RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 HDAC5Q9UQL6 1122 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 TNNQ9UQP3 1299 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 SALL1Q9NSC2 1324 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 RPAP1Q9BWH6 1393 aaPredicted RBP10.52□□□□□ -0.73
USP28-215ENST00000545608 BTBD19C9JJ37 291 aa10.51□□□□□ -0.73
USP28-215ENST00000545608 SEMA3EO15041 775 aa10.51□□□□□ -0.73
USP28-215ENST00000545608 CETPP11597 493 aa10.51□□□□□ -0.73
USP28-215ENST00000545608 PPIL2Q13356 520 aa10.51□□□□□ -0.73
USP28-215ENST00000545608 SNAPC2Q13487 334 aa10.51□□□□□ -0.73
USP28-215ENST00000545608 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.51□□□□□ -0.73
USP28-215ENST00000545608 ZNF112Q9UJU3 913 aa10.51□□□□□ -0.73
USP28-215ENST00000545608 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.51□□□□□ -0.73
USP28-215ENST00000545608 OTOFQ9HC10 1997 aa10.51□□□□□ -0.73
USP28-215ENST00000545608 PDE4DIPQ5VU43 2346 aa10.51□□□□□ -0.73
USP28-215ENST00000545608 SRGAP3O43295 1099 aa10.5□□□□□ -0.73
USP28-215ENST00000545608 TLR2O60603 784 aa10.5□□□□□ -0.73
USP28-215ENST00000545608 GNAI3P08754 354 aa10.5□□□□□ -0.73
USP28-215ENST00000545608 PPATQ06203 517 aa10.5□□□□□ -0.73
USP28-215ENST00000545608 TFCP2Q12800 502 aa10.5□□□□□ -0.73
USP28-215ENST00000545608 RASGRF1Q13972 1273 aa10.5□□□□□ -0.73
USP28-215ENST00000545608 PRPF38BQ5VTL8 546 aaKnown RBP10.5□□□□□ -0.73
USP28-215ENST00000545608 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.5□□□□□ -0.73
USP28-215ENST00000545608 ARMC5Q96C12 935 aa10.5□□□□□ -0.73
USP28-215ENST00000545608 LAMB1P07942 1786 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 A0A1B0GUL7 405 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 BCAR3O75815 825 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 SLURP2P0DP57 97 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 TRIM27P14373 513 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 PDE4AP27815 886 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 MTX1Q13505 466 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 SH3BP5LQ7L8J4 393 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 XAGE2Q96GT9 111 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 PHF12Q96QT6 1004 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 ARHGAP39Q9C0H5 1083 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 ZCCHC17Q9NP64 241 aaKnown RBP10.49□□□□□ -0.73
USP28-215ENST00000545608 ABCF2Q9UG63 623 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 PTCH2Q9Y6C5 1203 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 GAKO14976 1311 aa10.49□□□□□ -0.73
USP28-215ENST00000545608 EN2P19622 333 aaPredicted RBP10.48□□□□□ -0.73
USP28-215ENST00000545608 RGS3P49796 1198 aa10.48□□□□□ -0.73
USP28-215ENST00000545608 MOGSQ13724 837 aa10.48□□□□□ -0.73
USP28-215ENST00000545608 ARHGEF6Q15052 776 aa10.48□□□□□ -0.73
USP28-215ENST00000545608 NOL9Q5SY16 702 aaKnown RBP10.48□□□□□ -0.73
USP28-215ENST00000545608 ZGPATQ8N5A5 531 aaKnown RBP10.48□□□□□ -0.73
USP28-215ENST00000545608 FRAT1Q92837 279 aaPredicted RBP10.48□□□□□ -0.73
USP28-215ENST00000545608 CLUAP1Q96AJ1 413 aa10.48□□□□□ -0.73
USP28-215ENST00000545608 FAM163AQ96GL9 167 aaPredicted RBP10.48□□□□□ -0.73
USP28-215ENST00000545608 IDI2Q9BXS1 227 aa10.48□□□□□ -0.73
USP28-215ENST00000545608 KCNH4Q9UQ05 1017 aa10.48□□□□□ -0.73
USP28-215ENST00000545608 AKAP2Q9Y2D5 859 aa10.48□□□□□ -0.73
USP28-215ENST00000545608 PNMA6EA0A0J9YXQ4 647 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 DDTLA6NHG4 134 aaPredicted RBP10.47□□□□□ -0.73
USP28-215ENST00000545608 PHF20L1A8MW92 1017 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 PDHXO00330 501 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 IPO8O15397 1037 aaKnown RBP10.47□□□□□ -0.73
USP28-215ENST00000545608 ENTPD3O75355 529 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 WDHD1O75717 1129 aaPredicted RBP10.47□□□□□ -0.73
USP28-215ENST00000545608 GNAI2P04899 355 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 CTGFP29279 349 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 LACTBP83111 547 aaPredicted RBP10.47□□□□□ -0.73
USP28-215ENST00000545608 MVPQ14764 893 aaKnown RBP10.47□□□□□ -0.73
USP28-215ENST00000545608 C17orf99Q6UX52 265 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 ATF7IPQ6VMQ6 1270 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 ANKRD23Q86SG2 305 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 DZIP1Q86YF9 867 aaKnown RBP10.47□□□□□ -0.73
USP28-215ENST00000545608 ZNF384Q8TF68 577 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 ZNF333Q96JL9 665 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 NEUROD6Q96NK8 337 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 TMEM106CQ9BVX2 250 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 DDX4Q9NQI0 724 aaKnown RBP10.47□□□□□ -0.73
USP28-215ENST00000545608 HMG20BQ9P0W2 317 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 CPA4Q9UI42 421 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 ATRNL1Q5VV63 1379 aa10.47□□□□□ -0.73
USP28-215ENST00000545608 BTDP43251 543 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 RHBDL3P58872 404 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 MAP3K10Q02779 954 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 MECOMQ03112 1051 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 KIF22Q14807 665 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 SLC9C1Q4G0N8 1177 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 SPTY2D1Q68D10 685 aaPredicted RBP10.46□□□□□ -0.73
USP28-215ENST00000545608 GPAT2Q6NUI2 795 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 PI16Q6UXB8 463 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 TBC1D9Q6ZT07 1266 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 ERICH6Q7L0X2 663 aa10.46□□□□□ -0.73
USP28-215ENST00000545608 ZSCAN29Q8IWY8 852 aaPredicted RBP10.46□□□□□ -0.73
USP28-215ENST00000545608 PDS5AQ29RF7 1337 aaKnown RBP10.46□□□□□ -0.73
USP28-215ENST00000545608 RFX7Q2KHR2 1363 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 MROH7-TTC4A0A0A0MT08 1334 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 ADGRA2Q96PE1 1338 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 GPR75-ASB3A0A0A6YYF3 556 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 CXCL11O14625 94 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 MYCP01106 439 aaPredicted RBP10.45□□□□□ -0.74
USP28-215ENST00000545608 PTPRAP18433 802 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 G3BP1Q13283 466 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP28-215ENST00000545608 PICALMQ13492 652 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 NBPF11Q86T75 865 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 SLF2Q8IX21 1173 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 SCYL3Q8IZE3 742 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 TMEM57Q8N5G2 664 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 SH3TC2Q8TF17 1288 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms