RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 C3orf56Q8N813 242 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 A0A1W2PRX2 142 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 C2orf48Q96LS8 159 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 IGHV3OR16-10A0A075B7F0 116 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 MSMBP08118 114 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 CMC4P56277 68 aaPredicted RBP3.45□□□□□ -1.86
PTPN13-201ENST00000316707 ORMDL1Q9P0S3 153 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 DSCR9P59020 149 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 PRR4Q16378 134 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 Q6ZSV7 163 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 C10orf105Q8TEF2 133 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 BRK1Q8WUW1 75 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 OBSCN-AS1Q96MR7 158 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 KLK5Q9Y337 293 aaPredicted RBP3.45□□□□□ -1.86
PTPN13-201ENST00000316707 AKAP6Q13023 2319 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 SOSTDC1Q6X4U4 206 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 COX7B2Q8TF08 81 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 CUL9Q8IWT3 2517 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.45□□□□□ -1.86
PTPN13-201ENST00000316707 TMEM243Q9BU79 118 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 UBL5Q9BZL1 73 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 SPG11Q96JI7 2443 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 RAI1Q7Z5J4 1906 aaPredicted RBP3.44□□□□□ -1.86
PTPN13-201ENST00000316707 PDE6GP18545 87 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 SMCR5Q8TEV8 140 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 CDC42SE2Q9NRR3 84 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 LINC00158P58513 81 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 MIR7-3HGQ8N6C7 128 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 IGHV4-61A0A0C4DH41 118 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 LECT2O14960 151 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 C11orf72Q8NBR9 251 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 C5orf42Q9H799 3197 aa3.44□□□□□ -1.86
PTPN13-201ENST00000316707 TRAV25A0A0B4J276 109 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 A0A1W2PPR1 153 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 H3BQ85 93 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 J3QLI3 93 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 MYO9AB2RTY4 2548 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 F5H768 121 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 PAX4O43316 350 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 MUC6Q6W4X9 2439 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 DNAH14Q0VDD8 3507 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 IGHV3-38A0A0C4DH36 116 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 K7EQD1 137 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 RBMY1FQ15415 496 aaKnown RBP3.43□□□□□ -1.86
PTPN13-201ENST00000316707 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.43□□□□□ -1.86
PTPN13-201ENST00000316707 C14orf132Q9NPU4 83 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 IGHV4-38-2P0DP08 117 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 NBL1P41271 181 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 DYNLRB2Q8TF09 96 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 ACACBO00763 2458 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 CCL18P55774 89 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 LINC00337Q8N6G1 96 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 MUC7Q8TAX7 377 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 Q9HAA7 133 aa3.43□□□□□ -1.86
PTPN13-201ENST00000316707 TRGV1A0A0A0MS02 117 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 ATP5J2P56134 94 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 LINC00846Q9NV44 126 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 PROK1P58294 105 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 FAM218AQ96MZ4 157 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 TMEM256-PLSCR3K7ERE1 68 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 TOMM7Q9P0U1 55 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 IGKV3D-7A0A0C4DH55 119 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 TRBV6-4A0A1B0GX49 114 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 GNLYP22749 145 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 LOC107984640A0A0U1RRK4 108 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 CCKP06307 115 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 CACNA1AO00555 2505 aa3.42□□□□□ -1.86
PTPN13-201ENST00000316707 LINC01561Q8N1V8 128 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 C6orf226Q5I0X4 101 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 C22orf24Q9Y442 160 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 F8WEM9 126 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 LY6G6DO95868 133 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 Q6ZSN1 163 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 SMIM11BQ8TCY0 68 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 USP9YO00507 2555 aaPredicted RBP3.41□□□□□ -1.86
PTPN13-201ENST00000316707 COX6A2Q02221 97 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 CDSNQ15517 529 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 IGF2RP11717 2491 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 DOPEY2Q9Y3R5 2298 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 UPK3BQ9BT76 320 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 MAP6D1Q9H9H5 199 aa3.41□□□□□ -1.86
PTPN13-201ENST00000316707 LAMA2P24043 3122 aaKnown RBP3.41□□□□□ -1.86
PTPN13-201ENST00000316707 A0A087WZ39 114 aa3.4□□□□□ -1.86
PTPN13-201ENST00000316707 DSCR8Q96T75 97 aa3.4□□□□□ -1.86
PTPN13-201ENST00000316707 IGHV3OR16-9A0A0B4J2B5 98 aa3.4□□□□□ -1.86
PTPN13-201ENST00000316707 PLA2G2AP14555 144 aa3.4□□□□□ -1.86
PTPN13-201ENST00000316707 FAM236DA0A1B0GTK5 79 aa3.4□□□□□ -1.87
PTPN13-201ENST00000316707 FAM236CP0DP71 79 aa3.4□□□□□ -1.87
PTPN13-201ENST00000316707 IGHV4-59P01825 116 aa3.4□□□□□ -1.87
PTPN13-201ENST00000316707 DEFB112Q30KQ8 113 aa3.4□□□□□ -1.87
PTPN13-201ENST00000316707 LYPD5Q6UWN5 251 aa3.4□□□□□ -1.87
PTPN13-201ENST00000316707 SPENQ96T58 3664 aaKnown RBP3.4□□□□□ -1.87
PTPN13-201ENST00000316707 UNC80Q8N2C7 3258 aa3.4□□□□□ -1.87
PTPN13-201ENST00000316707 IGKV2-28A0A075B6P5 120 aa3.4□□□□□ -1.87
PTPN13-201ENST00000316707 NDUFC1O43677 76 aa3.4□□□□□ -1.87
PTPN13-201ENST00000316707 IGKV2D-28P01615 120 aa3.4□□□□□ -1.87
PTPN13-201ENST00000316707 ATP5EP56381 51 aaPredicted RBP3.4□□□□□ -1.87
PTPN13-201ENST00000316707 NBEAQ8NFP9 2946 aa3.39□□□□□ -1.87
PTPN13-201ENST00000316707 DMDP11532 3685 aa3.39□□□□□ -1.87
PTPN13-201ENST00000316707 TRGV2A0A075B6R0 118 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms