RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 SETDB1Q15047 1291 aa6.05□□□□□ -1.44
CD44-202ENST00000278385 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.05□□□□□ -1.44
CD44-202ENST00000278385 PEAR1Q5VY43 1037 aaPredicted RBP6.05□□□□□ -1.44
CD44-202ENST00000278385 METTL16Q86W50 562 aaKnown RBP6.05□□□□□ -1.44
CD44-202ENST00000278385 NT5DC4Q86YG4 428 aa6.05□□□□□ -1.44
CD44-202ENST00000278385 GPATCH11Q8N954 259 aa6.05□□□□□ -1.44
CD44-202ENST00000278385 EPS8L3Q8TE67 593 aaKnown RBP6.05□□□□□ -1.44
CD44-202ENST00000278385 EVI5LQ96CN4 794 aa6.05□□□□□ -1.44
CD44-202ENST00000278385 NAP1L5Q96NT1 182 aaPredicted RBP6.05□□□□□ -1.44
CD44-202ENST00000278385 SRCIN1Q9C0H9 1055 aa6.05□□□□□ -1.44
CD44-202ENST00000278385 FHOD3Q2V2M9 1422 aa6.05□□□□□ -1.44
CD44-202ENST00000278385 MAGI3Q5TCQ9 1506 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 U2SURPO15042 1029 aaKnown RBP6.04□□□□□ -1.44
CD44-202ENST00000278385 SART1O43290 800 aaKnown RBP6.04□□□□□ -1.44
CD44-202ENST00000278385 CYP11A1P05108 521 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 HSD3B2P26439 372 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 GSTM4Q03013 218 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 PTPN12Q05209 780 aaKnown RBP6.04□□□□□ -1.44
CD44-202ENST00000278385 FMR1Q06787 632 aaKnown RBP eCLIP6.04□□□□□ -1.44
CD44-202ENST00000278385 PCDH1Q08174 1060 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 RNF187Q5TA31 235 aaPredicted RBP6.04□□□□□ -1.44
CD44-202ENST00000278385 ZNF746Q6NUN9 644 aaPredicted RBP6.04□□□□□ -1.44
CD44-202ENST00000278385 CD163Q86VB7 1156 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 HHIPQ96QV1 700 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 GMLQ99445 158 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 SPOCK3Q9BQ16 436 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 CARD10Q9BWT7 1032 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 ZSWIM4Q9H7M6 989 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 AKTIPQ9H8T0 292 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 SOX13Q9UN79 622 aa6.04□□□□□ -1.44
CD44-202ENST00000278385 KDM6BO15054 1643 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 KIF21BO75037 1637 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 ZCCHC11Q5TAX3 1644 aaKnown RBP6.03□□□□□ -1.44
CD44-202ENST00000278385 SAMD9Q5K651 1589 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 TMEM238LA0A1B0GVL6 79 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 DLL1O00548 723 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 DEAF1O75398 565 aaPredicted RBP6.03□□□□□ -1.44
CD44-202ENST00000278385 PRPF40AO75400 957 aaKnown RBP6.03□□□□□ -1.44
CD44-202ENST00000278385 GSTT1P30711 240 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 FCGRTP55899 365 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 FOXD4L6Q3SYB3 417 aaPredicted RBP6.03□□□□□ -1.44
CD44-202ENST00000278385 FOXD4L3Q6VB84 417 aaPredicted RBP6.03□□□□□ -1.44
CD44-202ENST00000278385 ACAD11Q709F0 780 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 TXNRD3Q86VQ6 643 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 BCO2Q9BYV7 579 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 CEP41Q9BYV8 373 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 TGIF2Q9GZN2 237 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 SOX17Q9H6I2 414 aaPredicted RBP6.03□□□□□ -1.44
CD44-202ENST00000278385 AKAP2Q9Y2D5 859 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 SAMM50Q9Y512 469 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 COL4A3BPQ9Y5P4 624 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.03□□□□□ -1.44
CD44-202ENST00000278385 EFCAB5A4FU69 1503 aa6.03□□□□□ -1.44
CD44-202ENST00000278385 COL17A1Q9UMD9 1497 aaPredicted RBP6.02□□□□□ -1.44
CD44-202ENST00000278385 FMN1Q68DA7 1419 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 METTL12A8MUP2 240 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 IGHA2P01877 340 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 SELPP16109 830 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 GLB1P16278 677 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 NLRP12P59046 1061 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 PLEKHG6Q3KR16 790 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 LONRF3Q496Y0 759 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 RPS26P11Q5JNZ5 115 aaPredicted RBP6.02□□□□□ -1.45
CD44-202ENST00000278385 SOGA3Q5TF21 947 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 DIEXFQ68CQ4 756 aaKnown RBP6.02□□□□□ -1.45
CD44-202ENST00000278385 PRPF40BQ6NWY9 871 aaKnown RBP6.02□□□□□ -1.45
CD44-202ENST00000278385 SHISA2Q6UWI4 295 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 JAZF1Q86VZ6 243 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 CCAR1Q8IX12 1150 aaKnown RBP6.02□□□□□ -1.45
CD44-202ENST00000278385 PMFBP1Q8TBY8 1022 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 KLHDC7BQ96G42 594 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 TCF12Q99081 682 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 CORO1BQ9BR76 489 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 USP26Q9BXU7 913 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 IRF2BPLQ9H1B7 796 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 CAPN10Q9HC96 672 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 MRS2Q9HD23 443 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 GABBR1Q9UBS5 961 aa6.02□□□□□ -1.45
CD44-202ENST00000278385 GPN3Q9UHW5 284 aaPredicted RBP6.02□□□□□ -1.45
CD44-202ENST00000278385 NUP153P49790 1475 aaKnown RBP6.02□□□□□ -1.45
CD44-202ENST00000278385 P4HBP07237 508 aaKnown RBP6.01□□□□□ -1.45
CD44-202ENST00000278385 ESRRAP11474 423 aaPredicted RBP6.01□□□□□ -1.45
CD44-202ENST00000278385 EIF4BP23588 611 aaKnown RBP6.01□□□□□ -1.45
CD44-202ENST00000278385 CHRNA4P43681 627 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 GRIA4P48058 902 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 IREB2P48200 963 aaKnown RBP6.01□□□□□ -1.45
CD44-202ENST00000278385 GSK3AP49840 483 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 ADGRE1Q14246 886 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 GRM2Q14416 872 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 MBTPS1Q14703 1052 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 SPRED3Q2MJR0 410 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 FDX2Q6P4F2 183 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 NXPE4Q6UWF7 544 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 VN1R5Q7Z5H4 357 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 TMEM130Q8N3G9 435 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 WFDC12Q8WWY7 111 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 RUSC1Q9BVN2 902 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 CEP44Q9C0F1 390 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 MAF1Q9H063 256 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 CCSER2Q9H7U1 834 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms