115 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 H3BMG7 143 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 J3QQQ9 107 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 DPM2O94777 84 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 NAPSAO96009 420 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 STATHP02808 62 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 COX8AP10176 69 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 BCL2P10415 239 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 FOXA3P55318 350 aaPredicted RBP1.44□□□□□ -2.18
HMGB1-201ENST00000326004 FXYD6P3P58550 94 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 KRTAP12-4P60329 112 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 RPL38P63173 70 aaKnown RBP1.44□□□□□ -2.18
HMGB1-201ENST00000326004 ZNF90Q03938 601 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 SSBP1Q04837 148 aaKnown RBP1.44□□□□□ -2.18
HMGB1-201ENST00000326004 SPRNQ5BIV9 151 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 Q6Q795 121 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 CYP2G1PQ6ZSU1 146 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 C10orf105Q8TEF2 133 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 TSKUQ8WUA8 353 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 H1FXQ92522 213 aaKnown RBP1.44□□□□□ -2.18
HMGB1-201ENST00000326004 LSM10Q969L4 123 aaKnown RBP1.44□□□□□ -2.18
HMGB1-201ENST00000326004 ADAT3Q96EY9 351 aaPredicted RBP1.44□□□□□ -2.18
HMGB1-201ENST00000326004 LINC00526Q96FQ7 95 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 DPH3Q96FX2 82 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 MRPL32Q9BYC8 188 aaKnown RBP1.44□□□□□ -2.18
HMGB1-201ENST00000326004 PBOV1Q9GZY1 135 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 SPANXCQ9NY87 97 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 RABAC1Q9UI14 185 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 MYH9P35579 1960 aaKnown RBP1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 142.4 ms