RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ACACBO00763 2458 aa12.89□□□□□ -0.35
SYNPO-201ENST00000307662 GAS8-AS1O95177 125 aa12.89□□□□□ -0.35
SYNPO-201ENST00000307662 PROK1P58294 105 aa12.89□□□□□ -0.35
SYNPO-201ENST00000307662 PRO3102Q9H379 93 aa12.88□□□□□ -0.35
SYNPO-201ENST00000307662 SPG11Q96JI7 2443 aa12.88□□□□□ -0.35
SYNPO-201ENST00000307662 SNURFQ9Y675 71 aa12.88□□□□□ -0.35
SYNPO-201ENST00000307662 POLR2KP53803 58 aaKnown RBP12.88□□□□□ -0.35
SYNPO-201ENST00000307662 SEC61GP60059 68 aa12.88□□□□□ -0.35
SYNPO-201ENST00000307662 B9D2Q9BPU9 175 aa12.87□□□□□ -0.35
SYNPO-201ENST00000307662 TRBV6-8A0A0A6YYG3 113 aa12.87□□□□□ -0.35
SYNPO-201ENST00000307662 C22orf34Q6ZV56 151 aa12.87□□□□□ -0.35
SYNPO-201ENST00000307662 CNFNQ9BYD5 112 aa12.86□□□□□ -0.35
SYNPO-201ENST00000307662 PCNX3Q9H6A9 2034 aa12.86□□□□□ -0.35
SYNPO-201ENST00000307662 LINC00694P0DN24 101 aa12.86□□□□□ -0.35
SYNPO-201ENST00000307662 PRR9Q5T870 116 aa12.86□□□□□ -0.35
SYNPO-201ENST00000307662 CCKP06307 115 aa12.85□□□□□ -0.35
SYNPO-201ENST00000307662 DEFB114Q30KQ6 69 aa12.85□□□□□ -0.35
SYNPO-201ENST00000307662 Q6JHZ5 121 aa12.85□□□□□ -0.35
SYNPO-201ENST00000307662 UBE2D4Q9Y2X8 147 aa12.85□□□□□ -0.35
SYNPO-201ENST00000307662 TRBV6-4A0A1B0GX49 114 aa12.84□□□□□ -0.35
SYNPO-201ENST00000307662 C10orf142B7Z368 130 aa12.84□□□□□ -0.35
SYNPO-201ENST00000307662 FAM19A3Q7Z5A8 133 aa12.84□□□□□ -0.35
SYNPO-201ENST00000307662 MED12LQ86YW9 2145 aa12.84□□□□□ -0.35
SYNPO-201ENST00000307662 HIGD2AQ9BW72 106 aa12.84□□□□□ -0.35
SYNPO-201ENST00000307662 SMIM11BQ8TCY0 68 aa12.83□□□□□ -0.36
SYNPO-201ENST00000307662 LYRM9A8MSI8 78 aa12.83□□□□□ -0.36
SYNPO-201ENST00000307662 MUC22E2RYF6 1773 aaPredicted RBP12.82□□□□□ -0.36
SYNPO-201ENST00000307662 MRPS36P82909 103 aaKnown RBP12.82□□□□□ -0.36
SYNPO-201ENST00000307662 SMIM9A6NGZ8 99 aa12.82□□□□□ -0.36
SYNPO-201ENST00000307662 KLLNB2CW77 178 aa12.81□□□□□ -0.36
SYNPO-201ENST00000307662 UBE2D1P51668 147 aa12.81□□□□□ -0.36
SYNPO-201ENST00000307662 XAGE1AQ9HD64 81 aa12.81□□□□□ -0.36
SYNPO-201ENST00000307662 C9orf85Q96MD7 179 aa12.8□□□□□ -0.36
SYNPO-201ENST00000307662 NUP210LQ5VU65 1888 aa12.8□□□□□ -0.36
SYNPO-201ENST00000307662 Q6ZQY7 126 aa12.8□□□□□ -0.36
SYNPO-201ENST00000307662 DCANP1Q8TF63 244 aa12.8□□□□□ -0.36
SYNPO-201ENST00000307662 TNCP24821 2201 aa12.8□□□□□ -0.36
SYNPO-201ENST00000307662 IGIPA6NJ69 53 aa12.8□□□□□ -0.36
SYNPO-201ENST00000307662 M0QXV9 152 aa12.8□□□□□ -0.36
SYNPO-201ENST00000307662 CRYGDP07320 174 aa12.8□□□□□ -0.36
SYNPO-201ENST00000307662 DNAJC9-AS1A6NH13 148 aa12.79□□□□□ -0.36
SYNPO-201ENST00000307662 C1orf158Q8N1D5 194 aa12.79□□□□□ -0.36
SYNPO-201ENST00000307662 POM121L12Q8N7R1 296 aa12.79□□□□□ -0.36
SYNPO-201ENST00000307662 C3orf84H3BNL1 204 aa12.79□□□□□ -0.36
SYNPO-201ENST00000307662 WFDC10BQ8IUB3 73 aa12.79□□□□□ -0.36
SYNPO-201ENST00000307662 IGKV2-24A0A0C4DH68 120 aa12.79□□□□□ -0.36
SYNPO-201ENST00000307662 KIAA1549Q9HCM3 1950 aa12.78□□□□□ -0.36
SYNPO-201ENST00000307662 Q8N6K4 173 aa12.78□□□□□ -0.36
SYNPO-201ENST00000307662 Q6YL49 198 aa12.78□□□□□ -0.36
SYNPO-201ENST00000307662 FAM19A1Q7Z5A9 133 aa12.77□□□□□ -0.36
SYNPO-201ENST00000307662 C4orf48Q5BLP8 95 aa12.77□□□□□ -0.37
SYNPO-201ENST00000307662 SMIM26A0A096LP01 95 aa12.76□□□□□ -0.37
SYNPO-201ENST00000307662 UBE2D3P61077 147 aa12.76□□□□□ -0.37
SYNPO-201ENST00000307662 UBE2D2P62837 147 aa12.76□□□□□ -0.37
SYNPO-201ENST00000307662 LINC00526Q96FQ7 95 aa12.76□□□□□ -0.37
SYNPO-201ENST00000307662 CUL9Q8IWT3 2517 aa12.76□□□□□ -0.37
SYNPO-201ENST00000307662 C1orf195Q5TG92 126 aa12.76□□□□□ -0.37
SYNPO-201ENST00000307662 PRR14LQ5THK1 2151 aa12.75□□□□□ -0.37
SYNPO-201ENST00000307662 C19orf84I3L1E1 186 aa12.75□□□□□ -0.37
SYNPO-201ENST00000307662 CRIP2P52943 208 aaPredicted RBP12.75□□□□□ -0.37
SYNPO-201ENST00000307662 CD164L2Q6UWJ8 174 aa12.75□□□□□ -0.37
SYNPO-201ENST00000307662 PRORYQ9H606 182 aa12.75□□□□□ -0.37
SYNPO-201ENST00000307662 C14orf177Q52M58 125 aa12.74□□□□□ -0.37
SYNPO-201ENST00000307662 HRCT1Q6UXD1 115 aa12.74□□□□□ -0.37
SYNPO-201ENST00000307662 IGLV4-69A0A075B6H9 119 aa12.73□□□□□ -0.37
SYNPO-201ENST00000307662 A0A096LNI7 61 aa12.73□□□□□ -0.37
SYNPO-201ENST00000307662 CASC2Q6XLA1 102 aa12.73□□□□□ -0.37
SYNPO-201ENST00000307662 PLXNB1O43157 2135 aa12.73□□□□□ -0.37
SYNPO-201ENST00000307662 LINC00959A0A1B0GUT2 108 aa12.72□□□□□ -0.37
SYNPO-201ENST00000307662 SERP1Q9Y6X1 66 aa12.72□□□□□ -0.37
SYNPO-201ENST00000307662 OTOGLQ3ZCN5 2332 aa12.72□□□□□ -0.37
SYNPO-201ENST00000307662 MIFP14174 115 aa12.72□□□□□ -0.37
SYNPO-201ENST00000307662 C11orf45Q8TAV5 145 aa12.72□□□□□ -0.37
SYNPO-201ENST00000307662 TRAV7A0A075B6U4 112 aa12.71□□□□□ -0.37
SYNPO-201ENST00000307662 M0R378 163 aa12.71□□□□□ -0.37
SYNPO-201ENST00000307662 COX17Q14061 63 aa12.71□□□□□ -0.37
SYNPO-201ENST00000307662 C11orf71Q6IPW1 123 aa12.71□□□□□ -0.38
SYNPO-201ENST00000307662 CSPG4Q6UVK1 2322 aa12.71□□□□□ -0.38
SYNPO-201ENST00000307662 A6NED7 52 aa12.7□□□□□ -0.38
SYNPO-201ENST00000307662 C10orf99Q6UWK7 81 aa12.7□□□□□ -0.38
SYNPO-201ENST00000307662 SYCNQ0VAF6 134 aa12.7□□□□□ -0.38
SYNPO-201ENST00000307662 PSMG3-AS1Q96PY0 264 aa12.7□□□□□ -0.38
SYNPO-201ENST00000307662 PRR15LQ9BU68 103 aa12.7□□□□□ -0.38
SYNPO-201ENST00000307662 DHRS4-AS1Q9P1J3 65 aa12.7□□□□□ -0.38
SYNPO-201ENST00000307662 NOTCH2Q04721 2471 aa12.7□□□□□ -0.38
SYNPO-201ENST00000307662 FAM19A5Q7Z5A7 132 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-201ENST00000307662 TSPEAR-AS2P59090 65 aa12.69□□□□□ -0.38
SYNPO-201ENST00000307662 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-201ENST00000307662 A0A096LNJ9 63 aa12.69□□□□□ -0.38
SYNPO-201ENST00000307662 WFDC13Q8IUB5 93 aa12.69□□□□□ -0.38
SYNPO-201ENST00000307662 CDC42SE2Q9NRR3 84 aa12.69□□□□□ -0.38
SYNPO-201ENST00000307662 CACNA1AO00555 2505 aa12.69□□□□□ -0.38
SYNPO-201ENST00000307662 PRR4Q16378 134 aa12.68□□□□□ -0.38
SYNPO-201ENST00000307662 BBC3Q96PG8 261 aaPredicted RBP12.68□□□□□ -0.38
SYNPO-201ENST00000307662 HCFC1P51610 2035 aa12.68□□□□□ -0.38
SYNPO-201ENST00000307662 LOC100131303A0A0U1RQF7 123 aa12.67□□□□□ -0.38
SYNPO-201ENST00000307662 NTM-AS1Q6ZSK4 140 aa12.67□□□□□ -0.38
SYNPO-201ENST00000307662 IGKV2-28A0A075B6P5 120 aa12.67□□□□□ -0.38
SYNPO-201ENST00000307662 IGKV2D-28P01615 120 aa12.67□□□□□ -0.38
SYNPO-201ENST00000307662 Q8IZM0 81 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms