RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NEFMP07197 916 aa17.12■□□□□ 0.33
USP53-209ENST00000514665 NBR1Q14596 966 aa17.1■□□□□ 0.33
USP53-209ENST00000514665 NACADO15069 1562 aa17.07■□□□□ 0.32
USP53-209ENST00000514665 BAZ1BQ9UIG0 1483 aaKnown RBP17.07■□□□□ 0.32
USP53-209ENST00000514665 KIF27Q86VH2 1401 aa17.07■□□□□ 0.32
USP53-209ENST00000514665 CHMP7Q8WUX9 453 aaPredicted RBP17.06■□□□□ 0.32
USP53-209ENST00000514665 SUPT16HQ9Y5B9 1047 aaKnown RBP17.05■□□□□ 0.32
USP53-209ENST00000514665 BAZ1AQ9NRL2 1556 aaPredicted RBP17.02■□□□□ 0.31
USP53-209ENST00000514665 RGL3Q3MIN7 710 aa17.02■□□□□ 0.31
USP53-209ENST00000514665 MROH2BQ7Z745 1585 aa17■□□□□ 0.31
USP53-209ENST00000514665 WDR43Q15061 677 aaKnown RBP eCLIP16.99■□□□□ 0.31
USP53-209ENST00000514665 KANK4Q5T7N3 995 aaPredicted RBP16.97■□□□□ 0.31
USP53-209ENST00000514665 CCNB3Q8WWL7 1395 aa16.97■□□□□ 0.31
USP53-209ENST00000514665 CCDC88BA6NC98 1476 aa16.96■□□□□ 0.31
USP53-209ENST00000514665 ABCC8Q09428 1581 aa16.96■□□□□ 0.31
USP53-209ENST00000514665 SENP3Q9H4L4 574 aaPredicted RBP16.95■□□□□ 0.3
USP53-209ENST00000514665 STAG3Q9UJ98 1225 aa16.95■□□□□ 0.3
USP53-209ENST00000514665 KCNH8Q96L42 1107 aa16.94■□□□□ 0.3
USP53-209ENST00000514665 CFDP1Q9UEE9 299 aaPredicted RBP16.93■□□□□ 0.3
USP53-209ENST00000514665 PLEKHD1A6NEE1 506 aa16.92■□□□□ 0.3
USP53-209ENST00000514665 UPF2Q9HAU5 1272 aaKnown RBP16.91■□□□□ 0.3
USP53-209ENST00000514665 NPM1P06748 294 aaKnown RBP eCLIP16.91■□□□□ 0.3
USP53-209ENST00000514665 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.91■□□□□ 0.3
USP53-209ENST00000514665 EIF5BO60841 1220 aaKnown RBP16.9■□□□□ 0.3
USP53-209ENST00000514665 HSP90AA1P07900 732 aaKnown RBP16.9■□□□□ 0.3
USP53-209ENST00000514665 PLPPR3Q6T4P5 718 aa16.89■□□□□ 0.29
USP53-209ENST00000514665 VPS8Q8N3P4 1428 aa16.89■□□□□ 0.29
USP53-209ENST00000514665 ESF1Q9H501 851 aaKnown RBP16.87■□□□□ 0.29
USP53-209ENST00000514665 ARXQ96QS3 562 aa16.87■□□□□ 0.29
USP53-209ENST00000514665 CARD11Q9BXL7 1154 aa16.87■□□□□ 0.29
USP53-209ENST00000514665 CARMIL1Q5VZK9 1371 aa16.86■□□□□ 0.29
USP53-209ENST00000514665 CUX2O14529 1486 aa16.83■□□□□ 0.29
USP53-209ENST00000514665 ANP32EQ9BTT0 268 aa16.83■□□□□ 0.28
USP53-209ENST00000514665 B4GALNT3Q6L9W6 998 aa16.81■□□□□ 0.28
USP53-209ENST00000514665 FHAD1B1AJZ9 1412 aa16.77■□□□□ 0.28
USP53-209ENST00000514665 PPP4R2Q9NY27 417 aa16.77■□□□□ 0.28
USP53-209ENST00000514665 FOXD1Q16676 465 aa16.77■□□□□ 0.27
USP53-209ENST00000514665 SETD5Q9C0A6 1442 aa16.75■□□□□ 0.27
USP53-209ENST00000514665 KNSTRNQ9Y448 316 aa16.74■□□□□ 0.27
USP53-209ENST00000514665 RAB3GAP2Q9H2M9 1393 aa16.74■□□□□ 0.27
USP53-209ENST00000514665 TIMELESSQ9UNS1 1208 aa16.74■□□□□ 0.27
USP53-209ENST00000514665 NEUROD2Q15784 382 aa16.73■□□□□ 0.27
USP53-209ENST00000514665 HSPA5P11021 654 aaKnown RBP16.72■□□□□ 0.27
USP53-209ENST00000514665 WIZO95785 1651 aa16.72■□□□□ 0.27
USP53-209ENST00000514665 ANP32BQ92688 251 aaKnown RBP16.7■□□□□ 0.26
USP53-209ENST00000514665 CC2D1BQ5T0F9 858 aaKnown RBP16.7■□□□□ 0.26
USP53-209ENST00000514665 DCAF11Q8TEB1 546 aa16.7■□□□□ 0.26
USP53-209ENST00000514665 CCER2I3L3R5 266 aa16.69■□□□□ 0.26
USP53-209ENST00000514665 RUSC2Q8N2Y8 1516 aa16.67■□□□□ 0.26
USP53-209ENST00000514665 RGS3P49796 1198 aa16.66■□□□□ 0.26
USP53-209ENST00000514665 PPP1R15AO75807 674 aaPredicted RBP16.65■□□□□ 0.26
USP53-209ENST00000514665 TNNT2P45379 298 aaPredicted RBP16.65■□□□□ 0.26
USP53-209ENST00000514665 RBM19Q9Y4C8 960 aaKnown RBP16.65■□□□□ 0.26
USP53-209ENST00000514665 LAS1LQ9Y4W2 734 aaKnown RBP16.65■□□□□ 0.26
USP53-209ENST00000514665 CDCA8Q53HL2 280 aa16.63■□□□□ 0.25
USP53-209ENST00000514665 PPM1GO15355 546 aaPredicted RBP16.62■□□□□ 0.25
USP53-209ENST00000514665 RAPGEF2Q9Y4G8 1499 aa16.62■□□□□ 0.25
USP53-209ENST00000514665 TDRD9Q8NDG6 1382 aaKnown RBP16.62■□□□□ 0.25
USP53-209ENST00000514665 EIF4G1Q04637 1599 aaKnown RBP16.62■□□□□ 0.25
USP53-209ENST00000514665 ARHGAP35Q9NRY4 1499 aa16.62■□□□□ 0.25
USP53-209ENST00000514665 PLEKHG5O94827 1062 aa16.61■□□□□ 0.25
USP53-209ENST00000514665 PKD2Q13563 968 aa16.61■□□□□ 0.25
USP53-209ENST00000514665 DDRGK1Q96HY6 314 aa16.6■□□□□ 0.25
USP53-209ENST00000514665 FRAT1Q92837 279 aaPredicted RBP16.59■□□□□ 0.25
USP53-209ENST00000514665 CFAP53Q96M91 514 aa16.59■□□□□ 0.25
USP53-209ENST00000514665 MPHOSPH9Q99550 1183 aa16.59■□□□□ 0.25
USP53-209ENST00000514665 NOP58Q9Y2X3 529 aaKnown RBP16.57■□□□□ 0.24
USP53-209ENST00000514665 MYH16Q9H6N6 1097 aa16.57■□□□□ 0.24
USP53-209ENST00000514665 BECN1Q14457 450 aa16.56■□□□□ 0.24
USP53-209ENST00000514665 TOP2AP11388 1531 aaKnown RBP16.56■□□□□ 0.24
USP53-209ENST00000514665 TSHZ2Q9NRE2 1034 aa16.56■□□□□ 0.24
USP53-209ENST00000514665 L3MBTL2Q969R5 705 aa16.55■□□□□ 0.24
USP53-209ENST00000514665 DHX57Q6P158 1386 aaKnown RBP16.54■□□□□ 0.24
USP53-209ENST00000514665 FTSJ3Q8IY81 847 aaKnown RBP16.53■□□□□ 0.24
USP53-209ENST00000514665 TMF1P82094 1093 aa16.53■□□□□ 0.24
USP53-209ENST00000514665 FHOD3Q2V2M9 1422 aa16.52■□□□□ 0.23
USP53-209ENST00000514665 RTN4Q9NQC3 1192 aaKnown RBP16.5■□□□□ 0.23
USP53-209ENST00000514665 ZBTB7CA1YPR0 619 aa16.49■□□□□ 0.23
USP53-209ENST00000514665 C14orf37Q86TY3 774 aa16.49■□□□□ 0.23
USP53-209ENST00000514665 U2SURPO15042 1029 aaKnown RBP16.48■□□□□ 0.23
USP53-209ENST00000514665 SMARCA2P51531 1590 aa16.48■□□□□ 0.23
USP53-209ENST00000514665 FMN1Q68DA7 1419 aa16.47■□□□□ 0.23
USP53-209ENST00000514665 MAPK8IP3Q9UPT6 1336 aa16.46■□□□□ 0.23
USP53-209ENST00000514665 NUP155O75694 1391 aa16.45■□□□□ 0.22
USP53-209ENST00000514665 POGKQ9P215 609 aa16.45■□□□□ 0.22
USP53-209ENST00000514665 ERCC6Q03468 1493 aa16.45■□□□□ 0.22
USP53-209ENST00000514665 SAFB2Q14151 953 aaKnown RBP eCLIP16.44■□□□□ 0.22
USP53-209ENST00000514665 NUDCQ9Y266 331 aa16.44■□□□□ 0.22
USP53-209ENST00000514665 RCAN3Q9UKA8 241 aa16.41■□□□□ 0.22
USP53-209ENST00000514665 ATAD2BQ9ULI0 1458 aa16.41■□□□□ 0.22
USP53-209ENST00000514665 NCLP19338 710 aaKnown RBP16.4■□□□□ 0.22
USP53-209ENST00000514665 CADPSQ9ULU8 1353 aa16.39■□□□□ 0.21
USP53-209ENST00000514665 KTN1Q86UP2 1357 aaKnown RBP16.38■□□□□ 0.21
USP53-209ENST00000514665 DEKP35659 375 aaKnown RBP16.38■□□□□ 0.21
USP53-209ENST00000514665 TRIM44Q96DX7 344 aaPredicted RBP16.38■□□□□ 0.21
USP53-209ENST00000514665 MORC1Q86VD1 984 aa16.37■□□□□ 0.21
USP53-209ENST00000514665 GGT6Q6P531 493 aa16.37■□□□□ 0.21
USP53-209ENST00000514665 ROCK2O75116 1388 aaKnown RBP16.36■□□□□ 0.21
USP53-209ENST00000514665 TPRNQ4KMQ1 711 aa16.36■□□□□ 0.21
USP53-209ENST00000514665 ERICH6BQ5W0A0 696 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 212.2 ms