RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 MS4A1P11836 297 aa11.41□□□□□ -0.58
SYNE3-205ENST00000557275 GOLGA6L4A6NEF3 574 aa11.4□□□□□ -0.58
SYNE3-205ENST00000557275 CCDC34Q96HJ3 373 aa11.4□□□□□ -0.59
SYNE3-205ENST00000557275 PNNQ9H307 717 aaKnown RBP11.39□□□□□ -0.59
SYNE3-205ENST00000557275 STAG3Q9UJ98 1225 aa11.37□□□□□ -0.59
SYNE3-205ENST00000557275 FBLN2P98095 1184 aa11.37□□□□□ -0.59
SYNE3-205ENST00000557275 A0A0U1RQG5 324 aaPredicted RBP11.37□□□□□ -0.59
SYNE3-205ENST00000557275 SYAP1Q96A49 352 aaPredicted RBP11.36□□□□□ -0.59
SYNE3-205ENST00000557275 HTATSF1O43719 755 aaKnown RBP11.36□□□□□ -0.59
SYNE3-205ENST00000557275 LOC105371045A0A1W2PR82 267 aa11.34□□□□□ -0.59
SYNE3-205ENST00000557275 MCCP23508 829 aa11.34□□□□□ -0.59
SYNE3-205ENST00000557275 FTSJ3Q8IY81 847 aaKnown RBP11.33□□□□□ -0.6
SYNE3-205ENST00000557275 FAM9BQ8IZU0 186 aa11.33□□□□□ -0.6
SYNE3-205ENST00000557275 CDCA8Q53HL2 280 aa11.33□□□□□ -0.6
SYNE3-205ENST00000557275 DRC7Q8IY82 874 aa11.32□□□□□ -0.6
SYNE3-205ENST00000557275 FGD1P98174 961 aa11.32□□□□□ -0.6
SYNE3-205ENST00000557275 TPM4P67936 248 aa11.31□□□□□ -0.6
SYNE3-205ENST00000557275 MRS2Q9HD23 443 aa11.31□□□□□ -0.6
SYNE3-205ENST00000557275 CFAP53Q96M91 514 aa11.31□□□□□ -0.6
SYNE3-205ENST00000557275 NOP58Q9Y2X3 529 aaKnown RBP11.3□□□□□ -0.6
SYNE3-205ENST00000557275 HSP90AB1P08238 724 aaKnown RBP11.3□□□□□ -0.6
SYNE3-205ENST00000557275 HSCBQ8IWL3 235 aa11.3□□□□□ -0.6
SYNE3-205ENST00000557275 HAP1P54257 671 aaPredicted RBP11.29□□□□□ -0.6
SYNE3-205ENST00000557275 PLCB2Q00722 1185 aa11.29□□□□□ -0.6
SYNE3-205ENST00000557275 PHF14O94880 888 aa11.28□□□□□ -0.6
SYNE3-205ENST00000557275 GOLGA6L3A6NEY3 463 aa11.28□□□□□ -0.6
SYNE3-205ENST00000557275 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
SYNE3-205ENST00000557275 EIF4G2P78344 907 aaKnown RBP eCLIP11.28□□□□□ -0.65e-8■■■□□ 18.8
SYNE3-205ENST00000557275 GPS2Q13227 327 aa11.27□□□□□ -0.61
SYNE3-205ENST00000557275 LAS1LQ9Y4W2 734 aaKnown RBP11.27□□□□□ -0.61
SYNE3-205ENST00000557275 GBP4Q96PP9 640 aa11.27□□□□□ -0.61
SYNE3-205ENST00000557275 DCAF1Q9Y4B6 1507 aa11.27□□□□□ -0.61
SYNE3-205ENST00000557275 CSPP1Q1MSJ5 1256 aa11.25□□□□□ -0.61
SYNE3-205ENST00000557275 KCNJ4P48050 445 aa11.24□□□□□ -0.61
SYNE3-205ENST00000557275 CCDC70Q6NSX1 233 aa11.23□□□□□ -0.61
SYNE3-205ENST00000557275 GOLGA2Q08379 1002 aa11.22□□□□□ -0.61
SYNE3-205ENST00000557275 GNL2Q13823 731 aaKnown RBP11.22□□□□□ -0.61
SYNE3-205ENST00000557275 HMMRO75330 724 aa11.21□□□□□ -0.62
SYNE3-205ENST00000557275 CLSTN1O94985 981 aa11.21□□□□□ -0.62
SYNE3-205ENST00000557275 RSPH6AQ9H0K4 717 aa11.21□□□□□ -0.62
SYNE3-205ENST00000557275 NOM1Q5C9Z4 860 aaKnown RBP11.2□□□□□ -0.62
SYNE3-205ENST00000557275 CEP89Q96ST8 783 aa11.2□□□□□ -0.62
SYNE3-205ENST00000557275 CHMP4AQ9BY43 222 aa11.2□□□□□ -0.62
SYNE3-205ENST00000557275 RRP12Q5JTH9 1297 aaKnown RBP11.19□□□□□ -0.62
SYNE3-205ENST00000557275 CCDC180Q9P1Z9 1646 aa11.18□□□□□ -0.62
SYNE3-205ENST00000557275 TPM3P06753 285 aa11.18□□□□□ -0.62
SYNE3-205ENST00000557275 TEX35Q5T0J7 233 aa11.17□□□□□ -0.62
SYNE3-205ENST00000557275 DDX10Q13206 875 aaKnown RBP11.17□□□□□ -0.62
SYNE3-205ENST00000557275 CHMP4CQ96CF2 233 aa11.16□□□□□ -0.62
SYNE3-205ENST00000557275 HSP90AA2PQ14568 343 aaPredicted RBP11.16□□□□□ -0.62
SYNE3-205ENST00000557275 PPP4R2Q9NY27 417 aa11.16□□□□□ -0.62
SYNE3-205ENST00000557275 AMER1Q5JTC6 1135 aaPredicted RBP11.16□□□□□ -0.62
SYNE3-205ENST00000557275 KIF3AQ9Y496 699 aa11.16□□□□□ -0.62
SYNE3-205ENST00000557275 TULP1O00294 542 aaPredicted RBP11.15□□□□□ -0.62
SYNE3-205ENST00000557275 NUDCQ9Y266 331 aa11.15□□□□□ -0.62
SYNE3-205ENST00000557275 MAPK8IP3Q9UPT6 1336 aa11.15□□□□□ -0.62
SYNE3-205ENST00000557275 KNSTRNQ9Y448 316 aa11.15□□□□□ -0.63
SYNE3-205ENST00000557275 PRM3Q9NNZ6 103 aa11.14□□□□□ -0.63
SYNE3-205ENST00000557275 OS9Q13438 667 aaPredicted RBP11.14□□□□□ -0.63
SYNE3-205ENST00000557275 CDR1P51861 262 aa11.14□□□□□ -0.63
SYNE3-205ENST00000557275 CALD1Q05682 793 aaKnown RBP11.13□□□□□ -0.63
SYNE3-205ENST00000557275 KIAA1211Q6ZU35 1233 aa11.13□□□□□ -0.63
SYNE3-205ENST00000557275 MTERF4Q7Z6M4 381 aaKnown RBP11.13□□□□□ -0.63
SYNE3-205ENST00000557275 KAT6BQ8WYB5 2073 aa11.13□□□□□ -0.63
SYNE3-205ENST00000557275 NPHP1O15259 732 aa11.12□□□□□ -0.63
SYNE3-205ENST00000557275 SALL2Q9Y467 1007 aaPredicted RBP11.12□□□□□ -0.63
SYNE3-205ENST00000557275 TSR1Q2NL82 804 aaKnown RBP11.12□□□□□ -0.63
SYNE3-205ENST00000557275 CHGAP10645 457 aaKnown RBP11.11□□□□□ -0.63
SYNE3-205ENST00000557275 ZNF777Q9ULD5 760 aaPredicted RBP11.11□□□□□ -0.63
SYNE3-205ENST00000557275 HDAC5Q9UQL6 1122 aa11.11□□□□□ -0.63
SYNE3-205ENST00000557275 HSP90B1P14625 803 aaKnown RBP11.11□□□□□ -0.63
SYNE3-205ENST00000557275 ABCC9O60706 1549 aa11.1□□□□□ -0.63
SYNE3-205ENST00000557275 TPM1P09493 284 aa11.09□□□□□ -0.63
SYNE3-205ENST00000557275 SCAF1Q9H7N4 1312 aaKnown RBP11.09□□□□□ -0.63
SYNE3-205ENST00000557275 TSPY4P0CV99 314 aa11.09□□□□□ -0.63
SYNE3-205ENST00000557275 TSPY10P0CW01 314 aa11.09□□□□□ -0.63
SYNE3-205ENST00000557275 DCTN1Q14203 1278 aa11.09□□□□□ -0.63
SYNE3-205ENST00000557275 RTN4Q9NQC3 1192 aaKnown RBP11.08□□□□□ -0.64
SYNE3-205ENST00000557275 NAP1L2Q9ULW6 460 aaPredicted RBP11.08□□□□□ -0.64
SYNE3-205ENST00000557275 ACBD3Q9H3P7 528 aa11.08□□□□□ -0.64
SYNE3-205ENST00000557275 DEKP35659 375 aaKnown RBP11.08□□□□□ -0.64
SYNE3-205ENST00000557275 CCDC191Q8NCU4 936 aa11.07□□□□□ -0.64
SYNE3-205ENST00000557275 CWC15Q9P013 229 aaKnown RBP11.07□□□□□ -0.64
SYNE3-205ENST00000557275 ANO8Q9HCE9 1232 aaPredicted RBP11.07□□□□□ -0.64
SYNE3-205ENST00000557275 GPATCH3Q96I76 525 aa11.06□□□□□ -0.64
SYNE3-205ENST00000557275 ATP6V1DQ9Y5K8 247 aa11.06□□□□□ -0.64
SYNE3-205ENST00000557275 TPM2P07951 284 aa11.06□□□□□ -0.64
SYNE3-205ENST00000557275 A0A0G2JS52 829 aa11.06□□□□□ -0.64
SYNE3-205ENST00000557275 RSF1Q96T23 1441 aaPredicted RBP11.06□□□□□ -0.64
SYNE3-205ENST00000557275 APPP05067 770 aa11.05□□□□□ -0.64
SYNE3-205ENST00000557275 DDX11L8A8MPP1 907 aa11.05□□□□□ -0.64
SYNE3-205ENST00000557275 IPO7O95373 1038 aaKnown RBP11.04□□□□□ -0.64
SYNE3-205ENST00000557275 STK11IPQ8N1F8 1099 aa11.04□□□□□ -0.64
SYNE3-205ENST00000557275 RDXP35241 583 aaKnown RBP11.04□□□□□ -0.64
SYNE3-205ENST00000557275 NCBP3Q53F19 620 aaKnown RBP11.04□□□□□ -0.64
SYNE3-205ENST00000557275 IPO8O15397 1037 aaKnown RBP11.04□□□□□ -0.64
SYNE3-205ENST00000557275 CAGE1Q8TC20 777 aa11.03□□□□□ -0.64
SYNE3-205ENST00000557275 TCERG1O14776 1098 aaKnown RBP11.03□□□□□ -0.64
SYNE3-205ENST00000557275 PABPN1Q86U42 306 aaKnown RBP eCLIP11.03□□□□□ -0.64
SYNE3-205ENST00000557275 AK7Q96M32 723 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms