RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 SLIT2O94813 1529 aa23.36■■□□□ 1.33
SHKBP1-225ENST00000600733 MROH5Q6ZUA9 1318 aa23.36■■□□□ 1.33
SHKBP1-225ENST00000600733 ZNF335Q9H4Z2 1342 aaPredicted RBP23.36■■□□□ 1.33
SHKBP1-225ENST00000600733 ALX1Q15699 326 aa23.36■■□□□ 1.33
SHKBP1-225ENST00000600733 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.36■■□□□ 1.33
SHKBP1-225ENST00000600733 TUBE1Q9UJT0 475 aa23.36■■□□□ 1.33
SHKBP1-225ENST00000600733 E4F1Q66K89 784 aaPredicted RBP23.35■■□□□ 1.33
SHKBP1-225ENST00000600733 ZNF34Q8IZ26 560 aa23.35■■□□□ 1.33
SHKBP1-225ENST00000600733 PRKAB2O43741 272 aa23.35■■□□□ 1.33
SHKBP1-225ENST00000600733 FANCCQ00597 558 aa23.35■■□□□ 1.33
SHKBP1-225ENST00000600733 MAP3K12Q12852 859 aa23.35■■□□□ 1.33
SHKBP1-225ENST00000600733 RESP18Q5W5W9 173 aa23.35■■□□□ 1.33
SHKBP1-225ENST00000600733 LRP5O75197 1615 aa23.35■■□□□ 1.33
SHKBP1-225ENST00000600733 ERVV-1B6SEH8 477 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 IKBKBO14920 756 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 SLC5A1P13866 664 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 SFPQP23246 707 aaKnown RBP eCLIP23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 GUCY1A2P33402 732 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 LIFRP42702 1097 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 STK11IPQ8N1F8 1099 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 CCDC150Q8NCX0 1101 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 ZKSCAN3Q9BRR0 538 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 KCND1Q9NSA2 647 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 GSG1L2A8MUP6 293 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 SSRP1Q08945 709 aaKnown RBP23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 LONRF3Q496Y0 759 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 RRP12Q5JTH9 1297 aaKnown RBP23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 SEC31BQ9NQW1 1179 aa23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 ZNF215Q9UL58 517 aaPredicted RBP23.34■■□□□ 1.33
SHKBP1-225ENST00000600733 ARAP2Q8WZ64 1704 aa23.33■■□□□ 1.33
SHKBP1-225ENST00000600733 AKNAD1Q5T1N1 836 aa23.33■■□□□ 1.33
SHKBP1-225ENST00000600733 METTL16Q86W50 562 aaKnown RBP23.33■■□□□ 1.33
SHKBP1-225ENST00000600733 FAM237AA0A1B0GTK4 181 aa23.33■■□□□ 1.32
SHKBP1-225ENST00000600733 IL6STP40189 918 aaPredicted RBP23.33■■□□□ 1.32
SHKBP1-225ENST00000600733 SPECC1Q5M775 1068 aa23.33■■□□□ 1.32
SHKBP1-225ENST00000600733 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.33■■□□□ 1.32
SHKBP1-225ENST00000600733 DOCK2Q92608 1830 aa23.32■■□□□ 1.32
SHKBP1-225ENST00000600733 SUSD4Q5VX71 490 aa23.32■■□□□ 1.32
SHKBP1-225ENST00000600733 LCORLQ8N3X6 602 aa23.32■■□□□ 1.32
SHKBP1-225ENST00000600733 MPHOSPH8Q99549 860 aa23.32■■□□□ 1.32
SHKBP1-225ENST00000600733 TOMM22Q9NS69 142 aa23.32■■□□□ 1.32
SHKBP1-225ENST00000600733 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.32■■□□□ 1.32
SHKBP1-225ENST00000600733 V9GYY5 206 aaPredicted RBP23.32■■□□□ 1.32
SHKBP1-225ENST00000600733 BTBD18B2RXH4 712 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 FMNL1O95466 1100 aaPredicted RBP23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 MFSD6Q6ZSS7 791 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 FOXP4Q8IVH2 680 aaPredicted RBP23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 CCDC82Q8N4S0 544 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 KIF18AQ8NI77 898 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 DPF2Q92785 391 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 KCNH3Q9ULD8 1083 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 CUTAO60888 179 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 NOSTRINQ8IVI9 506 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 CMTR1Q8N1G2 835 aaKnown RBP23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 PPP1R13BQ96KQ4 1090 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 KCNJ14Q9UNX9 436 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 STK36Q9NRP7 1315 aa23.31■■□□□ 1.32
SHKBP1-225ENST00000600733 TDO2P48775 406 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 BCAMP50895 628 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 MYL5Q02045 173 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 CNNM3Q8NE01 707 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 CNNM2Q9H8M5 875 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 DISP2A7MBM2 1401 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 FOXN1O15353 648 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 IFNAR1P17181 557 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 KRBA2Q6ZNG9 492 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 MIGA1Q8NAN2 632 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 KRT23Q9C075 422 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 SLC4A4Q9Y6R1 1079 aa23.3■■□□□ 1.32
SHKBP1-225ENST00000600733 ZSCAN20P17040 1043 aaPredicted RBP23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 TOB1P50616 345 aaPredicted RBP23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 PTPN21Q16825 1174 aa23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 PCDHA5Q9Y5H7 936 aa23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 SERPINC1P01008 464 aa23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 MMP1P03956 469 aa23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 UBASH3AP57075 661 aa23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 GRIN1Q05586 938 aa23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 DIS3L2Q8IYB7 885 aaKnown RBP23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 KRI1Q8N9T8 703 aaKnown RBP23.29■■□□□ 1.32
SHKBP1-225ENST00000600733 RTN1Q16799 776 aa23.28■■□□□ 1.32
SHKBP1-225ENST00000600733 CGNQ9P2M7 1197 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-225ENST00000600733 TIAM2Q8IVF5 1701 aa23.28■■□□□ 1.32
SHKBP1-225ENST00000600733 BMP6P22004 513 aa23.28■■□□□ 1.32
SHKBP1-225ENST00000600733 PKNOX2Q96KN3 472 aa23.28■■□□□ 1.32
SHKBP1-225ENST00000600733 WTAPQ15007 396 aa23.27■■□□□ 1.32
SHKBP1-225ENST00000600733 CFAP100Q494V2 611 aa23.27■■□□□ 1.32
SHKBP1-225ENST00000600733 STAG1Q8WVM7 1258 aa23.27■■□□□ 1.32
SHKBP1-225ENST00000600733 EXOC5O00471 708 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 PDE4BQ07343 736 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 WASF1Q92558 559 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 NACAP1Q9BZK3 213 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 FANCLQ9NW38 375 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 PRDM4Q9UKN5 801 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 PSDA5PKW4 1024 aaPredicted RBP23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 KIF2AO00139 706 aaPredicted RBP23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 EIF5P55010 431 aaKnown RBP23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 NR5A1Q13285 461 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 SAFBQ15424 915 aaKnown RBP eCLIP23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 OLFM4Q6UX06 510 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 TRIM22Q8IYM9 498 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms