RNA–Protein interactions for RNA: ENST00000542354.1

TRAV1-1-201, Transcript of T cell receptor alpha variable 1-1, humanhuman

APPRIS P1 BASIC

Gene TRAV1-1, Length 392 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1-201ENST00000542354 GOPCQ9HD26 462 aa3.34□□□□□ -1.87
TRAV1-1-201ENST00000542354 C11orf16Q9NQ32 467 aa3.34□□□□□ -1.87
TRAV1-1-201ENST00000542354 AVENQ9NQS1 362 aaPredicted RBP3.34□□□□□ -1.87
TRAV1-1-201ENST00000542354 ADARB2Q9NS39 739 aaKnown RBP3.34□□□□□ -1.87
TRAV1-1-201ENST00000542354 PGAP2Q9UHJ9 254 aa3.34□□□□□ -1.87
TRAV1-1-201ENST00000542354 NCOR2Q9Y618 2525 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 LOC102724428A0A0B4J2F2 783 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 ARAFP10398 606 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 ADH6P28332 368 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 ADD1P35611 737 aaKnown RBP3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 SIK1P57059 783 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 DDR1Q08345 913 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 PRRT3Q5FWE3 981 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 MPRIPQ6WCQ1 1025 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 USP48Q86UV5 1035 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 ARHGEF25Q86VW2 580 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 USP38Q8NB14 1042 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 JDP2Q8WYK2 163 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 SH2B1Q9NRF2 756 aaPredicted RBP3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 CUEDC1Q9NWM3 386 aaPredicted RBP3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 CHIC2Q9UKJ5 165 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 PCDHB11Q9Y5F2 797 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 RIF1Q5UIP0 2472 aaKnown RBP3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 GCN1Q92616 2671 aaKnown RBP3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 TAF1LQ8IZX4 1826 aa3.33□□□□□ -1.88
TRAV1-1-201ENST00000542354 USP34Q70CQ2 3546 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 MED19A0JLT2 244 aaPredicted RBP3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 PI4K2BG5E9Z4 385 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 POLRMTO00411 1230 aaKnown RBP3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 FARP2O94887 1054 aaPredicted RBP3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 SPATA31C1P0DKV0 1188 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 ALAS2P22557 587 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 FGFR3P22607 806 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 TM4SF1P30408 202 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 MAGEA10P43363 369 aaPredicted RBP3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 GJA8P48165 433 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 SCNN1DP51172 638 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 SREBF2Q12772 1141 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 USP4Q13107 963 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 NR1H3Q13133 447 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 NEUROD1Q13562 356 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 AAK1Q2M2I8 961 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 TBC1D9Q6ZT07 1266 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 NLRP8Q86W28 1048 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 RASAL3Q86YV0 1011 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 KCNH5Q8NCM2 988 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 ZCRB1Q8TBF4 217 aaKnown RBP3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 RHBDD1Q8TEB9 315 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 CNKSR1Q969H4 720 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 SHISA4Q96DD7 197 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 R3HDMLQ9H3Y0 253 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 SLC24A3Q9HC58 644 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 ARHGEF10LQ9HCE6 1279 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 RALYQ9UKM9 306 aaKnown RBP3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 ZMYND8Q9ULU4 1186 aaPredicted RBP3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 TOGARAM1Q9Y4F4 1720 aa3.32□□□□□ -1.88
TRAV1-1-201ENST00000542354 PTPN13Q12923 2485 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 FER1L6Q2WGJ9 1857 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 SCO2A0A1W2PP80 73 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 KRBA1A5PL33 1030 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 RPS6KA4O75676 772 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 GJB1P08034 283 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 CAPN2P17655 700 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 TATP17735 454 aaPredicted RBP3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 RFC5P40937 340 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 EIF5P55010 431 aaKnown RBP3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 FKBP4Q02790 459 aaKnown RBP eCLIP3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 KDF1Q8NAX2 398 aaPredicted RBP3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 CD99L2Q8TCZ2 262 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 PPM1EQ8WY54 764 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 NUDT16Q96DE0 195 aaKnown RBP3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 OCSTAMPQ9BR26 566 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 CRISPLD1Q9H336 500 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 GPAMQ9HCL2 828 aa3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 ZNF277Q9NRM2 450 aaPredicted RBP3.31□□□□□ -1.88
TRAV1-1-201ENST00000542354 E9PCH4 1651 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 MAP1BP46821 2468 aaKnown RBP3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 ZNF609O15014 1411 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 USP31Q70CQ4 1352 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 WDFY4Q6ZS81 3184 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 TRAK2O60296 914 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 FURINP09958 794 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 EPXP11678 715 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 PDE6BP35913 854 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 IARSP41252 1262 aaKnown RBP3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 GATA4P43694 442 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 EIF4G2P78344 907 aaKnown RBP eCLIP3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 CENPCQ03188 943 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 ITPK1Q13572 414 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 CCDC93Q567U6 631 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 ZMYM1Q5SVZ6 1142 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 RNF135Q8IUD6 432 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 C7orf61Q8IZ16 206 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 RTKN2Q8IZC4 609 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 SH3TC2Q8TF17 1288 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 PSMG3-AS1Q96PY0 264 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 KDM4CQ9H3R0 1056 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 GPRC5DQ9NZD1 345 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 GGA1Q9UJY5 639 aa3.3□□□□□ -1.88
TRAV1-1-201ENST00000542354 PRR12Q9ULL5 1215 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms