RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 SEMA3EO15041 775 aa8.71□□□□□ -1.02
CDC42BPA-208ENST00000442054 COL9A3Q14050 684 aaPredicted RBP8.71□□□□□ -1.02
CDC42BPA-208ENST00000442054 OTUD5Q96G74 571 aa8.71□□□□□ -1.02
CDC42BPA-208ENST00000442054 RAD50Q92878 1312 aa8.71□□□□□ -1.02
CDC42BPA-208ENST00000442054 SGSM2O43147 1006 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 OFD1O75665 1012 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 NASPP49321 788 aaPredicted RBP8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 TERF1P54274 439 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 ZYXQ15942 572 aaKnown RBP8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 TGFBRAP1Q8WUH2 860 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 RUFY2Q8WXA3 655 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 PKNOX2Q96KN3 472 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 KIF3CO14782 793 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 PRDX5P30044 214 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 ZAP70P43403 619 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 NAPBQ9H115 298 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 RIPOR2Q9Y4F9 1068 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 MED23Q9ULK4 1368 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 GLRX3O76003 335 aaKnown RBP8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 VIL1P09327 827 aaKnown RBP8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 IRX3P78415 501 aaPredicted RBP8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 LRP10Q7Z4F1 713 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 CDCA5Q96FF9 252 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 ELP3Q9H9T3 547 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 TSKSQ9UJT2 592 aa8.7□□□□□ -1.02
CDC42BPA-208ENST00000442054 ZSCAN30Q86W11 494 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 RASEFQ8IZ41 740 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 C7orf43Q8WVR3 580 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 WNT10BO00744 389 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 RGMBQ6NW40 437 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 TNS4Q8IZW8 715 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 PRMT6Q96LA8 375 aaPredicted RBP8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 SNX14Q9Y5W7 946 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 DDX49Q9Y6V7 483 aaKnown RBP8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 ST18O60284 1047 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 MCM2P49736 904 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 SREBF2Q12772 1141 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 CAVIN1Q6NZI2 390 aaKnown RBP8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 NDUFB9Q9Y6M9 179 aa8.69□□□□□ -1.02
CDC42BPA-208ENST00000442054 WTIPA6NIX2 430 aaPredicted RBP8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 YDJCA8MPS7 323 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 PLS1Q14651 629 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 RUFY3Q7L099 469 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 ZNF70Q9UC06 446 aaPredicted RBP8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 SLC4A4Q9Y6R1 1079 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 SHTN1A0MZ66 631 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 ERICH2A1L162 156 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 GADD45BO75293 160 aaPredicted RBP8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 TAF1CQ15572 869 aaPredicted RBP8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 DACT2Q5SW24 774 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 ANKRD13AQ8IZ07 590 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 ZNF341Q9BYN7 854 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 PAG1Q9NWQ8 432 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 CCDC85CA6NKD9 419 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 PRPF40AO75400 957 aaKnown RBP8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 FMNL1O95466 1100 aaPredicted RBP8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 PABPC4Q13310 644 aaKnown RBP eCLIP8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 RALYLQ86SE5 291 aaKnown RBP8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 TDRD7Q8NHU6 1098 aaKnown RBP8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 AS3MTQ9HBK9 375 aa8.68□□□□□ -1.02
CDC42BPA-208ENST00000442054 EP400Q96L91 3159 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 RASGRF1Q13972 1273 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 PI16Q6UXB8 463 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 SLC51AQ86UW1 340 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 TRIM75PA6NK02 468 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 NEK4P51957 841 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 RABL6Q3YEC7 729 aaPredicted RBP8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 RTFDC1Q9BY42 306 aaPredicted RBP8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 CREBZFQ9NS37 354 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 IVNS1ABPQ9Y6Y0 642 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 ITGB4P16144 1822 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 RANBP6O60518 1105 aaKnown RBP8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 LARGE1O95461 756 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 MAP3K9P80192 1104 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 FMR1Q06787 632 aaKnown RBP eCLIP8.67□□□□□ -1.022e-6■■■■□ 22.9
CDC42BPA-208ENST00000442054 TMEM39BQ9GZU3 492 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 HMG20BQ9P0W2 317 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 SERPINA10Q9UK55 444 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 ZHX2Q9Y6X8 837 aa8.67□□□□□ -1.02
CDC42BPA-208ENST00000442054 MMP14P50281 582 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 NBPF12Q5TAG4 269 aaPredicted RBP8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 CERS3Q8IU89 383 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 EAF2Q96CJ1 260 aaPredicted RBP8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 PAGR1Q9BTK6 254 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 HSPA1AP0DMV8 641 aaKnown RBP8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 HSPA1BP0DMV9 641 aaKnown RBP8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 CTCFP49711 727 aaPredicted RBP8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 MOB2Q70IA6 237 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 L3MBTL3Q96JM7 780 aaPredicted RBP8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 SUGT1Q9Y2Z0 365 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 SPDYE2BA6NHP3 402 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 MBD4O95243 580 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 SPDYE6P0CI01 402 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 NECTIN1Q15223 517 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 SYNE3Q6ZMZ3 975 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 FBXO33Q7Z6M2 555 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 STX8Q9UNK0 236 aa8.66□□□□□ -1.02
CDC42BPA-208ENST00000442054 CCL15-CCL14A0A0B4J2E2 113 aa8.65□□□□□ -1.02
CDC42BPA-208ENST00000442054 AP5Z1O43299 807 aa8.65□□□□□ -1.02
CDC42BPA-208ENST00000442054 MECOMQ03112 1051 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms