RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CCDC57Q2TAC2 916 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 USP50Q70EL3 339 aaPredicted RBP8.41□□□□□ -1.06
VPS52-219ENST00000493379 R3HDMLQ9H3Y0 253 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 PRM3Q9NNZ6 103 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 COPRSQ9NQ92 184 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 ZBTB40Q9NUA8 1239 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 POLLQ9UGP5 575 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 COL4A1P02462 1669 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 GNAI2P04899 355 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 ATP2B4P23634 1241 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 IGHMBP2P38935 993 aaKnown RBP8.4□□□□□ -1.06
VPS52-219ENST00000493379 IARSP41252 1262 aaKnown RBP8.4□□□□□ -1.06
VPS52-219ENST00000493379 GPSM2P81274 684 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 ATP8B2P98198 1209 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 FUT2Q10981 343 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 MAP3K12Q12852 859 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 MVPQ14764 893 aaKnown RBP8.4□□□□□ -1.06
VPS52-219ENST00000493379 SLC51AQ86UW1 340 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.4□□□□□ -1.06
VPS52-219ENST00000493379 TBC1D16Q8TBP0 767 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 MARVELD3Q96A59 401 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 CCDC97Q96F63 343 aaPredicted RBP8.4□□□□□ -1.06
VPS52-219ENST00000493379 ANKRD2Q9GZV1 360 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 NBPF3Q9H094 633 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 LEMD3Q9Y2U8 911 aa8.4□□□□□ -1.06
VPS52-219ENST00000493379 XDHP47989 1333 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 WTIPA6NIX2 430 aaPredicted RBP8.39□□□□□ -1.07
VPS52-219ENST00000493379 PLIN1O60240 522 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 CIAO1O76071 339 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 CFHP08603 1231 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 ABL2P42684 1182 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 CTDSPL2Q05D32 466 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 LHX8Q68G74 356 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 DPP8Q6V1X1 898 aaPredicted RBP8.39□□□□□ -1.07
VPS52-219ENST00000493379 LDHAL6AQ6ZMR3 332 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 FTSJ3Q8IY81 847 aaKnown RBP8.39□□□□□ -1.07
VPS52-219ENST00000493379 VGLL2Q8N8G2 317 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 PANK1Q8TE04 598 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 SSH3Q8TE77 659 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 DPF3Q92784 378 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 MPHOSPH8Q99549 860 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 TMX4Q9H1E5 349 aaPredicted RBP8.39□□□□□ -1.07
VPS52-219ENST00000493379 CHMP4BQ9H444 224 aaKnown RBP8.39□□□□□ -1.07
VPS52-219ENST00000493379 DDX19BQ9UMR2 479 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 NSFL1CQ9UNZ2 370 aaKnown RBP8.39□□□□□ -1.07
VPS52-219ENST00000493379 NOP58Q9Y2X3 529 aaKnown RBP8.39□□□□□ -1.07
VPS52-219ENST00000493379 TRIM17Q9Y577 477 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 LRRFIP2Q9Y608 721 aaKnown RBP8.39□□□□□ -1.07
VPS52-219ENST00000493379 LRRC37AA6NMS7 1700 aa8.39□□□□□ -1.07
VPS52-219ENST00000493379 POLR2AP24928 1970 aaKnown RBP8.39□□□□□ -1.07
VPS52-219ENST00000493379 FAM205CA6NFA0 338 aa8.38□□□□□ -1.07
VPS52-219ENST00000493379 MYCP01106 439 aaPredicted RBP8.38□□□□□ -1.07
VPS52-219ENST00000493379 CHRNDQ07001 517 aa8.38□□□□□ -1.07
VPS52-219ENST00000493379 UBE4AQ14139 1066 aa8.38□□□□□ -1.07
VPS52-219ENST00000493379 C20orf194Q5TEA3 1177 aa8.38□□□□□ -1.07
VPS52-219ENST00000493379 ATG9AQ7Z3C6 839 aa8.38□□□□□ -1.07
VPS52-219ENST00000493379 USP48Q86UV5 1035 aa8.38□□□□□ -1.07
VPS52-219ENST00000493379 RPAP2Q8IXW5 612 aaPredicted RBP8.38□□□□□ -1.07
VPS52-219ENST00000493379 ZFRQ96KR1 1074 aaKnown RBP8.38□□□□□ -1.07
VPS52-219ENST00000493379 CCDC85AQ96PX6 553 aaPredicted RBP8.38□□□□□ -1.07
VPS52-219ENST00000493379 EYA3Q99504 573 aa8.38□□□□□ -1.07
VPS52-219ENST00000493379 PUS3Q9BZE2 481 aaKnown RBP8.38□□□□□ -1.07
VPS52-219ENST00000493379 GGA1Q9UJY5 639 aa8.38□□□□□ -1.07
VPS52-219ENST00000493379 DUOX1Q9NRD9 1551 aa8.38□□□□□ -1.07
VPS52-219ENST00000493379 CACNA1GO43497 2377 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 MROH5Q6ZUA9 1318 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 CFAP99D6REC4 459 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 TK2O00142 265 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 EYA2O00167 538 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 PDE8BO95263 885 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 FGFR2P21802 821 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 HIRAP54198 1017 aaPredicted RBP8.37□□□□□ -1.07
VPS52-219ENST00000493379 RRP1P56182 461 aaKnown RBP8.37□□□□□ -1.07
VPS52-219ENST00000493379 AAMPQ13685 434 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 WASHC4Q2M389 1173 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 PODNQ7Z5L7 613 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 HELBQ8NG08 1087 aaPredicted RBP8.37□□□□□ -1.07
VPS52-219ENST00000493379 ZNF594Q96JF6 807 aaPredicted RBP8.37□□□□□ -1.07
VPS52-219ENST00000493379 YTHDC1Q96MU7 727 aaKnown RBP8.37□□□□□ -1.07
VPS52-219ENST00000493379 GBA2Q9HCG7 927 aaPredicted RBP8.37□□□□□ -1.07
VPS52-219ENST00000493379 HMX1Q9NP08 348 aaPredicted RBP8.37□□□□□ -1.07
VPS52-219ENST00000493379 ZNRF3Q9ULT6 936 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 MYH3P11055 1940 aa8.37□□□□□ -1.07
VPS52-219ENST00000493379 MED23Q9ULK4 1368 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 ZNF804BA4D1E1 1349 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 PNMA6EA0A0J9YXQ4 647 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 C6orf229H3BNL8 230 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 FKTNO75072 461 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 RNF40O75150 1001 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 EIF6P56537 245 aaKnown RBP8.36□□□□□ -1.07
VPS52-219ENST00000493379 LRRC24Q50LG9 513 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 CEP85Q6P2H3 762 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 OTOP1Q7RTM1 612 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 ALYREFQ86V81 257 aaKnown RBP8.36□□□□□ -1.07
VPS52-219ENST00000493379 RASAL3Q86YV0 1011 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 ITPRIPQ8IWB1 547 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 SIRT2Q8IXJ6 389 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 JDP2Q8WYK2 163 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 TRIM34Q9BYJ4 488 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 ZC3H12CQ9C0D7 883 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms