RNA–Protein interactions for RNA: YPR036W

VMA13, Transcript of Subunit H of the V1 peripheral membrane domain of V-ATPase, yeast

Gene VMA13, Length 1,437 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA13	YPR036W	VPS53	P47061	822 aa		5.68	□□□□□ -1.5
VMA13	YPR036W	CTR1	P49573	406 aa		5.68	□□□□□ -1.5
VMA13	YPR036W	NBP1	P52919	319 aa	Predicted RBP	5.68	□□□□□ -1.5
VMA13	YPR036W	TAD1	P53065	400 aa		5.68	□□□□□ -1.5
VMA13	YPR036W	PCL10	P53124	433 aa		5.68	□□□□□ -1.5
VMA13	YPR036W	RRN5	Q02983	363 aa		5.68	□□□□□ -1.5
VMA13	YPR036W	ADI1	Q03677	179 aa		5.68	□□□□□ -1.5
VMA13	YPR036W	TY1A-MR1	Q04215	440 aa		5.68	□□□□□ -1.5
VMA13	YPR036W	RRB1	Q04225	511 aa	Known RBP	5.68	□□□□□ -1.5
VMA13	YPR036W	HDA3	Q06623	655 aa		5.68	□□□□□ -1.5
VMA13	YPR036W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
VMA13	YPR036W	RMP1	Q12530	201 aa		5.68	□□□□□ -1.5
VMA13	YPR036W	RSC6	P25632	483 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	MCM5	P29496	775 aa	Known RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	HEM12	P32347	362 aa	Predicted RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	KTR2	P33550	425 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	MDJ1	P35191	511 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	MTH1	P35198	433 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	PGM2	P37012	569 aa	Known RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	SEA4	P38164	1038 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	MCX1	P38323	520 aa	Predicted RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	YLF2	P38746	405 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	OSH7	P38755	437 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	PNT1	P38969	423 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	OAF1	P39720	1047 aa	Predicted RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	EMP65	P40085	556 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	KHA1	P40309	873 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	NDC80	P40460	691 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	SBE2	P42223	864 aa	Known RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	POL31	P46957	487 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	YJR096W	P47137	282 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	LYS5	P50113	272 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	NUP84	P52891	726 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	RRT6	P53117	311 aa	Predicted RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	MET13	P53128	600 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	ERV25	P54837	211 aa	Known RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	5.67	□□□□□ -1.5	not detected
VMA13	YPR036W	YML037C	Q03703	340 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	CIA1	Q05583	330 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	UTP21	Q06078	939 aa	Predicted RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	ISR1	Q06098	443 aa	Known RBP	5.67	□□□□□ -1.5
VMA13	YPR036W	VAC14	Q06708	880 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	YDR034W-B	Q6Q5X2	51 aa		5.67	□□□□□ -1.5
VMA13	YPR036W	SAM1	P10659	382 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	GFA1	P14742	717 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	MNE1	P24720	663 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	5.66	□□□□□ -1.5	not detected
VMA13	YPR036W	NAM7	P30771	971 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	SEC21	P32074	935 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	SSE1	P32589	693 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	TGL1	P34163	548 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	YEL1	P34225	687 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	BIT2	P38346	545 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	RIX1	P38883	763 aa	Predicted RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	SMF1	P38925	575 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	RIC1	P40395	1056 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	ZIM17	P42844	174 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	CCT7	P42943	550 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	CCM1	P48237	864 aa	Predicted RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	FOL2	P51601	243 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	ZIP2	P53061	704 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	LIF1	P53150	421 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	HOP2	P53187	214 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	5.66	□□□□□ -1.5	not detected
VMA13	YPR036W	PEX25	Q02969	394 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	NGL3	Q03210	505 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	HAS1	Q03532	505 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	UTP5	Q04177	643 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	RBA50	Q04418	439 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	DPB4	Q04603	196 aa	Known RBP	5.66	□□□□□ -1.5
VMA13	YPR036W	SOV1	Q04748	898 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	PHO92	Q06390	306 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	MRL1	Q06815	381 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	NFI1	Q12216	726 aa		5.66	□□□□□ -1.5
VMA13	YPR036W	CLN3	P13365	580 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	PRP28	P23394	588 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	PRP22	P24384	1145 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	APL1	P27351	700 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	PAP1	P29468	568 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	EFB1	P32471	206 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	MRE11	P32829	692 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	XRS2	P33301	854 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	PGM1	P33401	570 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	RDH54	P38086	958 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	SET5	P38890	526 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	CIN4	P39110	191 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	GDI1	P39958	451 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	BUD16	P39988	312 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	LSM5	P40089	93 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	YJL068C	P40363	299 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	SEC28	P40509	296 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	GZF3	P42944	551 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	AIM14	P53109	570 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	YGL039W	P53183	348 aa	Known RBP	5.65	□□□□□ -1.5
VMA13	YPR036W	SFB2	P53953	876 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	ARK1	P53974	638 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	TIM10	P87108	93 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	SNZ1	Q03148	297 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	MCP2	Q06567	569 aa		5.65	□□□□□ -1.5
VMA13	YPR036W	SIL1	Q08199	421 aa		5.65	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 73.5 ms