RNA–Protein interactions for RNA: ENST00000611132.4

VPS36-207, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 1 (best) BASIC

Gene VPS36, Length 4,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-207ENST00000611132 CHIC2Q9UKJ5 165 aa19.74■□□□□ 0.75
VPS36-207ENST00000611132 MTUS2Q5JR59 1369 aa19.72■□□□□ 0.75
VPS36-207ENST00000611132 ARID3CA6NKF2 412 aa19.72■□□□□ 0.75
VPS36-207ENST00000611132 KANK4Q5T7N3 995 aaPredicted RBP19.69■□□□□ 0.74
VPS36-207ENST00000611132 NOP58Q9Y2X3 529 aaKnown RBP19.68■□□□□ 0.74
VPS36-207ENST00000611132 KIF27Q86VH2 1401 aa19.67■□□□□ 0.74
VPS36-207ENST00000611132 WIZO95785 1651 aa19.67■□□□□ 0.74
VPS36-207ENST00000611132 SALL2Q9Y467 1007 aaPredicted RBP19.67■□□□□ 0.74
VPS36-207ENST00000611132 SLC4A1APQ9BWU0 796 aaKnown RBP19.65■□□□□ 0.74
VPS36-207ENST00000611132 DHX57Q6P158 1386 aaKnown RBP19.64■□□□□ 0.73
VPS36-207ENST00000611132 B4GALNT3Q6L9W6 998 aa19.63■□□□□ 0.73
VPS36-207ENST00000611132 CANXP27824 592 aaKnown RBP19.62■□□□□ 0.73
VPS36-207ENST00000611132 SETD5Q9C0A6 1442 aa19.62■□□□□ 0.73
VPS36-207ENST00000611132 DEKP35659 375 aaKnown RBP19.61■□□□□ 0.73
VPS36-207ENST00000611132 RRP7BPQ9NSQ0 103 aa19.61■□□□□ 0.73
VPS36-207ENST00000611132 KCNH8Q96L42 1107 aa19.6■□□□□ 0.73
VPS36-207ENST00000611132 RAB3GAP2Q9H2M9 1393 aa19.59■□□□□ 0.73
VPS36-207ENST00000611132 ERICH6BQ5W0A0 696 aa19.58■□□□□ 0.73
VPS36-207ENST00000611132 ZNF777Q9ULD5 760 aaPredicted RBP19.58■□□□□ 0.72
VPS36-207ENST00000611132 BAZ1BQ9UIG0 1483 aaKnown RBP19.57■□□□□ 0.72
VPS36-207ENST00000611132 TOP2AP11388 1531 aaKnown RBP19.54■□□□□ 0.72
VPS36-207ENST00000611132 RUSC2Q8N2Y8 1516 aa19.54■□□□□ 0.72
VPS36-207ENST00000611132 DDRGK1Q96HY6 314 aa19.52■□□□□ 0.71
VPS36-207ENST00000611132 PPM1GO15355 546 aaPredicted RBP19.5■□□□□ 0.71
VPS36-207ENST00000611132 PPP1R15AO75807 674 aaPredicted RBP19.5■□□□□ 0.71
VPS36-207ENST00000611132 FHAD1B1AJZ9 1412 aa19.47■□□□□ 0.71
VPS36-207ENST00000611132 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.47■□□□□ 0.71
VPS36-207ENST00000611132 SENP3-EIF4A1A0A087X0R7 540 aa19.46■□□□□ 0.71
VPS36-207ENST00000611132 UPF2Q9HAU5 1272 aaKnown RBP19.45■□□□□ 0.7
VPS36-207ENST00000611132 RAPGEF2Q9Y4G8 1499 aa19.45■□□□□ 0.7
VPS36-207ENST00000611132 NEFMP07197 916 aa19.45■□□□□ 0.7
VPS36-207ENST00000611132 LAS1LQ9Y4W2 734 aaKnown RBP19.44■□□□□ 0.7
VPS36-207ENST00000611132 GLIPR1L2Q4G1C9 344 aa19.42■□□□□ 0.7
VPS36-207ENST00000611132 RTN4Q9NQC3 1192 aaKnown RBP19.42■□□□□ 0.7
VPS36-207ENST00000611132 HSPA5P11021 654 aaKnown RBP19.41■□□□□ 0.7
VPS36-207ENST00000611132 KDM2AQ9Y2K7 1162 aa19.41■□□□□ 0.7
VPS36-207ENST00000611132 FANCIQ9NVI1 1328 aa19.37■□□□□ 0.69
VPS36-207ENST00000611132 WDR43Q15061 677 aaKnown RBP eCLIP19.36■□□□□ 0.69
VPS36-207ENST00000611132 FBLN2P98095 1184 aa19.34■□□□□ 0.69
VPS36-207ENST00000611132 CARMIL1Q5VZK9 1371 aa19.34■□□□□ 0.69
VPS36-207ENST00000611132 ARHGAP35Q9NRY4 1499 aa19.33■□□□□ 0.69
VPS36-207ENST00000611132 ARXQ96QS3 562 aa19.31■□□□□ 0.68
VPS36-207ENST00000611132 CUX2O14529 1486 aa19.29■□□□□ 0.68
VPS36-207ENST00000611132 ANP32BQ92688 251 aaKnown RBP19.28■□□□□ 0.68
VPS36-207ENST00000611132 IPO9Q96P70 1041 aaKnown RBP19.28■□□□□ 0.68
VPS36-207ENST00000611132 BECN1Q14457 450 aa19.27■□□□□ 0.67
VPS36-207ENST00000611132 TSPY4P0CV99 314 aa19.26■□□□□ 0.67
VPS36-207ENST00000611132 TSPY10P0CW01 314 aa19.26■□□□□ 0.67
VPS36-207ENST00000611132 CARD11Q9BXL7 1154 aa19.26■□□□□ 0.67
VPS36-207ENST00000611132 HSP90AA1P07900 732 aaKnown RBP19.25■□□□□ 0.67
VPS36-207ENST00000611132 SMARCA4P51532 1647 aa19.22■□□□□ 0.67
VPS36-207ENST00000611132 SMARCA2P51531 1590 aa19.21■□□□□ 0.67
VPS36-207ENST00000611132 NUDCQ9Y266 331 aa19.2■□□□□ 0.66
VPS36-207ENST00000611132 TCERG1O14776 1098 aaKnown RBP19.19■□□□□ 0.66
VPS36-207ENST00000611132 KIF21BO75037 1637 aa19.19■□□□□ 0.66
VPS36-207ENST00000611132 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.17■□□□□ 0.66
VPS36-207ENST00000611132 RGS3P49796 1198 aa19.15■□□□□ 0.66
VPS36-207ENST00000611132 FMN1Q68DA7 1419 aa19.15■□□□□ 0.66
VPS36-207ENST00000611132 MPHOSPH9Q99550 1183 aa19.13■□□□□ 0.65
VPS36-207ENST00000611132 CFDP1Q9UEE9 299 aaPredicted RBP19.12■□□□□ 0.65
VPS36-207ENST00000611132 ZBED9Q6R2W3 1325 aa19.12■□□□□ 0.65
VPS36-207ENST00000611132 FOXD1Q16676 465 aa19.12■□□□□ 0.65
VPS36-207ENST00000611132 L3MBTL2Q969R5 705 aa19.12■□□□□ 0.65
VPS36-207ENST00000611132 PRKRIP1Q9H875 184 aaPredicted RBP19.12■□□□□ 0.65
VPS36-207ENST00000611132 RCAN3Q9UKA8 241 aa19.12■□□□□ 0.65
VPS36-207ENST00000611132 RGL3Q3MIN7 710 aa19.1■□□□□ 0.65
VPS36-207ENST00000611132 KNSTRNQ9Y448 316 aa19.07■□□□□ 0.64
VPS36-207ENST00000611132 RRBP1Q9P2E9 1410 aaKnown RBP19.07■□□□□ 0.64
VPS36-207ENST00000611132 TRIM44Q96DX7 344 aaPredicted RBP19.06■□□□□ 0.64
VPS36-207ENST00000611132 USP35Q9P2H5 1018 aa19.06■□□□□ 0.64
VPS36-207ENST00000611132 CC2D1BQ5T0F9 858 aaKnown RBP19.04■□□□□ 0.64
VPS36-207ENST00000611132 FHOD3Q2V2M9 1422 aa19.02■□□□□ 0.64
VPS36-207ENST00000611132 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.02■□□□□ 0.63
VPS36-207ENST00000611132 RALBP1Q15311 655 aa19.01■□□□□ 0.63
VPS36-207ENST00000611132 NAP1L5Q96NT1 182 aaPredicted RBP19■□□□□ 0.63
VPS36-207ENST00000611132 CCDC18Q5T9S5 1454 aa19■□□□□ 0.63
VPS36-207ENST00000611132 CDCA8Q53HL2 280 aa18.99■□□□□ 0.63
VPS36-207ENST00000611132 DCAF11Q8TEB1 546 aa18.99■□□□□ 0.63
VPS36-207ENST00000611132 ATAD2BQ9ULI0 1458 aa18.99■□□□□ 0.63
VPS36-207ENST00000611132 PLEKHD1A6NEE1 506 aa18.98■□□□□ 0.63
VPS36-207ENST00000611132 KTN1Q86UP2 1357 aaKnown RBP18.97■□□□□ 0.63
VPS36-207ENST00000611132 PDE4AP27815 886 aa18.97■□□□□ 0.63
VPS36-207ENST00000611132 L1TD1Q5T7N2 865 aaKnown RBP18.96■□□□□ 0.63
VPS36-207ENST00000611132 CHGAP10645 457 aaKnown RBP18.96■□□□□ 0.63
VPS36-207ENST00000611132 PHLDB1Q86UU1 1377 aa18.95■□□□□ 0.62
VPS36-207ENST00000611132 PDE3BQ13370 1112 aa18.95■□□□□ 0.62
VPS36-207ENST00000611132 PKD2Q13563 968 aa18.95■□□□□ 0.62
VPS36-207ENST00000611132 ARAP1Q96P48 1450 aa18.95■□□□□ 0.62
VPS36-207ENST00000611132 GOLGA6L22H0YM25 854 aa18.92■□□□□ 0.62
VPS36-207ENST00000611132 ROCK2O75116 1388 aaKnown RBP18.91■□□□□ 0.62
VPS36-207ENST00000611132 TMF1P82094 1093 aa18.91■□□□□ 0.62
VPS36-207ENST00000611132 FRAT1Q92837 279 aaPredicted RBP18.9■□□□□ 0.62
VPS36-207ENST00000611132 NLRP13Q86W25 1043 aa18.9■□□□□ 0.62
VPS36-207ENST00000611132 MSH5O43196 834 aa18.9■□□□□ 0.62
VPS36-207ENST00000611132 LRRC9Q6ZRR7 1453 aa18.9■□□□□ 0.62
VPS36-207ENST00000611132 SYNJ1O43426 1573 aa18.89■□□□□ 0.62
VPS36-207ENST00000611132 WASHC2AQ641Q2 1341 aa18.89■□□□□ 0.61
VPS36-207ENST00000611132 EXOC6Q8TAG9 804 aa18.89■□□□□ 0.61
VPS36-207ENST00000611132 ERICH3Q5RHP9 1530 aa18.89■□□□□ 0.61
VPS36-207ENST00000611132 RRP1P56182 461 aaKnown RBP18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms