RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 RRP12Q5JTH9 1297 aaKnown RBP17.22■□□□□ 0.35
CLN3-253ENST00000636977 CCAR2Q8N163 923 aaKnown RBP17.22■□□□□ 0.35
CLN3-253ENST00000636977 SLC26A6Q9BXS9 759 aa17.22■□□□□ 0.35
CLN3-253ENST00000636977 FOXN1O15353 648 aa17.22■□□□□ 0.35
CLN3-253ENST00000636977 PTPN14Q15678 1187 aa17.22■□□□□ 0.35
CLN3-253ENST00000636977 A0A0G2JS52 829 aa17.22■□□□□ 0.35
CLN3-253ENST00000636977 IARSP41252 1262 aaKnown RBP17.22■□□□□ 0.35
CLN3-253ENST00000636977 PUM3Q15397 648 aaKnown RBP17.22■□□□□ 0.35
CLN3-253ENST00000636977 SUSD4Q5VX71 490 aa17.22■□□□□ 0.35
CLN3-253ENST00000636977 DPF2Q92785 391 aa17.22■□□□□ 0.35
CLN3-253ENST00000636977 IFIT3O14879 490 aaKnown RBP17.21■□□□□ 0.35
CLN3-253ENST00000636977 GRIN1Q05586 938 aa17.21■□□□□ 0.35
CLN3-253ENST00000636977 FOXP4Q8IVH2 680 aaPredicted RBP17.21■□□□□ 0.35
CLN3-253ENST00000636977 LPIN2Q92539 896 aa17.21■□□□□ 0.35
CLN3-253ENST00000636977 KCNJ14Q9UNX9 436 aa17.21■□□□□ 0.35
CLN3-253ENST00000636977 IQSEC3Q9UPP2 1182 aaPredicted RBP17.21■□□□□ 0.35
CLN3-253ENST00000636977 BCL9O00512 1426 aa17.21■□□□□ 0.35
CLN3-253ENST00000636977 NEMFO60524 1076 aa17.21■□□□□ 0.35
CLN3-253ENST00000636977 BCAMP50895 628 aa17.21■□□□□ 0.35
CLN3-253ENST00000636977 E4F1Q66K89 784 aaPredicted RBP17.21■□□□□ 0.35
CLN3-253ENST00000636977 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.21■□□□□ 0.35
CLN3-253ENST00000636977 OSBPL5Q9H0X9 879 aaPredicted RBP17.21■□□□□ 0.35
CLN3-253ENST00000636977 NAPBQ9H115 298 aa17.21■□□□□ 0.35
CLN3-253ENST00000636977 HPSEQ9Y251 543 aa17.21■□□□□ 0.35
CLN3-253ENST00000636977 PAXBP1Q9Y5B6 917 aa17.21■□□□□ 0.35
CLN3-253ENST00000636977 MYH3P11055 1940 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 LRP6O75581 1613 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 WTIPA6NIX2 430 aaPredicted RBP17.2■□□□□ 0.34
CLN3-253ENST00000636977 GSG1L2A8MUP6 293 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 PATL2C9JE40 543 aaKnown RBP17.2■□□□□ 0.34
CLN3-253ENST00000636977 GOLGA8FQ08AF8 430 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 GOLGA8DPQ0D2H9 430 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 LONRF3Q496Y0 759 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 LCORLQ8N3X6 602 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 MIGA1Q8NAN2 632 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 TOMM22Q9NS69 142 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 NUP98P52948 1817 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 HSP90AA4PQ58FG1 418 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 ZNF34Q8IZ26 560 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 BPIFA3Q9BQP9 254 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 ECM29Q5VYK3 1845 aa17.2■□□□□ 0.34
CLN3-253ENST00000636977 BTBD18B2RXH4 712 aa17.19■□□□□ 0.34
CLN3-253ENST00000636977 METTL16Q86W50 562 aaKnown RBP17.19■□□□□ 0.34
CLN3-253ENST00000636977 TMEM87BQ96K49 555 aa17.19■□□□□ 0.34
CLN3-253ENST00000636977 ZNF215Q9UL58 517 aaPredicted RBP17.19■□□□□ 0.34
CLN3-253ENST00000636977 SLC12A7Q9Y666 1083 aa17.19■□□□□ 0.34
CLN3-253ENST00000636977 KIF20AO95235 890 aa17.19■□□□□ 0.34
CLN3-253ENST00000636977 FANCCQ00597 558 aa17.19■□□□□ 0.34
CLN3-253ENST00000636977 CDKL5O76039 1030 aa17.19■□□□□ 0.34
CLN3-253ENST00000636977 UQCRFS1P1P0C7P4 283 aa17.19■□□□□ 0.34
CLN3-253ENST00000636977 TOB1P50616 345 aaPredicted RBP17.18■□□□□ 0.34
CLN3-253ENST00000636977 SGMS1Q86VZ5 419 aa17.18■□□□□ 0.34
CLN3-253ENST00000636977 TUBE1Q9UJT0 475 aa17.18■□□□□ 0.34
CLN3-253ENST00000636977 BMP6P22004 513 aa17.18■□□□□ 0.34
CLN3-253ENST00000636977 PDE4BQ07343 736 aa17.18■□□□□ 0.34
CLN3-253ENST00000636977 RESP18Q5W5W9 173 aa17.18■□□□□ 0.34
CLN3-253ENST00000636977 PPP6R2O75170 966 aa17.17■□□□□ 0.34
CLN3-253ENST00000636977 CPLX2Q6PUV4 134 aaKnown RBP17.17■□□□□ 0.34
CLN3-253ENST00000636977 GTPBP4Q9BZE4 634 aaKnown RBP17.17■□□□□ 0.34
CLN3-253ENST00000636977 GSDMDP57764 484 aa17.17■□□□□ 0.34
CLN3-253ENST00000636977 SSRP1Q08945 709 aaKnown RBP17.17■□□□□ 0.34
CLN3-253ENST00000636977 AKNAD1Q5T1N1 836 aa17.17■□□□□ 0.34
CLN3-253ENST00000636977 ZNF771Q7L3S4 317 aaPredicted RBP17.17■□□□□ 0.34
CLN3-253ENST00000636977 SLC4A4Q9Y6R1 1079 aa17.17■□□□□ 0.34
CLN3-253ENST00000636977 TMEM232C9JQI7 657 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 SLC5A1P13866 664 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 ATP2B1P20020 1258 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 MAP3K12Q12852 859 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 NR5A1Q13285 461 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 TRIM29Q14134 588 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 ALX1Q15699 326 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 ADGRA1Q86SQ6 560 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 MPHOSPH8Q99549 860 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 PCDHA5Q9Y5H7 936 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 MROH5Q6ZUA9 1318 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 TDO2P48775 406 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 LRRN4CLQ8ND94 238 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 PPP1R13BQ96KQ4 1090 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 IMPACTQ9P2X3 320 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 KCNH3Q9ULD8 1083 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 ANKRD36CQ5JPF3 1778 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 NPHP1O15259 732 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 MFSD6Q6ZSS7 791 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 GRAMD1CQ8IYS0 662 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 OXER1Q8TDS5 423 aa17.16■□□□□ 0.34
CLN3-253ENST00000636977 ERVV-1B6SEH8 477 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 FMNL1O95466 1100 aaPredicted RBP17.15■□□□□ 0.34
CLN3-253ENST00000636977 SFPQP23246 707 aaKnown RBP eCLIP17.15■□□□□ 0.34
CLN3-253ENST00000636977 IL6STP40189 918 aaPredicted RBP17.15■□□□□ 0.34
CLN3-253ENST00000636977 LIFRP42702 1097 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 NOSTRINQ8IVI9 506 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 DIS3L2Q8IYB7 885 aaKnown RBP17.15■□□□□ 0.34
CLN3-253ENST00000636977 SDR42E1Q8WUS8 393 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 TIGD1Q96MW7 591 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 FANCLQ9NW38 375 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 PRR29P0C7W0 189 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 CNNM3Q8NE01 707 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 NUP133Q8WUM0 1156 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 ACSBG1Q96GR2 724 aa17.15■□□□□ 0.34
CLN3-253ENST00000636977 COL4A1P02462 1669 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms