RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ARL17AQ8IVW1 177 aa14.36□□□□□ -0.11
VPS53-201ENST00000291074 A0A0J9YXY3 114 aa14.36□□□□□ -0.11
VPS53-201ENST00000291074 NOTCH2Q04721 2471 aa14.35□□□□□ -0.11
VPS53-201ENST00000291074 TINCRA0A1B0GVN0 87 aa14.35□□□□□ -0.11
VPS53-201ENST00000291074 K7EQD1 137 aa14.35□□□□□ -0.11
VPS53-201ENST00000291074 LINC00694P0DN24 101 aa14.35□□□□□ -0.11
VPS53-201ENST00000291074 SH2D6Q7Z4S9 175 aa14.35□□□□□ -0.11
VPS53-201ENST00000291074 A4D1N5 150 aa14.35□□□□□ -0.11
VPS53-201ENST00000291074 PLAC8L1A1L4L8 177 aa14.34□□□□□ -0.11
VPS53-201ENST00000291074 GAGE12HA6NDE8 117 aa14.34□□□□□ -0.11
VPS53-201ENST00000291074 EIF4EBP3O60516 100 aaPredicted RBP14.34□□□□□ -0.11
VPS53-201ENST00000291074 IGHV1-58A0A0C4DH39 117 aa14.34□□□□□ -0.11
VPS53-201ENST00000291074 KRTAP10-3P60369 221 aa14.34□□□□□ -0.11
VPS53-201ENST00000291074 TRAV4A0A0B4J268 109 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 GAGE12JA6NER3 117 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 F8W1H4 67 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 GAGE4Q13068 117 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 GAGE5Q13069 117 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 GAGE13Q4V321 117 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 MUSTN1Q8IVN3 82 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 PRO0461Q9UI25 63 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 DGAT2L7PQ6IED9 249 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 NTM-AS1Q6ZSK4 140 aa14.33□□□□□ -0.12
VPS53-201ENST00000291074 GAGE7O76087 117 aa14.32□□□□□ -0.12
VPS53-201ENST00000291074 GAGE12FP0CL80 117 aa14.32□□□□□ -0.12
VPS53-201ENST00000291074 GAGE12GP0CL81 117 aa14.32□□□□□ -0.12
VPS53-201ENST00000291074 GAGE12IP0CL82 117 aa14.32□□□□□ -0.12
VPS53-201ENST00000291074 RPL36AP83881 106 aaKnown RBP14.32□□□□□ -0.12
VPS53-201ENST00000291074 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.32□□□□□ -0.12
VPS53-201ENST00000291074 RPL36ALQ969Q0 106 aaKnown RBP14.32□□□□□ -0.12
VPS53-201ENST00000291074 VSIG2Q96IQ7 327 aa14.32□□□□□ -0.12
VPS53-201ENST00000291074 GEMIN7Q9H840 131 aaKnown RBP14.32□□□□□ -0.12
VPS53-201ENST00000291074 CDKN2A-AS1Q9UH64 79 aa14.32□□□□□ -0.12
VPS53-201ENST00000291074 FN1P02751 2386 aaKnown RBP14.31□□□□□ -0.12
VPS53-201ENST00000291074 NDUFA7O95182 113 aa14.31□□□□□ -0.12
VPS53-201ENST00000291074 INSL3P51460 131 aa14.31□□□□□ -0.12
VPS53-201ENST00000291074 CMC4P56277 68 aaPredicted RBP14.31□□□□□ -0.12
VPS53-201ENST00000291074 ETDBQ3ZM63 59 aa14.31□□□□□ -0.12
VPS53-201ENST00000291074 NDUFA12Q9UI09 145 aa14.31□□□□□ -0.12
VPS53-201ENST00000291074 PSMB2P49721 201 aa14.3□□□□□ -0.12
VPS53-201ENST00000291074 UBE2D3P61077 147 aa14.3□□□□□ -0.12
VPS53-201ENST00000291074 UBE2D2P62837 147 aa14.3□□□□□ -0.12
VPS53-201ENST00000291074 LITAFQ99732 161 aa14.3□□□□□ -0.12
VPS53-201ENST00000291074 DAZ2Q13117 558 aaKnown RBP14.3□□□□□ -0.12
VPS53-201ENST00000291074 CSNK1G2-AS1Q8NCQ2 148 aa14.3□□□□□ -0.12
VPS53-201ENST00000291074 PRO1854Q9UHT4 67 aa14.3□□□□□ -0.12
VPS53-201ENST00000291074 A0A1B0GV72 72 aa14.29□□□□□ -0.12
VPS53-201ENST00000291074 COX6A2Q02221 97 aa14.29□□□□□ -0.12
VPS53-201ENST00000291074 C16orf74Q96GX8 76 aa14.29□□□□□ -0.12
VPS53-201ENST00000291074 VWFP04275 2813 aa14.29□□□□□ -0.12
VPS53-201ENST00000291074 TRGV2A0A075B6R0 118 aa14.29□□□□□ -0.12
VPS53-201ENST00000291074 TRBV10-1A0A0K0K1A3 114 aa14.29□□□□□ -0.12
VPS53-201ENST00000291074 LOC100131303A0A0U1RQF7 123 aa14.29□□□□□ -0.12
VPS53-201ENST00000291074 ADAMTSL4-AS1Q5T5F5 129 aa14.28□□□□□ -0.12
VPS53-201ENST00000291074 FAM110AQ9BQ89 295 aa14.28□□□□□ -0.12
VPS53-201ENST00000291074 TRAV26-1A0A087WT03 109 aa14.27□□□□□ -0.12
VPS53-201ENST00000291074 H7C2G1 150 aa14.27□□□□□ -0.12
VPS53-201ENST00000291074 OTOGQ6ZRI0 2925 aa14.27□□□□□ -0.13
VPS53-201ENST00000291074 CKS1BP61024 79 aa14.27□□□□□ -0.13
VPS53-201ENST00000291074 DAZ4Q86SG3 579 aaKnown RBP14.27□□□□□ -0.13
VPS53-201ENST00000291074 DAZ3Q9NR90 486 aaKnown RBP14.27□□□□□ -0.13
VPS53-201ENST00000291074 LY6G6DO95868 133 aa14.26□□□□□ -0.13
VPS53-201ENST00000291074 TCL1BO95988 128 aa14.26□□□□□ -0.13
VPS53-201ENST00000291074 PRSS2P07478 247 aa14.26□□□□□ -0.13
VPS53-201ENST00000291074 SCGB1A1P11684 91 aa14.26□□□□□ -0.13
VPS53-201ENST00000291074 NPC2P61916 151 aa14.26□□□□□ -0.13
VPS53-201ENST00000291074 SMCPP49901 116 aaPredicted RBP14.25□□□□□ -0.13
VPS53-201ENST00000291074 LINC00242Q5T6M2 205 aa14.25□□□□□ -0.13
VPS53-201ENST00000291074 C1QTNF4Q9BXJ3 329 aa14.25□□□□□ -0.13
VPS53-201ENST00000291074 PF4P02776 101 aa14.25□□□□□ -0.13
VPS53-201ENST00000291074 SBSPONQ8IVN8 264 aa14.25□□□□□ -0.13
VPS53-201ENST00000291074 IGLV5-45A0A087WSX0 123 aa14.24□□□□□ -0.13
VPS53-201ENST00000291074 TRAV13-1A0A0B4J241 112 aa14.24□□□□□ -0.13
VPS53-201ENST00000291074 IGHV3-33P01772 117 aa14.24□□□□□ -0.13
VPS53-201ENST00000291074 TIRAPP58753 221 aa14.24□□□□□ -0.13
VPS53-201ENST00000291074 TMEM101Q96IK0 257 aa14.24□□□□□ -0.13
VPS53-201ENST00000291074 ZFAND6Q6FIF0 208 aa14.24□□□□□ -0.13
VPS53-201ENST00000291074 A0A0B4J2C4 111 aa14.22□□□□□ -0.13
VPS53-201ENST00000291074 SPATA3Q8NHX4 192 aa14.22□□□□□ -0.13
VPS53-201ENST00000291074 NBEAL2Q6ZNJ1 2754 aa14.22□□□□□ -0.13
VPS53-201ENST00000291074 OVOL2Q9BRP0 275 aa14.22□□□□□ -0.13
VPS53-201ENST00000291074 TRGV4A0A0C4DH28 118 aa14.21□□□□□ -0.13
VPS53-201ENST00000291074 SCGB1C2P0DMR2 95 aa14.21□□□□□ -0.13
VPS53-201ENST00000291074 LINC00482Q8N8I6 264 aa14.21□□□□□ -0.13
VPS53-201ENST00000291074 DAND5Q8N907 189 aa14.21□□□□□ -0.13
VPS53-201ENST00000291074 SPATA25Q9BR10 227 aa14.21□□□□□ -0.13
VPS53-201ENST00000291074 LYRM7Q5U5X0 104 aa14.21□□□□□ -0.13
VPS53-201ENST00000291074 NSD1Q96L73 2696 aaPredicted RBP14.21□□□□□ -0.13
VPS53-201ENST00000291074 CDC42SE2Q9NRR3 84 aa14.2□□□□□ -0.14
VPS53-201ENST00000291074 ERG28Q9UKR5 140 aa14.2□□□□□ -0.14
VPS53-201ENST00000291074 TENM1Q9UKZ4 2725 aa14.2□□□□□ -0.14
VPS53-201ENST00000291074 HERVK_113P63121 156 aa14.2□□□□□ -0.14
VPS53-201ENST00000291074 SPANXDQ9BXN6 97 aa14.2□□□□□ -0.14
VPS53-201ENST00000291074 SPANXCQ9NY87 97 aa14.2□□□□□ -0.14
VPS53-201ENST00000291074 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.19□□□□□ -0.14
VPS53-201ENST00000291074 MIAQ16674 131 aa14.19□□□□□ -0.14
VPS53-201ENST00000291074 CSDC2Q9Y534 153 aaKnown RBP14.19□□□□□ -0.14
VPS53-201ENST00000291074 TMEM243Q9BU79 118 aa14.19□□□□□ -0.14
VPS53-201ENST00000291074 Q1RN00 199 aa14.18□□□□□ -0.14
VPS53-201ENST00000291074 TRBV6-4A0A1B0GX49 114 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms