RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	CPS1	P27614	576 aa		7.44	□□□□□ -1.22
NUP1	YOR098C	ERG12	P07277	443 aa		7.44	□□□□□ -1.22
NUP1	YOR098C	BBC1	P47068	1157 aa		7.44	□□□□□ -1.22
NUP1	YOR098C	COQ8	P27697	501 aa		7.43	□□□□□ -1.22
NUP1	YOR098C	SPC42	P36094	363 aa		7.43	□□□□□ -1.22
NUP1	YOR098C	CDC3	P32457	520 aa	Known RBP	7.42	□□□□□ -1.22
NUP1	YOR098C	HEM3	P28789	327 aa		7.42	□□□□□ -1.22
NUP1	YOR098C	RPL34A	P87262	121 aa	Predicted RBP	7.41	□□□□□ -1.22
NUP1	YOR098C	NOB1	Q08444	459 aa	Known RBP	7.41	□□□□□ -1.22
NUP1	YOR098C	ATG36	P46983	293 aa		7.41	□□□□□ -1.22
NUP1	YOR098C	FAR11	P53917	953 aa		7.41	□□□□□ -1.22
NUP1	YOR098C	YRB30	P53107	440 aa	Predicted RBP	7.4	□□□□□ -1.22
NUP1	YOR098C	RTG3	P38165	486 aa		7.4	□□□□□ -1.23
NUP1	YOR098C	OCA5	P38738	679 aa		7.4	□□□□□ -1.23
NUP1	YOR098C	LAM6	Q08001	693 aa		7.39	□□□□□ -1.23
NUP1	YOR098C	COX6	P00427	148 aa		7.39	□□□□□ -1.23
NUP1	YOR098C	TIF1	P10081	395 aa	Known RBP	7.39	□□□□□ -1.23
NUP1	YOR098C	SSA2	P10592	639 aa	Known RBP	7.38	□□□□□ -1.23
NUP1	YOR098C	TTI1	P36097	1038 aa		7.37	□□□□□ -1.23
NUP1	YOR098C	DOS2	P54858	310 aa		7.37	□□□□□ -1.23
NUP1	YOR098C	RPL34B	P40525	121 aa	Known RBP	7.36	□□□□□ -1.23
NUP1	YOR098C	CSN12	P47130	423 aa		7.35	□□□□□ -1.23
NUP1	YOR098C	BCH2	P36122	765 aa		7.35	□□□□□ -1.23
NUP1	YOR098C	NUG1	P40010	520 aa	Known RBP	7.35	□□□□□ -1.23
NUP1	YOR098C	HAT1	Q12341	374 aa		7.35	□□□□□ -1.23
NUP1	YOR098C	YPR204W	Q08995	1032 aa		7.34	□□□□□ -1.23
NUP1	YOR098C	YML083C	Q04526	418 aa		7.33	□□□□□ -1.24
NUP1	YOR098C	SWE1	P32944	819 aa		7.32	□□□□□ -1.24
NUP1	YOR098C	NOP53	Q12080	455 aa	Known RBP	7.32	□□□□□ -1.24
NUP1	YOR098C	ITT1	Q04638	464 aa		7.31	□□□□□ -1.24
NUP1	YOR098C	ALD4	P46367	519 aa	Known RBP	7.31	□□□□□ -1.24
NUP1	YOR098C	BIO2	P32451	375 aa		7.3	□□□□□ -1.24
NUP1	YOR098C	EDS1	P38073	919 aa		7.3	□□□□□ -1.24
NUP1	YOR098C	YJR008W	P47085	338 aa		7.3	□□□□□ -1.24
NUP1	YOR098C	KTR1	P27810	393 aa	Known RBP	7.29	□□□□□ -1.24
NUP1	YOR098C	RTS3	P53289	263 aa		7.29	□□□□□ -1.24
NUP1	YOR098C	IPL1	P38991	367 aa		7.29	□□□□□ -1.24
NUP1	YOR098C	EPS1	P40557	701 aa		7.29	□□□□□ -1.24
NUP1	YOR098C	FAP1	P53971	965 aa		7.29	□□□□□ -1.24
NUP1	YOR098C	RTG2	P32608	588 aa	Known RBP	7.28	□□□□□ -1.24
NUP1	YOR098C	UBP14	P38237	781 aa	Known RBP	7.28	□□□□□ -1.24
NUP1	YOR098C	ALD2	P47771	506 aa		7.28	□□□□□ -1.24
NUP1	YOR098C	VPS29	P38759	282 aa		7.27	□□□□□ -1.24
NUP1	YOR098C	PUP1	P25043	261 aa		7.27	□□□□□ -1.25
NUP1	YOR098C	MIF2	P35201	549 aa		7.27	□□□□□ -1.25
NUP1	YOR098C	YBL036C	P38197	257 aa		7.25	□□□□□ -1.25
NUP1	YOR098C	YAF9	P53930	226 aa		7.25	□□□□□ -1.25
NUP1	YOR098C	FPR4	Q06205	392 aa	Predicted RBP	7.25	□□□□□ -1.25
NUP1	YOR098C	CDC27	P38042	758 aa		7.24	□□□□□ -1.25
NUP1	YOR098C	YDR090C	Q03193	310 aa		7.24	□□□□□ -1.25
NUP1	YOR098C	ASF1	P32447	279 aa		7.23	□□□□□ -1.25
NUP1	YOR098C	CST6	P40535	587 aa		7.23	□□□□□ -1.25
NUP1	YOR098C	TYW1	Q08960	810 aa	Known RBP	7.23	□□□□□ -1.25
NUP1	YOR098C	YNL108C	P53929	270 aa		7.22	□□□□□ -1.25
NUP1	YOR098C	KEX1	P09620	729 aa		7.21	□□□□□ -1.26
NUP1	YOR098C	BDF1	P35817	686 aa		7.21	□□□□□ -1.26
NUP1	YOR098C	NMD2	P38798	1089 aa	Known RBP	7.21	□□□□□ -1.26
NUP1	YOR098C	RRP15	Q06511	250 aa	Predicted RBP	7.21	□□□□□ -1.26
NUP1	YOR098C	STM1	P39015	273 aa	Known RBP	7.21	□□□□□ -1.26
NUP1	YOR098C	SUB1	P54000	292 aa	Known RBP	7.21	□□□□□ -1.26
NUP1	YOR098C	NNF1	P47149	201 aa		7.2	□□□□□ -1.26
NUP1	YOR098C	VHR2	P40041	505 aa		7.2	□□□□□ -1.26
NUP1	YOR098C	PSE1	P32337	1089 aa	Known RBP	7.18	□□□□□ -1.26
NUP1	YOR098C	YBL113C	Q7M4S9	792 aa		7.18	□□□□□ -1.26
NUP1	YOR098C	ATE1	P16639	503 aa		7.18	□□□□□ -1.26
NUP1	YOR098C	VPS72	Q03388	795 aa		7.17	□□□□□ -1.26
NUP1	YOR098C	SEC20	P28791	383 aa		7.16	□□□□□ -1.26
NUP1	YOR098C	STS1	P38637	319 aa		7.16	□□□□□ -1.26
NUP1	YOR098C	RNH70	P53331	553 aa		7.16	□□□□□ -1.26
NUP1	YOR098C	SPA2	P23201	1466 aa	Known RBP	7.16	□□□□□ -1.26
NUP1	YOR098C	SGS1	P35187	1447 aa		7.16	□□□□□ -1.26
NUP1	YOR098C	ENO1	P00924	437 aa	Known RBP	7.16	□□□□□ -1.26
NUP1	YOR098C	UBX5	Q06682	500 aa		7.15	□□□□□ -1.26
NUP1	YOR098C	SUP45	P12385	437 aa	Known RBP	7.15	□□□□□ -1.27
NUP1	YOR098C	TPO2	P53283	614 aa		7.15	□□□□□ -1.27
NUP1	YOR098C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	7.14	□□□□□ -1.27	not detected
NUP1	YOR098C	PTC3	P34221	468 aa	Known RBP	7.14	□□□□□ -1.27
NUP1	YOR098C	ERP5	P38819	212 aa		7.14	□□□□□ -1.27
NUP1	YOR098C	MSC6	Q08818	692 aa	Known RBP	7.14	□□□□□ -1.27
NUP1	YOR098C	MRPL32	P25348	183 aa		7.13	□□□□□ -1.27
NUP1	YOR098C	TGL4	P36165	910 aa		7.13	□□□□□ -1.27
NUP1	YOR098C	POL32	P47110	350 aa		7.13	□□□□□ -1.27
NUP1	YOR098C	OSW7	P43611	510 aa		7.12	□□□□□ -1.27
NUP1	YOR098C	BUD21	Q08492	214 aa	Predicted RBP	7.12	□□□□□ -1.27
NUP1	YOR098C	YLR326W	Q06170	240 aa	Known RBP	7.12	□□□□□ -1.27
NUP1	YOR098C	TEA1	P47988	759 aa		7.12	□□□□□ -1.27
NUP1	YOR098C	MRX10	Q05648	414 aa		7.12	□□□□□ -1.27
NUP1	YOR098C	ENO2	P00925	437 aa	Known RBP	7.11	□□□□□ -1.27
NUP1	YOR098C	YOL098C	Q12496	1037 aa		7.11	□□□□□ -1.27
NUP1	YOR098C	MAG2	Q06436	670 aa	Known RBP	7.11	□□□□□ -1.27
NUP1	YOR098C	RAD59	Q12223	238 aa		7.11	□□□□□ -1.27
NUP1	YOR098C	SVF1	Q05515	481 aa		7.1	□□□□□ -1.27
NUP1	YOR098C	TOM20	P35180	183 aa		7.1	□□□□□ -1.27
NUP1	YOR098C	SIS2	P36024	562 aa		7.1	□□□□□ -1.27
NUP1	YOR098C	GIN4	Q12263	1142 aa		7.1	□□□□□ -1.27
NUP1	YOR098C	CSE4	P36012	229 aa		7.09	□□□□□ -1.27
NUP1	YOR098C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	7.09	□□□□□ -1.27	not detected
NUP1	YOR098C	YHL050C	P38721	697 aa		7.09	□□□□□ -1.27
NUP1	YOR098C	YHR219W	P38900	624 aa		7.09	□□□□□ -1.27
NUP1	YOR098C	YFR006W	P43590	535 aa		7.09	□□□□□ -1.27

Retrieved 100 of 5,963 RNA–protein pairs in 38.4 ms