RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 CLPSL1A2RUU4 121 aa12.31□□□□□ -0.44
SH3RF1-201ENST00000284637 K7EQG2 157 aa12.31□□□□□ -0.44
SH3RF1-201ENST00000284637 SLPIP03973 132 aa12.31□□□□□ -0.44
SH3RF1-201ENST00000284637 UBE2D1P51668 147 aa12.31□□□□□ -0.44
SH3RF1-201ENST00000284637 ATP5EP56381 51 aaPredicted RBP12.31□□□□□ -0.44
SH3RF1-201ENST00000284637 NDUFC1O43677 76 aa12.3□□□□□ -0.44
SH3RF1-201ENST00000284637 LINC00308Q8TCZ7 52 aa12.3□□□□□ -0.44
SH3RF1-201ENST00000284637 H7C423 109 aa12.3□□□□□ -0.44
SH3RF1-201ENST00000284637 M0QY20 66 aa12.3□□□□□ -0.44
SH3RF1-201ENST00000284637 UBE2D3P61077 147 aa12.3□□□□□ -0.44
SH3RF1-201ENST00000284637 UBE2D2P62837 147 aa12.3□□□□□ -0.44
SH3RF1-201ENST00000284637 ENHOQ6UWT2 76 aa12.3□□□□□ -0.44
SH3RF1-201ENST00000284637 A8MZ25 164 aa12.29□□□□□ -0.44
SH3RF1-201ENST00000284637 NDUFB1O75438 58 aa12.29□□□□□ -0.44
SH3RF1-201ENST00000284637 GAS8-AS1O95177 125 aa12.29□□□□□ -0.44
SH3RF1-201ENST00000284637 PROK1P58294 105 aa12.29□□□□□ -0.44
SH3RF1-201ENST00000284637 LINC00269Q8N2A0 174 aa12.29□□□□□ -0.44
SH3RF1-201ENST00000284637 NRACQ8N912 160 aa12.29□□□□□ -0.44
SH3RF1-201ENST00000284637 COX7BP24311 80 aa12.28□□□□□ -0.44
SH3RF1-201ENST00000284637 ARHGAP32A7KAX9 2087 aa12.28□□□□□ -0.44
SH3RF1-201ENST00000284637 LY6LH3BQJ8 138 aa12.28□□□□□ -0.44
SH3RF1-201ENST00000284637 TNFRSF13BO14836 293 aaPredicted RBP12.28□□□□□ -0.44
SH3RF1-201ENST00000284637 CDIP1Q9H305 208 aa12.28□□□□□ -0.44
SH3RF1-201ENST00000284637 Q6ZS46 218 aa12.28□□□□□ -0.44
SH3RF1-201ENST00000284637 ODF3Q96PU9 254 aa12.28□□□□□ -0.44
SH3RF1-201ENST00000284637 F8W735 103 aaPredicted RBP12.27□□□□□ -0.44
SH3RF1-201ENST00000284637 CSDC2Q9Y534 153 aaKnown RBP12.27□□□□□ -0.44
SH3RF1-201ENST00000284637 SMIM26A0A096LP01 95 aa12.27□□□□□ -0.45
SH3RF1-201ENST00000284637 C11orf21Q9P2W6 132 aa12.27□□□□□ -0.45
SH3RF1-201ENST00000284637 IGF2RP11717 2491 aa12.25□□□□□ -0.45
SH3RF1-201ENST00000284637 TIMM17BO60830 172 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 SCXQ7RTU7 201 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 EBI3Q14213 229 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 UBE2AP49459 152 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 CHKB-CPT1BH3BT56 60 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 REG3AQ06141 175 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 C10orf99Q6UWK7 81 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 PPDPFQ9H3Y8 114 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 TRBV27A0A0K0K1C4 114 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 PRR9Q5T870 116 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 SPTSSBQ8NFR3 76 aa12.24□□□□□ -0.45
SH3RF1-201ENST00000284637 BPY2O14599 106 aa12.23□□□□□ -0.45
SH3RF1-201ENST00000284637 NCOR2Q9Y618 2525 aa12.23□□□□□ -0.45
SH3RF1-201ENST00000284637 C19orf84I3L1E1 186 aa12.23□□□□□ -0.45
SH3RF1-201ENST00000284637 RNASE3P12724 160 aaKnown RBP12.22□□□□□ -0.45
SH3RF1-201ENST00000284637 Q6JHZ5 121 aa12.22□□□□□ -0.45
SH3RF1-201ENST00000284637 CNFNQ9BYD5 112 aa12.22□□□□□ -0.45
SH3RF1-201ENST00000284637 DSCAMO60469 2012 aa12.22□□□□□ -0.45
SH3RF1-201ENST00000284637 DEFB114Q30KQ6 69 aa12.22□□□□□ -0.45
SH3RF1-201ENST00000284637 CHCHD10Q8WYQ3 142 aaPredicted RBP12.22□□□□□ -0.45
SH3RF1-201ENST00000284637 DNAJC9-AS1A6NH13 148 aa12.21□□□□□ -0.45
SH3RF1-201ENST00000284637 MRPS36P82909 103 aaKnown RBP12.21□□□□□ -0.45
SH3RF1-201ENST00000284637 A0A096LNJ9 63 aa12.21□□□□□ -0.46
SH3RF1-201ENST00000284637 CRIP2P52943 208 aaPredicted RBP12.21□□□□□ -0.46
SH3RF1-201ENST00000284637 NUP210LQ5VU65 1888 aa12.2□□□□□ -0.46
SH3RF1-201ENST00000284637 FAM222AQ5U5X8 452 aa12.2□□□□□ -0.46
SH3RF1-201ENST00000284637 TLN1Q9Y490 2541 aaKnown RBP12.2□□□□□ -0.46
SH3RF1-201ENST00000284637 SERP1Q9Y6X1 66 aa12.19□□□□□ -0.46
SH3RF1-201ENST00000284637 IBA57-AS1B1ANH7 110 aa12.19□□□□□ -0.46
SH3RF1-201ENST00000284637 H0Y9J4 135 aa12.19□□□□□ -0.46
SH3RF1-201ENST00000284637 TSHBP01222 138 aa12.19□□□□□ -0.46
SH3RF1-201ENST00000284637 LOC107984640A0A0U1RRK4 108 aa12.18□□□□□ -0.46
SH3RF1-201ENST00000284637 XAGE1AQ9HD64 81 aa12.18□□□□□ -0.46
SH3RF1-201ENST00000284637 TRBV6-5A0A0K0K1A5 114 aa12.18□□□□□ -0.46
SH3RF1-201ENST00000284637 PYGO1Q9Y3Y4 419 aa12.17□□□□□ -0.46
SH3RF1-201ENST00000284637 SNURFQ9Y675 71 aa12.17□□□□□ -0.46
SH3RF1-201ENST00000284637 IGKV2-24A0A0C4DH68 120 aa12.17□□□□□ -0.46
SH3RF1-201ENST00000284637 C6orf99Q4VX62 202 aa12.17□□□□□ -0.46
SH3RF1-201ENST00000284637 PRM2P04554 102 aa12.17□□□□□ -0.46
SH3RF1-201ENST00000284637 FSTL3O95633 263 aa12.17□□□□□ -0.46
SH3RF1-201ENST00000284637 HIGD2AQ9BW72 106 aa12.16□□□□□ -0.46
SH3RF1-201ENST00000284637 KLK5Q9Y337 293 aaPredicted RBP12.16□□□□□ -0.46
SH3RF1-201ENST00000284637 POLR2KP53803 58 aaKnown RBP12.16□□□□□ -0.46
SH3RF1-201ENST00000284637 COL4A4P53420 1690 aaPredicted RBP12.15□□□□□ -0.46
SH3RF1-201ENST00000284637 TRBV6-8A0A0A6YYG3 113 aa12.15□□□□□ -0.46
SH3RF1-201ENST00000284637 Q6YL49 198 aa12.15□□□□□ -0.46
SH3RF1-201ENST00000284637 A0A096LNI7 61 aa12.14□□□□□ -0.47
SH3RF1-201ENST00000284637 DCANP1Q8TF63 244 aa12.14□□□□□ -0.47
SH3RF1-201ENST00000284637 LTBP2Q14767 1821 aa12.13□□□□□ -0.47
SH3RF1-201ENST00000284637 CRYGDP07320 174 aa12.13□□□□□ -0.47
SH3RF1-201ENST00000284637 Q8N6K4 173 aa12.13□□□□□ -0.47
SH3RF1-201ENST00000284637 KLLNB2CW77 178 aa12.11□□□□□ -0.47
SH3RF1-201ENST00000284637 TRBV7-7A0A0K0K1E9 115 aa12.11□□□□□ -0.47
SH3RF1-201ENST00000284637 IGIPA6NJ69 53 aa12.11□□□□□ -0.47
SH3RF1-201ENST00000284637 PIEZO1Q92508 2521 aa12.11□□□□□ -0.47
SH3RF1-201ENST00000284637 SETD2Q9BYW2 2564 aaPredicted RBP12.11□□□□□ -0.47
SH3RF1-201ENST00000284637 POM121L12Q8N7R1 296 aa12.1□□□□□ -0.47
SH3RF1-201ENST00000284637 UBE2D4Q9Y2X8 147 aa12.1□□□□□ -0.47
SH3RF1-201ENST00000284637 C11orf71Q6IPW1 123 aa12.1□□□□□ -0.47
SH3RF1-201ENST00000284637 TLN2Q9Y4G6 2542 aa12.1□□□□□ -0.47
SH3RF1-201ENST00000284637 TRBV6-4A0A1B0GX49 114 aa12.1□□□□□ -0.47
SH3RF1-201ENST00000284637 TRAV7A0A075B6U4 112 aa12.1□□□□□ -0.47
SH3RF1-201ENST00000284637 IGHV4-31P0DP07 118 aa12.1□□□□□ -0.47
SH3RF1-201ENST00000284637 FAM19A3Q7Z5A8 133 aa12.09□□□□□ -0.47
SH3RF1-201ENST00000284637 ATG2AQ2TAZ0 1938 aa12.09□□□□□ -0.47
SH3RF1-201ENST00000284637 LINC00482Q8N8I6 264 aa12.09□□□□□ -0.47
SH3RF1-201ENST00000284637 CCKP06307 115 aa12.09□□□□□ -0.47
SH3RF1-201ENST00000284637 LOC100131303A0A0U1RQF7 123 aa12.08□□□□□ -0.48
SH3RF1-201ENST00000284637 LYRM9A8MSI8 78 aa12.08□□□□□ -0.48
SH3RF1-201ENST00000284637 PRO0461Q9UI25 63 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms