RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeastyeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SOF1YLL011W MIF2P35201 549 aa6.45□□□□□ -1.38
SOF1YLL011W BIM1P40013 344 aa6.45□□□□□ -1.38
SOF1YLL011W MAP2P38174 421 aaKnown RBP6.44□□□□□ -1.38
SOF1YLL011W VPS29P38759 282 aa6.44□□□□□ -1.38
SOF1YLL011W YJL007CP47080 104 aa6.44□□□□□ -1.38
SOF1YLL011W NOP7P53261 605 aaKnown RBP6.44□□□□□ -1.38
SOF1YLL011W NOP53Q12080 455 aaKnown RBP6.44□□□□□ -1.38
SOF1YLL011W INO80P53115 1489 aa6.43□□□□□ -1.38
SOF1YLL011W ATG32P40458 529 aa6.43□□□□□ -1.38
SOF1YLL011W MON2P48563 1636 aaPredicted RBP6.42□□□□□ -1.38
SOF1YLL011W GLN1P32288 370 aaKnown RBP6.42□□□□□ -1.38
SOF1YLL011W EDS1P38073 919 aa6.42□□□□□ -1.38
SOF1YLL011W SSA4P22202 642 aaKnown RBP6.41□□□□□ -1.38
SOF1YLL011W MRX12P47084 519 aa6.41□□□□□ -1.38
SOF1YLL011W SSA2P10592 639 aaKnown RBP6.4□□□□□ -1.39
SOF1YLL011W CSN12P47130 423 aa6.38□□□□□ -1.39
SOF1YLL011W CPS1P27614 576 aa6.37□□□□□ -1.39
SOF1YLL011W SLD2P34252 453 aa6.37□□□□□ -1.39
SOF1YLL011W ERG12P07277 443 aa6.36□□□□□ -1.39
SOF1YLL011W RPL34BP40525 121 aaKnown RBP6.36□□□□□ -1.39
SOF1YLL011W SNU71P53207 620 aaKnown RBP6.36□□□□□ -1.39
SOF1YLL011W UBP10P53874 792 aaPredicted RBP6.36□□□□□ -1.39
SOF1YLL011W TIF1P10081 395 aaKnown RBP6.34□□□□□ -1.39
SOF1YLL011W UBP14P38237 781 aaKnown RBP6.34□□□□□ -1.39
SOF1YLL011W STS1P38637 319 aa6.34□□□□□ -1.39
SOF1YLL011W RPL34AP87262 121 aaPredicted RBP6.34□□□□□ -1.39
SOF1YLL011W VHR2P40041 505 aa6.34□□□□□ -1.4
SOF1YLL011W YMR1P47147 688 aaKnown RBP RIP-Chip data6.33□□□□□ -1.4not detected
SOF1YLL011W MET10P39692 1035 aa6.32□□□□□ -1.4
SOF1YLL011W YFR006WP43590 535 aa6.32□□□□□ -1.4
SOF1YLL011W YDR090CQ03193 310 aa6.32□□□□□ -1.4
SOF1YLL011W YPR204WQ08995 1032 aa6.32□□□□□ -1.4
SOF1YLL011W CDC3P32457 520 aaKnown RBP6.31□□□□□ -1.4
SOF1YLL011W PTC3P34221 468 aaKnown RBP6.31□□□□□ -1.4
SOF1YLL011W SCY1P53009 804 aa6.31□□□□□ -1.4
SOF1YLL011W PAM1P37304 830 aaKnown RBP6.3□□□□□ -1.4
SOF1YLL011W NOB1Q08444 459 aaKnown RBP6.3□□□□□ -1.4
SOF1YLL011W KTR1P27810 393 aaKnown RBP6.29□□□□□ -1.4
SOF1YLL011W RRN6P32786 894 aa6.29□□□□□ -1.4
SOF1YLL011W TTI1P36097 1038 aa6.29□□□□□ -1.4
SOF1YLL011W SSF1P38789 453 aaPredicted RBP6.29□□□□□ -1.4
SOF1YLL011W DBP1P24784 617 aaKnown RBP6.28□□□□□ -1.4
SOF1YLL011W YBL036CP38197 257 aa6.28□□□□□ -1.4
SOF1YLL011W PSE1P32337 1089 aaKnown RBP6.28□□□□□ -1.4
SOF1YLL011W BIO2P32451 375 aa6.28□□□□□ -1.4
SOF1YLL011W TYW1Q08960 810 aaKnown RBP6.28□□□□□ -1.4
SOF1YLL011W RTG2P32608 588 aaKnown RBP6.27□□□□□ -1.41
SOF1YLL011W SEN54Q02825 467 aaPredicted RBP6.27□□□□□ -1.41
SOF1YLL011W HEM3P28789 327 aa6.26□□□□□ -1.41
SOF1YLL011W KIC1P38692 1080 aa6.26□□□□□ -1.41
SOF1YLL011W YML083CQ04526 418 aa6.25□□□□□ -1.41
SOF1YLL011W YLR326WQ06170 240 aaKnown RBP6.25□□□□□ -1.41
SOF1YLL011W HAT1Q12341 374 aa6.24□□□□□ -1.41
SOF1YLL011W YNL108CP53929 270 aa6.23□□□□□ -1.41
SOF1YLL011W TEA1P47988 759 aa6.22□□□□□ -1.41
SOF1YLL011W PUP1P25043 261 aa6.2□□□□□ -1.42
SOF1YLL011W RAD54P32863 898 aa6.19□□□□□ -1.42
SOF1YLL011W YOR238WQ08634 303 aa6.19□□□□□ -1.42
SOF1YLL011W YTA7P40340 1379 aa6.19□□□□□ -1.42
SOF1YLL011W PCS60P38137 543 aaKnown RBP RIP-Chip data6.18□□□□□ -1.42 RIP-Chip
SOF1YLL011W ATH1P48016 1211 aa6.17□□□□□ -1.42
SOF1YLL011W ORC6P38826 435 aa6.16□□□□□ -1.42
SOF1YLL011W IPL1P38991 367 aa6.16□□□□□ -1.42
SOF1YLL011W TIF4632P39936 914 aaKnown RBP6.16□□□□□ -1.42
SOF1YLL011W PKH3Q03306 898 aaPredicted RBP6.16□□□□□ -1.42
SOF1YLL011W ITT1Q04638 464 aa6.16□□□□□ -1.42
SOF1YLL011W RAD59Q12223 238 aa6.16□□□□□ -1.42
SOF1YLL011W ENO1P00924 437 aaKnown RBP6.15□□□□□ -1.42
SOF1YLL011W KEX1P09620 729 aa6.15□□□□□ -1.43
SOF1YLL011W SUP45P12385 437 aaKnown RBP6.15□□□□□ -1.43
SOF1YLL011W BRN1P38170 754 aa6.15□□□□□ -1.43
SOF1YLL011W YGR273CP53329 174 aa6.15□□□□□ -1.43
SOF1YLL011W ENO2P00925 437 aaKnown RBP6.14□□□□□ -1.43
SOF1YLL011W CSE4P36012 229 aa6.14□□□□□ -1.43
SOF1YLL011W ESS1P22696 170 aa6.13□□□□□ -1.43
SOF1YLL011W GUT1P32190 709 aa6.13□□□□□ -1.43
SOF1YLL011W TGL3P40308 642 aa6.13□□□□□ -1.43
SOF1YLL011W NIS1P53939 407 aa6.13□□□□□ -1.43
SOF1YLL011W YMR196WQ04336 1088 aa6.13□□□□□ -1.43
SOF1YLL011W PIB1Q06651 286 aa6.13□□□□□ -1.43
SOF1YLL011W GRE2Q12068 342 aaKnown RBP6.13□□□□□ -1.43
SOF1YLL011W RGR1P19263 1082 aa6.12□□□□□ -1.43
SOF1YLL011W ASF1P32447 279 aa6.12□□□□□ -1.43
SOF1YLL011W SIS2P36024 562 aa6.12□□□□□ -1.43
SOF1YLL011W TGL4P36165 910 aa6.12□□□□□ -1.43
SOF1YLL011W OCA5P38738 679 aa6.12□□□□□ -1.43
SOF1YLL011W STM1P39015 273 aaKnown RBP6.12□□□□□ -1.43
SOF1YLL011W ALD2P47771 506 aa6.12□□□□□ -1.43
SOF1YLL011W HST2P53686 357 aa6.12□□□□□ -1.43
SOF1YLL011W FPK1P53739 893 aa6.12□□□□□ -1.43
SOF1YLL011W DNA2P38859 1522 aa6.11□□□□□ -1.43
SOF1YLL011W SCJ1P25303 377 aa6.11□□□□□ -1.43
SOF1YLL011W YDJ1P25491 409 aaKnown RBP6.11□□□□□ -1.43
SOF1YLL011W MMP1Q12372 583 aa6.11□□□□□ -1.43
SOF1YLL011W VMA1P17255 1071 aaKnown RBP6.1□□□□□ -1.43
SOF1YLL011W SLX5P32828 619 aaKnown RBP6.1□□□□□ -1.43
SOF1YLL011W MRX10Q05648 414 aa6.1□□□□□ -1.43
SOF1YLL011W YBL113CQ7M4S9 792 aa6.1□□□□□ -1.43
SOF1YLL011W YJU3P28321 313 aa6.09□□□□□ -1.43
SOF1YLL011W CLB5P30283 435 aa6.09□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 26.7 ms