RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 ANKRD24Q8TF21 1146 aa7.11□□□□□ -1.27
USP48-202ENST00000374730 ATXN3LQ9H3M9 355 aa7.11□□□□□ -1.27
USP48-202ENST00000374730 CRIM1Q9NZV1 1036 aa7.11□□□□□ -1.27
USP48-202ENST00000374730 PPP1R9AQ9ULJ8 1098 aa7.11□□□□□ -1.27
USP48-202ENST00000374730 AKAP2Q9Y2D5 859 aa7.11□□□□□ -1.27
USP48-202ENST00000374730 PCDHGC5Q9Y5F6 944 aa7.11□□□□□ -1.27
USP48-202ENST00000374730 CFAP43Q8NDM7 1665 aa7.1□□□□□ -1.27
USP48-202ENST00000374730 ZNF862O60290 1169 aa7.1□□□□□ -1.27
USP48-202ENST00000374730 LIG1P18858 919 aa7.1□□□□□ -1.27
USP48-202ENST00000374730 NME2P22392 152 aa7.1□□□□□ -1.27
USP48-202ENST00000374730 ADMP35318 185 aa7.1□□□□□ -1.27
USP48-202ENST00000374730 ID3Q02535 119 aa7.1□□□□□ -1.27
USP48-202ENST00000374730 SEZ6L2Q6UXD5 910 aa7.1□□□□□ -1.27
USP48-202ENST00000374730 SULF2Q8IWU5 870 aa7.1□□□□□ -1.27
USP48-202ENST00000374730 WDR89Q96FK6 387 aaPredicted RBP7.1□□□□□ -1.27
USP48-202ENST00000374730 EMILIN2Q9BXX0 1053 aa7.1□□□□□ -1.27
USP48-202ENST00000374730 CARMIL1Q5VZK9 1371 aa7.09□□□□□ -1.27
USP48-202ENST00000374730 ABCA5Q8WWZ7 1642 aa7.09□□□□□ -1.27
USP48-202ENST00000374730 ARNTP27540 789 aa7.09□□□□□ -1.27
USP48-202ENST00000374730 CYP27A1Q02318 531 aa7.09□□□□□ -1.27
USP48-202ENST00000374730 MSMPQ1L6U9 139 aa7.09□□□□□ -1.27
USP48-202ENST00000374730 NECAB3Q96P71 396 aaPredicted RBP7.09□□□□□ -1.27
USP48-202ENST00000374730 ZC3H12CQ9C0D7 883 aaKnown RBP7.09□□□□□ -1.27
USP48-202ENST00000374730 CEP44Q9C0F1 390 aa7.09□□□□□ -1.27
USP48-202ENST00000374730 SPG7Q9UQ90 795 aa7.09□□□□□ -1.27
USP48-202ENST00000374730 EFCAB5A4FU69 1503 aa7.09□□□□□ -1.27
USP48-202ENST00000374730 NESP48681 1621 aa7.09□□□□□ -1.28
USP48-202ENST00000374730 HOXA10P31260 410 aaPredicted RBP7.08□□□□□ -1.28
USP48-202ENST00000374730 GP2P55259 537 aaKnown RBP7.08□□□□□ -1.28
USP48-202ENST00000374730 SHISA5Q8N114 240 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 KCNB2Q92953 911 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 FRMD6Q96NE9 622 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 FANCD2OSQ96PS1 177 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 SETDB2Q96T68 719 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 OSBPL7Q9BZF2 842 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 PIDD1Q9HB75 910 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 DAGLAQ9Y4D2 1042 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 KIF21AQ7Z4S6 1674 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 RRBP1Q9P2E9 1410 aaKnown RBP7.08□□□□□ -1.28
USP48-202ENST00000374730 TIAM1Q13009 1591 aa7.08□□□□□ -1.28
USP48-202ENST00000374730 URB2Q14146 1524 aaKnown RBP7.07□□□□□ -1.28
USP48-202ENST00000374730 TTBK1Q5TCY1 1321 aaPredicted RBP7.07□□□□□ -1.28
USP48-202ENST00000374730 FAM170BA6NMN3 283 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 WNT11O96014 354 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 P4HBP07237 508 aaKnown RBP7.07□□□□□ -1.28
USP48-202ENST00000374730 RANGAP1P46060 587 aaPredicted RBP7.07□□□□□ -1.28
USP48-202ENST00000374730 ZNF252P-AS1Q0IIN9 211 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 COL19A1Q14993 1142 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 DUSP27Q5VZP5 1158 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 STK35Q8TDR2 534 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 KRTAP4-8Q9BYQ9 185 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 C12orf49Q9H741 205 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 C1GALT1Q9NS00 363 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 CACNA2D2Q9NY47 1150 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 FAM8A1Q9UBU6 413 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 WWC3Q9ULE0 1092 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 SAMM50Q9Y512 469 aa7.07□□□□□ -1.28
USP48-202ENST00000374730 RAD54L2Q9Y4B4 1467 aa7.06□□□□□ -1.28
USP48-202ENST00000374730 ENC1O14682 589 aa7.06□□□□□ -1.28
USP48-202ENST00000374730 CYP26A1O43174 497 aa7.06□□□□□ -1.28
USP48-202ENST00000374730 PRNPP04156 253 aa7.06□□□□□ -1.28
USP48-202ENST00000374730 SCARA3Q6AZY7 606 aa7.06□□□□□ -1.28
USP48-202ENST00000374730 SND1Q7KZF4 910 aaKnown RBP eCLIP7.06□□□□□ -1.28
USP48-202ENST00000374730 PSMG3-AS1Q96PY0 264 aa7.06□□□□□ -1.28
USP48-202ENST00000374730 DISC1Q9NRI5 854 aa7.06□□□□□ -1.28
USP48-202ENST00000374730 PODXL2Q9NZ53 605 aa7.06□□□□□ -1.28
USP48-202ENST00000374730 PDS5BQ9NTI5 1447 aa7.06□□□□□ -1.28
USP48-202ENST00000374730 FHAD1B1AJZ9 1412 aa7.05□□□□□ -1.28
USP48-202ENST00000374730 DYNC1LI2O43237 492 aaPredicted RBP7.05□□□□□ -1.28
USP48-202ENST00000374730 ADAMTS4O75173 837 aa7.05□□□□□ -1.28
USP48-202ENST00000374730 LDHBP07195 334 aaKnown RBP7.05□□□□□ -1.28
USP48-202ENST00000374730 FGD1P98174 961 aa7.05□□□□□ -1.28
USP48-202ENST00000374730 OGFOD3Q6PK18 319 aa7.05□□□□□ -1.28
USP48-202ENST00000374730 TPTE2Q6XPS3 522 aa7.05□□□□□ -1.28
USP48-202ENST00000374730 ZNF765Q7L2R6 523 aa7.05□□□□□ -1.28
USP48-202ENST00000374730 VSIG10LQ86VR7 867 aa7.05□□□□□ -1.28
USP48-202ENST00000374730 SMYD4Q8IYR2 804 aaPredicted RBP7.05□□□□□ -1.28
USP48-202ENST00000374730 OAS3Q9Y6K5 1087 aaKnown RBP7.05□□□□□ -1.28
USP48-202ENST00000374730 PCF11O94913 1555 aaKnown RBP7.04□□□□□ -1.28
USP48-202ENST00000374730 ERVK-24P63145 666 aa7.04□□□□□ -1.28
USP48-202ENST00000374730 TTLL4Q14679 1199 aa7.04□□□□□ -1.28
USP48-202ENST00000374730 ZC3H12AQ5D1E8 599 aaKnown RBP7.04□□□□□ -1.28
USP48-202ENST00000374730 MAP1SQ66K74 1059 aaPredicted RBP7.04□□□□□ -1.28
USP48-202ENST00000374730 MCTP1Q6DN14 999 aa7.04□□□□□ -1.28
USP48-202ENST00000374730 GPBAR1Q8TDU6 330 aa7.04□□□□□ -1.28
USP48-202ENST00000374730 TARBP1Q13395 1621 aaKnown RBP7.04□□□□□ -1.28
USP48-202ENST00000374730 AQRO60306 1485 aaKnown RBP eCLIP7.04□□□□□ -1.282e-8■■□□□ 13.9
USP48-202ENST00000374730 SAMD9Q5K651 1589 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 PRPF40AO75400 957 aaKnown RBP7.03□□□□□ -1.28
USP48-202ENST00000374730 TRIM37O94972 964 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 USP17L7P0C7H9 530 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 BMP6P22004 513 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 GNA15P30679 374 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 IRAK1P51617 712 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 LRRC14Q15048 493 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 CYP27C1Q4G0S4 372 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 CBX8Q9HC52 389 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 BSDC1Q9NW68 430 aaPredicted RBP7.03□□□□□ -1.28
USP48-202ENST00000374730 ANGEL1Q9UNK9 670 aaKnown RBP7.03□□□□□ -1.28
USP48-202ENST00000374730 FYCO1Q9BQS8 1478 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms