RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W CDC20P26309 610 aa14.5□□□□□ -0.09
DEP1YAL013W DAL1P32375 460 aa14.5□□□□□ -0.09
DEP1YAL013W ECM13P38195 257 aa14.5□□□□□ -0.09
DEP1YAL013W EDC3P39998 551 aaKnown RBP14.5□□□□□ -0.09
DEP1YAL013W RTA1P53047 317 aa14.5□□□□□ -0.09
DEP1YAL013W YGR127WP53275 312 aa14.5□□□□□ -0.09
DEP1YAL013W GCN5Q03330 439 aa14.5□□□□□ -0.09
DEP1YAL013W NRT1Q08485 598 aa14.5□□□□□ -0.09
DEP1YAL013W CBC2Q08920 208 aaKnown RBP RIP-Chip data14.5□□□□□ -0.09not detected
DEP1YAL013W MNL2Q12205 849 aa14.5□□□□□ -0.09
DEP1YAL013W EFG1Q3E705 233 aaKnown RBP14.5□□□□□ -0.09
DEP1YAL013W IDI1P15496 288 aa14.49□□□□□ -0.09
DEP1YAL013W RAD16P31244 790 aa14.49□□□□□ -0.09
DEP1YAL013W SAF1P38352 637 aa14.49□□□□□ -0.09
DEP1YAL013W IML2P47031 731 aa14.49□□□□□ -0.09
DEP1YAL013W NDJ1Q12366 352 aa14.49□□□□□ -0.09
DEP1YAL013W ILS1P09436 1072 aaKnown RBP14.48□□□□□ -0.09
DEP1YAL013W KAR4P25583 335 aa14.48□□□□□ -0.09
DEP1YAL013W URK1P27515 501 aa14.48□□□□□ -0.09
DEP1YAL013W URA7P28274 579 aaKnown RBP14.48□□□□□ -0.09
DEP1YAL013W PMI40P29952 429 aaKnown RBP14.48□□□□□ -0.09
DEP1YAL013W ISF1P32488 338 aa14.48□□□□□ -0.09
DEP1YAL013W YAT2P40017 923 aa14.48□□□□□ -0.09
DEP1YAL013W RTT101P47050 842 aa14.48□□□□□ -0.09
DEP1YAL013W YNL034WP53963 612 aa14.48□□□□□ -0.09
DEP1YAL013W YNL018CP53976 612 aa14.48□□□□□ -0.09
DEP1YAL013W PIR3Q03180 325 aa14.48□□□□□ -0.09
DEP1YAL013W PIG1Q06216 648 aa14.48□□□□□ -0.09
DEP1YAL013W SVS1Q12254 260 aa14.48□□□□□ -0.09
DEP1YAL013W RPB2P08518 1224 aaKnown RBP14.47□□□□□ -0.09
DEP1YAL013W YCR051WP25631 222 aa14.47□□□□□ -0.09
DEP1YAL013W SET3P36124 751 aa14.47□□□□□ -0.09
DEP1YAL013W FUI1P38196 639 aa14.47□□□□□ -0.09
DEP1YAL013W OTU2P38747 307 aaKnown RBP14.47□□□□□ -0.09
DEP1YAL013W BTT1P40314 149 aaPredicted RBP14.47□□□□□ -0.09
DEP1YAL013W ATM1P40416 690 aa14.47□□□□□ -0.09
DEP1YAL013W ZIP2P53061 704 aa14.47□□□□□ -0.09
DEP1YAL013W PCL10P53124 433 aa14.47□□□□□ -0.09
DEP1YAL013W INP2Q03824 705 aa14.47□□□□□ -0.09
DEP1YAL013W SPO71Q03868 1245 aa14.47□□□□□ -0.09
DEP1YAL013W TDA5Q06417 326 aaKnown RBP14.47□□□□□ -0.09
DEP1YAL013W SPE1P08432 466 aa14.46□□□□□ -0.09
DEP1YAL013W MRPL25P23369 157 aa14.46□□□□□ -0.09
DEP1YAL013W YEL028WP39989 153 aa14.46□□□□□ -0.09
DEP1YAL013W KTR7P40504 517 aa14.46□□□□□ -0.09
DEP1YAL013W YJL132WP47014 750 aa14.46□□□□□ -0.09
DEP1YAL013W SLT2Q00772 484 aa14.46□□□□□ -0.09
DEP1YAL013W BSP1Q06604 576 aa14.46□□□□□ -0.09
DEP1YAL013W CUE5Q08412 411 aaKnown RBP14.46□□□□□ -0.09
DEP1YAL013W AHC1Q12433 566 aa14.46□□□□□ -0.09
DEP1YAL013W HIS1P00498 297 aaKnown RBP14.45□□□□□ -0.1
DEP1YAL013W ENO2P00925 437 aaKnown RBP14.45□□□□□ -0.1
DEP1YAL013W ERR1P0CX10 437 aa14.45□□□□□ -0.1
DEP1YAL013W ERR2P0CX11 437 aa14.45□□□□□ -0.1
DEP1YAL013W ADY2P25613 283 aa14.45□□□□□ -0.1
DEP1YAL013W UTR2P32623 467 aa14.45□□□□□ -0.1
DEP1YAL013W SRP101P32916 621 aa14.45□□□□□ -0.1
DEP1YAL013W SFB3P38810 929 aa14.45□□□□□ -0.1
DEP1YAL013W SPC97P38863 823 aa14.45□□□□□ -0.1
DEP1YAL013W NUP60P39705 539 aa14.45□□□□□ -0.1
DEP1YAL013W ERR3P42222 437 aa14.45□□□□□ -0.1
DEP1YAL013W RPS10BP46784 105 aaKnown RBP14.45□□□□□ -0.1
DEP1YAL013W EAR1Q03212 550 aa14.45□□□□□ -0.1
DEP1YAL013W YMR160WQ03823 816 aa14.45□□□□□ -0.1
DEP1YAL013W ARP9Q05123 467 aa14.45□□□□□ -0.1
DEP1YAL013W ADE13Q05911 482 aaKnown RBP14.45□□□□□ -0.1
DEP1YAL013W AAD15Q08361 143 aa14.45□□□□□ -0.1
DEP1YAL013W RPS10AQ08745 105 aaPredicted RBP14.45□□□□□ -0.1
DEP1YAL013W YPQ1Q12010 308 aa14.45□□□□□ -0.1
DEP1YAL013W LPX1Q12405 387 aaKnown RBP14.45□□□□□ -0.1
DEP1YAL013W TEF1P02994 458 aaKnown RBP14.44□□□□□ -0.1
DEP1YAL013W KAP104P38217 918 aaKnown RBP14.44□□□□□ -0.1
DEP1YAL013W VPS41P38959 992 aa14.44□□□□□ -0.1
DEP1YAL013W UTP8P53276 713 aaKnown RBP14.44□□□□□ -0.1
DEP1YAL013W LSC1P53598 329 aaKnown RBP14.44□□□□□ -0.1
DEP1YAL013W NRD1P53617 575 aaKnown RBP RIP-Chip data14.44□□□□□ -0.1not detected
DEP1YAL013W COP1P53622 1201 aaKnown RBP14.44□□□□□ -0.1
DEP1YAL013W ECM38Q05902 660 aaPredicted RBP14.44□□□□□ -0.1
DEP1YAL013W NCA2Q12374 616 aa14.44□□□□□ -0.1
DEP1YAL013W PDE1P22434 369 aa14.43□□□□□ -0.1
DEP1YAL013W SMF2P38778 549 aa14.43□□□□□ -0.1
DEP1YAL013W MTF1P14908 341 aaKnown RBP14.42□□□□□ -0.1
DEP1YAL013W PEX1P24004 1043 aa14.42□□□□□ -0.1
DEP1YAL013W GID7P25569 745 aa14.42□□□□□ -0.1
DEP1YAL013W YBP1P38315 674 aa14.42□□□□□ -0.1
DEP1YAL013W PSP1P50896 841 aaKnown RBP14.42□□□□□ -0.1
DEP1YAL013W KTR5P53966 522 aaPredicted RBP14.42□□□□□ -0.1
DEP1YAL013W YLR257WQ06146 321 aaKnown RBP14.42□□□□□ -0.1
DEP1YAL013W SWC7Q06707 132 aa14.42□□□□□ -0.1
DEP1YAL013W MIS1P09440 975 aaKnown RBP14.41□□□□□ -0.1
DEP1YAL013W KES1P35844 434 aaKnown RBP14.41□□□□□ -0.1
DEP1YAL013W EMW1P42842 904 aaKnown RBP14.41□□□□□ -0.1
DEP1YAL013W CNN1P43618 361 aa14.41□□□□□ -0.1
DEP1YAL013W DLD2P46681 530 aaKnown RBP14.41□□□□□ -0.1
DEP1YAL013W GND2P53319 492 aa14.41□□□□□ -0.1
DEP1YAL013W ENT5Q03769 411 aaKnown RBP14.41□□□□□ -0.1
DEP1YAL013W FAR8Q05040 523 aa14.41□□□□□ -0.1
DEP1YAL013W SRV2P17555 526 aaKnown RBP14.4□□□□□ -0.1
DEP1YAL013W KIP2P28743 706 aa14.4□□□□□ -0.1
DEP1YAL013W DPH1P40487 425 aaKnown RBP14.4□□□□□ -0.1
Retrieved 100 of 5,963 RNA–protein pairs in 35.2 ms