RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 PREPLQ4J6C6 727 aaPredicted RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 LMBRD2Q68DH5 695 aaPredicted RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 KRI1Q8N9T8 703 aaKnown RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 CCDC191Q8NCU4 936 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 STAG1Q8WVM7 1258 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 DHRS1Q96LJ7 313 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 CRACR2AQ9BSW2 395 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 AS3MTQ9HBK9 375 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 CPSF1Q10570 1443 aaKnown RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 FBLN1P23142 703 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 MAP2K2P36507 400 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 KRT72Q14CN4 511 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 PARP10Q53GL7 1025 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 ACBD5Q5T8D3 534 aaPredicted RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 CEP85Q6P2H3 762 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 JDP2Q8WYK2 163 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 CCDC61Q9Y6R9 512 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 ERBB4Q15303 1308 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 KIAA0754O94854 1291 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 ATP2B1P20020 1258 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 NSUN2Q08J23 767 aaKnown RBP eCLIP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 HHATQ5VTY9 493 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 TRIM42Q8IWZ5 723 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 ANKRD20A12PQ8NF67 263 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 CCDC26Q8TAB7 109 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 TMC2Q8TDI7 906 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 RTF1Q92541 710 aaKnown RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 BAG1Q99933 345 aaPredicted RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 DCAF16Q9NXF7 216 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 ASAP1Q9ULH1 1129 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 MAP2P11137 1827 aaKnown RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 KIF13BQ9NQT8 1826 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 PRIM1P49642 420 aaKnown RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 CCT4P50991 539 aaKnown RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 HELQQ8TDG4 1101 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 PIF1Q9H611 641 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 LMBRD1Q9NUN5 540 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 KIAA0232Q92628 1395 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 TRIM66O15016 1216 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 RNASEH2AO75792 299 aaKnown RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 ZNF24P17028 368 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 MCM5P33992 734 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 SLMAPQ14BN4 828 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 ERP27Q96DN0 273 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 CAMKK2Q96RR4 588 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 STK31Q9BXU1 1019 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 XPO4Q9C0E2 1151 aaKnown RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 MORC2Q9Y6X9 1032 aaPredicted RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 ARHGEF10O15013 1369 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 CHL1O00533 1208 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 BIRC3Q13489 604 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 RRS1Q15050 365 aaKnown RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 TTC19Q6DKK2 380 aaPredicted RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 ALKBH2Q6NS38 261 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 CHPFQ8IZ52 775 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 DRAXINQ8NBI3 349 aaPredicted RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 NACC2Q96BF6 587 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 NUDT16Q96DE0 195 aaKnown RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 TACO1Q9BSH4 297 aaKnown RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 PCDH12Q9NPG4 1184 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 ZMAT5Q9UDW3 170 aaKnown RBP7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 CCDC39Q9UFE4 941 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 LZTS1Q9Y250 596 aa7.54□□□□□ -1.2
TM9SF4-202ENST00000398022 FOXO3O43524 673 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 E2F6O75461 281 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 NEK4P51957 841 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 ZBED6P86452 979 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 TAF11Q15544 211 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 SULT6B1Q6IMI4 303 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 PLEKHG4BQ96PX9 1271 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 TANGO6Q9C0B7 1094 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 RBSNQ9H1K0 784 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 SASH1O94885 1247 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 CYP2E1P05181 493 aaPredicted RBP7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 SLC4A10Q6U841 1118 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 DEFB132Q7Z7B7 95 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 CCDC65Q8IXS2 484 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 C16orf71Q8IYS4 520 aaPredicted RBP7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 ZFPM2Q8WW38 1151 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 TBC1D31Q96DN5 1066 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 NGLY1Q96IV0 654 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 SLC39A3Q9BRY0 314 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 TBC1D7Q9P0N9 293 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 BARX2Q9UMQ3 279 aaPredicted RBP7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 BRCA1P38398 1863 aaKnown RBP7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 FOSP01100 380 aaPredicted RBP7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 SLC4A2P04920 1241 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 HARSP12081 509 aaKnown RBP7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 PKN1Q16512 942 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 CCDC158Q5M9N0 1113 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 SAPCD2Q86UD0 394 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 JARID2Q92833 1246 aaPredicted RBP7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 THOC1Q96FV9 657 aaKnown RBP7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 RNPC3Q96LT9 517 aaKnown RBP7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 GSDMAQ96QA5 445 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 KMT5AQ9NQR1 393 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 SEL1LQ9UBV2 794 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 TMEM98Q9Y2Y6 226 aa7.53□□□□□ -1.2
TM9SF4-202ENST00000398022 RTL1A6NKG5 1358 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms