RNA–Protein interactions for RNA: YDR078C

SHU2, Transcript of Component of Shu complex (aka PCSS complex), yeast

Gene SHU2, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHU2	YDR078C	RRT6	P53117	311 aa	Predicted RBP	4.57	□□□□□ -1.68
SHU2	YDR078C	YAP1802	P53309	568 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	RNT1	Q02555	471 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	VID22	Q05934	901 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	CSR1	Q06705	408 aa	Known RBP	4.57	□□□□□ -1.68
SHU2	YDR078C	AIM39	Q08223	395 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	MLH3	Q12083	715 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	ALG7	P07286	448 aa		4.56	□□□□□ -1.68
SHU2	YDR078C	HSC82	P15108	705 aa	Known RBP	4.56	□□□□□ -1.68
SHU2	YDR078C	THR1	P17423	357 aa	Known RBP	4.56	□□□□□ -1.68
SHU2	YDR078C	BET2	P20133	325 aa		4.56	□□□□□ -1.68
SHU2	YDR078C	RPS7A	P26786	190 aa	Known RBP	4.56	□□□□□ -1.68
SHU2	YDR078C	ARP2	P32381	391 aa	Known RBP	4.56	□□□□□ -1.68
SHU2	YDR078C	DSS4	P32601	143 aa		4.56	□□□□□ -1.68
SHU2	YDR078C	DHR2	P36009	735 aa	Predicted RBP	4.56	□□□□□ -1.68
SHU2	YDR078C	SAP4	P53036	818 aa		4.56	□□□□□ -1.68
SHU2	YDR078C	YSH1	Q06224	779 aa	Predicted RBP	4.56	□□□□□ -1.68
SHU2	YDR078C	AIM6	Q07716	390 aa		4.56	□□□□□ -1.68
SHU2	YDR078C	YLR040C	Q07988	224 aa		4.56	□□□□□ -1.68
SHU2	YDR078C	LEU2	P04173	364 aa	Predicted RBP	4.55	□□□□□ -1.68
SHU2	YDR078C	CTT1	P06115	562 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	PPR1	P07272	904 aa	Predicted RBP	4.55	□□□□□ -1.68
SHU2	YDR078C	ABF1	P14164	731 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	SET3	P36124	751 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	MRPL7	P36519	292 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	AXL2	P38928	823 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	BST1	P43571	1029 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	COS12	P53053	380 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	ATG21	Q02887	496 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	TRM8	Q12009	286 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	YDR056C	Q12025	205 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	ICL2	Q12031	575 aa		4.55	□□□□□ -1.68
SHU2	YDR078C	GUK1	P15454	187 aa	Known RBP	4.54	□□□□□ -1.68
SHU2	YDR078C	VPS34	P22543	875 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	FUB1	P25659	250 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	PRE2	P30656	287 aa	Known RBP	4.54	□□□□□ -1.68
SHU2	YDR078C	RAD16	P31244	790 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	IMP2'	P32351	346 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	UME6	P39001	836 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	TMA108	P40462	946 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	RIA1	P53893	1110 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	EFR3	Q03653	782 aa	Known RBP	4.54	□□□□□ -1.68
SHU2	YDR078C	HOF1	Q05080	669 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	YDL086W	Q07505	273 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	USV1	Q12132	391 aa		4.54	□□□□□ -1.68
SHU2	YDR078C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
SHU2	YDR078C	CAP1	P28495	268 aa	Known RBP	4.53	□□□□□ -1.68
SHU2	YDR078C	ELF1	P36053	145 aa		4.53	□□□□□ -1.68
SHU2	YDR078C	SUL1	P38359	859 aa		4.53	□□□□□ -1.68
SHU2	YDR078C	YER010C	P40011	234 aa		4.53	□□□□□ -1.68
SHU2	YDR078C	IDS2	P46958	469 aa		4.53	□□□□□ -1.68
SHU2	YDR078C	YOL073C	Q08232	322 aa		4.53	□□□□□ -1.68
SHU2	YDR078C	PET122	P10355	254 aa		4.52	□□□□□ -1.69
SHU2	YDR078C	CBF2	P32504	956 aa		4.52	□□□□□ -1.69
SHU2	YDR078C	TEF4	P36008	412 aa	Known RBP	4.52	□□□□□ -1.69
SHU2	YDR078C	PPS1	P38148	807 aa		4.52	□□□□□ -1.69
SHU2	YDR078C	YHR097C	P38809	366 aa	Known RBP	4.52	□□□□□ -1.69
SHU2	YDR078C	NOC2	P39744	710 aa	Known RBP	4.52	□□□□□ -1.69
SHU2	YDR078C	ARB1	P40024	610 aa	Known RBP	4.52	□□□□□ -1.69
SHU2	YDR078C	PSP1	P50896	841 aa	Known RBP	4.52	□□□□□ -1.69
SHU2	YDR078C	YGR151C	P53287	111 aa		4.52	□□□□□ -1.69
SHU2	YDR078C	SNF12	P53628	566 aa		4.52	□□□□□ -1.69
SHU2	YDR078C	ESF2	P53743	316 aa	Known RBP	4.52	□□□□□ -1.69
SHU2	YDR078C	KIN4	Q01919	800 aa		4.52	□□□□□ -1.69
SHU2	YDR078C	RKI1	Q12189	258 aa		4.52	□□□□□ -1.69
SHU2	YDR078C	SUL2	Q12325	893 aa		4.52	□□□□□ -1.69
SHU2	YDR078C	TPK1	P06244	397 aa		4.51	□□□□□ -1.69
SHU2	YDR078C	YCR061W	P25639	631 aa		4.51	□□□□□ -1.69
SHU2	YDR078C	MUD2	P36084	527 aa	Known RBP	4.51	□□□□□ -1.69
SHU2	YDR078C	DPH1	P40487	425 aa	Known RBP	4.51	□□□□□ -1.69
SHU2	YDR078C	ATG4	P53867	494 aa		4.51	□□□□□ -1.69
SHU2	YDR078C	SSL2	Q00578	843 aa		4.51	□□□□□ -1.69
SHU2	YDR078C	YPL108W	Q02872	168 aa	Predicted RBP	4.51	□□□□□ -1.69
SHU2	YDR078C	USA1	Q03714	838 aa		4.51	□□□□□ -1.69
SHU2	YDR078C	UFO1	Q04511	668 aa		4.51	□□□□□ -1.69
SHU2	YDR078C	VAM6	Q07468	1049 aa		4.51	□□□□□ -1.69
SHU2	YDR078C	PCD1	Q12524	340 aa		4.51	□□□□□ -1.69
SHU2	YDR078C	RTP1	Q12751	981 aa		4.51	□□□□□ -1.69
SHU2	YDR078C	FUM1	P08417	488 aa	Known RBP	4.5	□□□□□ -1.69
SHU2	YDR078C	PAH1	P32567	862 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	CNS1	P33313	385 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	APL3	P38065	1025 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	SDH8	P38345	138 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	NMA2	P53204	395 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	DIP5	P53388	608 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	CSL4	P53859	292 aa	Predicted RBP	4.5	□□□□□ -1.69
SHU2	YDR078C	CBK1	P53894	756 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	MDM1	Q01846	1127 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	MFM1	Q02783	413 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	SNO4	Q04902	237 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	URN1	Q06525	465 aa	Known RBP	4.5	□□□□□ -1.69
SHU2	YDR078C	HSP33	Q08914	237 aa	Known RBP	4.5	□□□□□ -1.69
SHU2	YDR078C	BMS1	Q08965	1183 aa	Known RBP	4.5	□□□□□ -1.69
SHU2	YDR078C	HSP32	Q08992	237 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	COX17	Q12287	69 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	MED1	Q12321	566 aa		4.5	□□□□□ -1.69
SHU2	YDR078C	SAN1	P22470	610 aa		4.49	□□□□□ -1.69
SHU2	YDR078C	SWC3	P31376	625 aa		4.49	□□□□□ -1.69
SHU2	YDR078C	KSP1	P38691	1029 aa	Known RBP	4.49	□□□□□ -1.69
SHU2	YDR078C	NOP16	P40007	231 aa	Known RBP	4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms