RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 TIMM21Q9BVV7 248 aa12.73□□□□□ -0.37
VIM-201ENST00000224237 IGLV4-69A0A075B6H9 119 aa12.72□□□□□ -0.37
VIM-201ENST00000224237 PAX4O43316 350 aa12.72□□□□□ -0.37
VIM-201ENST00000224237 SMAGPQ0VAQ4 97 aa12.72□□□□□ -0.37
VIM-201ENST00000224237 TMEM97Q5BJF2 176 aa12.72□□□□□ -0.37
VIM-201ENST00000224237 CEMP1Q6PRD7 247 aaPredicted RBP12.72□□□□□ -0.37
VIM-201ENST00000224237 TRBV25-1A0A075B6N4 114 aa12.72□□□□□ -0.37
VIM-201ENST00000224237 SBSPONQ8IVN8 264 aa12.72□□□□□ -0.37
VIM-201ENST00000224237 AMELXQ99217 191 aa12.72□□□□□ -0.37
VIM-201ENST00000224237 FAM104AQ969W3 186 aa12.71□□□□□ -0.37
VIM-201ENST00000224237 TMEM243Q9BU79 118 aa12.71□□□□□ -0.37
VIM-201ENST00000224237 NMUP48645 174 aa12.7□□□□□ -0.38
VIM-201ENST00000224237 MRPS36P82909 103 aaKnown RBP12.7□□□□□ -0.38
VIM-201ENST00000224237 TRBV6-8A0A0A6YYG3 113 aa12.7□□□□□ -0.38
VIM-201ENST00000224237 F5H768 121 aa12.7□□□□□ -0.38
VIM-201ENST00000224237 H7C423 109 aa12.7□□□□□ -0.38
VIM-201ENST00000224237 UBE2L6O14933 153 aa12.7□□□□□ -0.38
VIM-201ENST00000224237 DGAT2L7PQ6IED9 249 aa12.7□□□□□ -0.38
VIM-201ENST00000224237 ATP6V0E2Q8NHE4 81 aa12.7□□□□□ -0.38
VIM-201ENST00000224237 CSDC2Q9Y534 153 aaKnown RBP12.7□□□□□ -0.38
VIM-201ENST00000224237 C11orf86A6NJI1 115 aa12.69□□□□□ -0.38
VIM-201ENST00000224237 TCTAP57738 103 aa12.69□□□□□ -0.38
VIM-201ENST00000224237 Q6ZUT4 128 aa12.69□□□□□ -0.38
VIM-201ENST00000224237 ORAOV1Q8WV07 137 aa12.69□□□□□ -0.38
VIM-201ENST00000224237 VSIG2Q96IQ7 327 aa12.69□□□□□ -0.38
VIM-201ENST00000224237 DEFB121Q5J5C9 76 aa12.68□□□□□ -0.38
VIM-201ENST00000224237 NFE4Q86UQ8 179 aa12.68□□□□□ -0.38
VIM-201ENST00000224237 SPATA25Q9BR10 227 aa12.68□□□□□ -0.38
VIM-201ENST00000224237 A0A0J9YY99 117 aa12.68□□□□□ -0.38
VIM-201ENST00000224237 C12orf74Q32Q52 190 aa12.68□□□□□ -0.38
VIM-201ENST00000224237 PCP2Q8IVA1 136 aa12.68□□□□□ -0.38
VIM-201ENST00000224237 MRAPQ8TCY5 172 aa12.68□□□□□ -0.38
VIM-201ENST00000224237 COX11Q9Y6N1 276 aa12.68□□□□□ -0.38
VIM-201ENST00000224237 TRAV26-1A0A087WT03 109 aa12.67□□□□□ -0.38
VIM-201ENST00000224237 HTN3P15516 51 aa12.67□□□□□ -0.38
VIM-201ENST00000224237 SEC11AP67812 179 aa12.66□□□□□ -0.38
VIM-201ENST00000224237 RNASE13Q5GAN3 156 aaKnown RBP12.66□□□□□ -0.38
VIM-201ENST00000224237 CHAC1Q9BUX1 264 aa12.66□□□□□ -0.38
VIM-201ENST00000224237 IGKV2D-26A0A0A0MRZ7 120 aa12.65□□□□□ -0.38
VIM-201ENST00000224237 AMMECR1LQ6DCA0 310 aa12.65□□□□□ -0.38
VIM-201ENST00000224237 TM2D3Q9BRN9 247 aa12.65□□□□□ -0.38
VIM-201ENST00000224237 HIGD1BQ9P298 99 aa12.65□□□□□ -0.38
VIM-201ENST00000224237 A0A0J9YWU9 116 aa12.65□□□□□ -0.38
VIM-201ENST00000224237 OR5A1Q8NGJ0 315 aa12.65□□□□□ -0.38
VIM-201ENST00000224237 HERVK_113P61574 105 aa12.64□□□□□ -0.39
VIM-201ENST00000224237 HSD52Q0P140 79 aa12.64□□□□□ -0.39
VIM-201ENST00000224237 TMEM101Q96IK0 257 aa12.64□□□□□ -0.39
VIM-201ENST00000224237 E9PLD3 99 aa12.63□□□□□ -0.39
VIM-201ENST00000224237 TMEM170BQ5T4T1 132 aa12.63□□□□□ -0.39
VIM-201ENST00000224237 CHCHD5Q9BSY4 110 aa12.63□□□□□ -0.39
VIM-201ENST00000224237 DNHD1Q96M86 4753 aa12.63□□□□□ -0.39
VIM-201ENST00000224237 A0A0J9YXV3 536 aa12.63□□□□□ -0.39
VIM-201ENST00000224237 MRPL23Q16540 153 aaKnown RBP12.63□□□□□ -0.39
VIM-201ENST00000224237 CDC42SE2Q9NRR3 84 aa12.63□□□□□ -0.39
VIM-201ENST00000224237 A0A096LPF7 62 aa12.62□□□□□ -0.39
VIM-201ENST00000224237 SH2D6Q7Z4S9 175 aa12.62□□□□□ -0.39
VIM-201ENST00000224237 ICOSQ9Y6W8 199 aa12.62□□□□□ -0.39
VIM-201ENST00000224237 TAX1BP3O14907 124 aa12.61□□□□□ -0.39
VIM-201ENST00000224237 UBE2D1P51668 147 aa12.61□□□□□ -0.39
VIM-201ENST00000224237 GAGE6Q13070 117 aa12.61□□□□□ -0.39
VIM-201ENST00000224237 TINCRA0A1B0GVN0 87 aa12.61□□□□□ -0.39
VIM-201ENST00000224237 Q6ZTC4 211 aa12.61□□□□□ -0.39
VIM-201ENST00000224237 ZNF22P17026 224 aaPredicted RBP12.6□□□□□ -0.39
VIM-201ENST00000224237 C11orf45Q8TAV5 145 aa12.6□□□□□ -0.39
VIM-201ENST00000224237 TRAV8-6A0A0B4J262 113 aa12.59□□□□□ -0.39
VIM-201ENST00000224237 A6NDN8 102 aa12.59□□□□□ -0.39
VIM-201ENST00000224237 H3BNG1 76 aa12.59□□□□□ -0.39
VIM-201ENST00000224237 HUWE1Q7Z6Z7 4374 aaKnown RBP12.58□□□□□ -0.39
VIM-201ENST00000224237 TTTY13Q9BZ97 58 aa12.58□□□□□ -0.4
VIM-201ENST00000224237 TMEM223A0PJW6 202 aa12.57□□□□□ -0.4
VIM-201ENST00000224237 Q6ZVH6 145 aa12.57□□□□□ -0.4
VIM-201ENST00000224237 FAM19A3Q7Z5A8 133 aa12.57□□□□□ -0.4
VIM-201ENST00000224237 GEMIN7Q9H840 131 aaKnown RBP12.57□□□□□ -0.4
VIM-201ENST00000224237 TIRAPP58753 221 aa12.57□□□□□ -0.4
VIM-201ENST00000224237 UBE2V1Q13404 147 aa12.57□□□□□ -0.4
VIM-201ENST00000224237 NANOS2P60321 138 aaKnown RBP12.56□□□□□ -0.4
VIM-201ENST00000224237 IGLV4-60A0A075B6I1 120 aa12.55□□□□□ -0.4
VIM-201ENST00000224237 A0A1B0GUV1 79 aa12.55□□□□□ -0.4
VIM-201ENST00000224237 HERVK_113P63121 156 aa12.55□□□□□ -0.4
VIM-201ENST00000224237 MAPKAPK5-AS1Q8N8E1 139 aa12.55□□□□□ -0.4
VIM-201ENST00000224237 TMEM262E9PQX1 116 aa12.55□□□□□ -0.4
VIM-201ENST00000224237 H3BRM9 83 aa12.55□□□□□ -0.4
VIM-201ENST00000224237 IGLV5-45A0A087WSX0 123 aa12.54□□□□□ -0.4
VIM-201ENST00000224237 TRAV13-1A0A0B4J241 112 aa12.54□□□□□ -0.4
VIM-201ENST00000224237 MYMXA0A1B0GTQ4 84 aa12.54□□□□□ -0.4
VIM-201ENST00000224237 PTTG1IPP53801 180 aa12.54□□□□□ -0.4
VIM-201ENST00000224237 TAL2Q16559 108 aa12.54□□□□□ -0.4
VIM-201ENST00000224237 LINC00242Q5T6M2 205 aa12.54□□□□□ -0.4
VIM-201ENST00000224237 LELP1Q5T871 98 aa12.53□□□□□ -0.4
VIM-201ENST00000224237 DEFB131BA0A096LNP1 70 aa12.53□□□□□ -0.4
VIM-201ENST00000224237 VAMP3Q15836 100 aa12.53□□□□□ -0.4
VIM-201ENST00000224237 TM2D2Q9BX73 214 aa12.53□□□□□ -0.4
VIM-201ENST00000224237 LEPROTO15243 131 aa12.52□□□□□ -0.41
VIM-201ENST00000224237 RBX1P62877 108 aa12.52□□□□□ -0.41
VIM-201ENST00000224237 ZNF815PA8K554 130 aa12.51□□□□□ -0.41
VIM-201ENST00000224237 J3QQQ9 107 aa12.51□□□□□ -0.41
VIM-201ENST00000224237 CDKN2A-AS1Q9UH64 79 aa12.51□□□□□ -0.41
VIM-201ENST00000224237 COL7A1Q02388 2944 aa12.51□□□□□ -0.41
VIM-201ENST00000224237 CCL25O15444 150 aa12.51□□□□□ -0.41
VIM-201ENST00000224237 LGALS3P17931 250 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms