RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 TMEM223A0PJW6 202 aa8.05□□□□□ -1.12
CD44-201ENST00000263398 SETD2Q9BYW2 2564 aaPredicted RBP8.04□□□□□ -1.12
CD44-201ENST00000263398 JMJD1CQ15652 2540 aa8.04□□□□□ -1.12
CD44-201ENST00000263398 TNRC6BQ9UPQ9 1833 aaKnown RBP8.04□□□□□ -1.12
CD44-201ENST00000263398 TRBV6-5A0A0K0K1A5 114 aa8.04□□□□□ -1.12
CD44-201ENST00000263398 LAMA1P25391 3075 aa8.04□□□□□ -1.12
CD44-201ENST00000263398 TIRAPP58753 221 aa8.04□□□□□ -1.12
CD44-201ENST00000263398 LRRC75A-AS1Q8N1F1 130 aa8.04□□□□□ -1.12
CD44-201ENST00000263398 EYSQ5T1H1 3165 aa8.04□□□□□ -1.12
CD44-201ENST00000263398 ABCA12Q86UK0 2595 aa8.03□□□□□ -1.12
CD44-201ENST00000263398 IGHV4-28A0A0C4DH34 117 aa8.03□□□□□ -1.12
CD44-201ENST00000263398 VPS13AQ96RL7 3174 aa8.03□□□□□ -1.12
CD44-201ENST00000263398 NRACQ8N912 160 aa8.02□□□□□ -1.13
CD44-201ENST00000263398 PRORYQ9H606 182 aa8.02□□□□□ -1.13
CD44-201ENST00000263398 PYGO1Q9Y3Y4 419 aa8.02□□□□□ -1.13
CD44-201ENST00000263398 H7C423 109 aa8.02□□□□□ -1.13
CD44-201ENST00000263398 HIGD2BQ4VC39 106 aa8.02□□□□□ -1.13
CD44-201ENST00000263398 IGHV4-31P0DP07 118 aa8.02□□□□□ -1.13
CD44-201ENST00000263398 RNASE3P12724 160 aaKnown RBP8.02□□□□□ -1.13
CD44-201ENST00000263398 UFSP1Q6NVU6 142 aa8.02□□□□□ -1.13
CD44-201ENST00000263398 C2orf91Q6ZV80 131 aa8.02□□□□□ -1.13
CD44-201ENST00000263398 C14orf132Q9NPU4 83 aa8.02□□□□□ -1.13
CD44-201ENST00000263398 TRAV26-1A0A087WT03 109 aa8.01□□□□□ -1.13
CD44-201ENST00000263398 SMIM9A6NGZ8 99 aa8.01□□□□□ -1.13
CD44-201ENST00000263398 C11orf21Q9P2W6 132 aa8.01□□□□□ -1.13
CD44-201ENST00000263398 F8W735 103 aaPredicted RBP8.01□□□□□ -1.13
CD44-201ENST00000263398 CFAP126Q5VTH2 177 aa8.01□□□□□ -1.13
CD44-201ENST00000263398 LINC00308Q8TCZ7 52 aa8.01□□□□□ -1.13
CD44-201ENST00000263398 TEX49A0A1B0GTD5 131 aa8.01□□□□□ -1.13
CD44-201ENST00000263398 EML5Q05BV3 1969 aa8.01□□□□□ -1.13
CD44-201ENST00000263398 CNFNQ9BYD5 112 aa8□□□□□ -1.13
CD44-201ENST00000263398 TRBV30A0A0K0K1B3 111 aa8□□□□□ -1.13
CD44-201ENST00000263398 NDUFS5O43920 106 aa8□□□□□ -1.13
CD44-201ENST00000263398 NDUFB1O75438 58 aa8□□□□□ -1.13
CD44-201ENST00000263398 LINC00269Q8N2A0 174 aa8□□□□□ -1.13
CD44-201ENST00000263398 IBA57-AS1B1ANH7 110 aa8□□□□□ -1.13
CD44-201ENST00000263398 COX7BP24311 80 aa8□□□□□ -1.13
CD44-201ENST00000263398 MP68P56378 58 aa8□□□□□ -1.13
CD44-201ENST00000263398 FAM222AQ5U5X8 452 aa8□□□□□ -1.13
CD44-201ENST00000263398 SPEGQ15772 3267 aa8□□□□□ -1.13
CD44-201ENST00000263398 KLLNB2CW77 178 aa8□□□□□ -1.13
CD44-201ENST00000263398 POLR2KP53803 58 aaKnown RBP8□□□□□ -1.13
CD44-201ENST00000263398 REG3AQ06141 175 aa8□□□□□ -1.13
CD44-201ENST00000263398 LYRM9A8MSI8 78 aa7.99□□□□□ -1.13
CD44-201ENST00000263398 MT-ATP8P03928 68 aa7.99□□□□□ -1.13
CD44-201ENST00000263398 LINC00310P59036 64 aa7.99□□□□□ -1.13
CD44-201ENST00000263398 J3KT08 172 aa7.99□□□□□ -1.13
CD44-201ENST00000263398 TRIAP1O43715 76 aa7.99□□□□□ -1.13
CD44-201ENST00000263398 C10orf99Q6UWK7 81 aa7.99□□□□□ -1.13
CD44-201ENST00000263398 FN1P02751 2386 aaKnown RBP7.99□□□□□ -1.13
CD44-201ENST00000263398 TRBV6-4A0A1B0GX49 114 aa7.98□□□□□ -1.13
CD44-201ENST00000263398 PRR9Q5T870 116 aa7.98□□□□□ -1.13
CD44-201ENST00000263398 ATG2AQ2TAZ0 1938 aa7.98□□□□□ -1.13
CD44-201ENST00000263398 Q6ZSV7 163 aa7.98□□□□□ -1.13
CD44-201ENST00000263398 CHCHD10Q8WYQ3 142 aaPredicted RBP7.98□□□□□ -1.13
CD44-201ENST00000263398 TRBV6-8A0A0A6YYG3 113 aa7.97□□□□□ -1.13
CD44-201ENST00000263398 CELSR3Q9NYQ7 3312 aa7.97□□□□□ -1.13
CD44-201ENST00000263398 PRRC2AP48634 2157 aaKnown RBP7.97□□□□□ -1.13
CD44-201ENST00000263398 NDUFV3P56181 108 aaKnown RBP7.97□□□□□ -1.13
CD44-201ENST00000263398 PROK1P58294 105 aa7.97□□□□□ -1.13
CD44-201ENST00000263398 PSMG3-AS1Q96PY0 264 aa7.97□□□□□ -1.13
CD44-201ENST00000263398 RBX1P62877 108 aa7.97□□□□□ -1.13
CD44-201ENST00000263398 TIMM17BO60830 172 aa7.96□□□□□ -1.13
CD44-201ENST00000263398 TSHBP01222 138 aa7.96□□□□□ -1.13
CD44-201ENST00000263398 PIK3CD-AS1Q5SR53 167 aa7.96□□□□□ -1.13
CD44-201ENST00000263398 RNF183Q96D59 192 aa7.96□□□□□ -1.13
CD44-201ENST00000263398 CRYGDP07320 174 aa7.96□□□□□ -1.13
CD44-201ENST00000263398 WFDC11Q8NEX6 87 aa7.96□□□□□ -1.13
CD44-201ENST00000263398 GAS8-AS1O95177 125 aa7.96□□□□□ -1.14
CD44-201ENST00000263398 UBE2AP49459 152 aa7.96□□□□□ -1.14
CD44-201ENST00000263398 PKD1L2Q7Z442 2459 aa7.96□□□□□ -1.14
CD44-201ENST00000263398 C9orf85Q96MD7 179 aa7.95□□□□□ -1.14
CD44-201ENST00000263398 LRRK2Q5S007 2527 aa7.95□□□□□ -1.14
CD44-201ENST00000263398 IGLV1-40P01703 118 aa7.95□□□□□ -1.14
CD44-201ENST00000263398 Q8N976 141 aa7.95□□□□□ -1.14
CD44-201ENST00000263398 MRPS12O15235 138 aaKnown RBP7.95□□□□□ -1.14
CD44-201ENST00000263398 DCANP1Q8TF63 244 aa7.94□□□□□ -1.14
CD44-201ENST00000263398 URB1-AS1Q96HZ7 61 aa7.94□□□□□ -1.14
CD44-201ENST00000263398 POLQO75417 2590 aa7.93□□□□□ -1.14
CD44-201ENST00000263398 ZNF702PQ9H963 129 aa7.93□□□□□ -1.14
CD44-201ENST00000263398 TRAV23DV6A0A075B6W5 121 aa7.93□□□□□ -1.14
CD44-201ENST00000263398 UQCRQO14949 82 aa7.93□□□□□ -1.14
CD44-201ENST00000263398 BPY2O14599 106 aa7.93□□□□□ -1.14
CD44-201ENST00000263398 C11orf45Q8TAV5 145 aa7.93□□□□□ -1.14
CD44-201ENST00000263398 WFDC9Q8NEX5 89 aa7.93□□□□□ -1.14
CD44-201ENST00000263398 UPK3BQ9BT76 320 aa7.93□□□□□ -1.14
CD44-201ENST00000263398 COL6A3P12111 3177 aa7.92□□□□□ -1.14
CD44-201ENST00000263398 A8MZ25 164 aa7.92□□□□□ -1.14
CD44-201ENST00000263398 MRPS36P82909 103 aaKnown RBP7.92□□□□□ -1.14
CD44-201ENST00000263398 ATP5EP2Q5VTU8 51 aa7.92□□□□□ -1.14
CD44-201ENST00000263398 Q6ZS46 218 aa7.92□□□□□ -1.14
CD44-201ENST00000263398 MIFP14174 115 aa7.91□□□□□ -1.14
CD44-201ENST00000263398 SDIM1Q6ZPB5 146 aa7.91□□□□□ -1.14
CD44-201ENST00000263398 UBE2D4Q9Y2X8 147 aa7.91□□□□□ -1.14
CD44-201ENST00000263398 LST1O00453 97 aa7.91□□□□□ -1.14
CD44-201ENST00000263398 IGIPA6NJ69 53 aa7.91□□□□□ -1.14
CD44-201ENST00000263398 SLPIP03973 132 aa7.91□□□□□ -1.14
CD44-201ENST00000263398 C6orf99Q4VX62 202 aa7.91□□□□□ -1.14
CD44-201ENST00000263398 EPG5Q9HCE0 2579 aa7.91□□□□□ -1.14
CD44-201ENST00000263398 C5orf47Q569G3 176 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms