RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-222ENST00000495981 CYB5RLQ6IPT4 315 aa8.45□□□□□ -1.06
VPS52-222ENST00000495981 ECM2O94769 699 aaPredicted RBP8.44□□□□□ -1.06
VPS52-222ENST00000495981 ZBTB12Q9Y330 459 aaPredicted RBP8.44□□□□□ -1.06
VPS52-222ENST00000495981 BAZ1AQ9NRL2 1556 aaPredicted RBP8.43□□□□□ -1.06
VPS52-222ENST00000495981 RGL2O15211 777 aa8.42□□□□□ -1.06
VPS52-222ENST00000495981 PAXIP1Q6ZW49 1069 aaPredicted RBP8.42□□□□□ -1.06
VPS52-222ENST00000495981 PDS5BQ9NTI5 1447 aa8.42□□□□□ -1.06
VPS52-222ENST00000495981 RIMBP3CA6NJZ7 1639 aa8.42□□□□□ -1.06
VPS52-222ENST00000495981 RIMBP3BA6NNM3 1639 aa8.42□□□□□ -1.06
VPS52-222ENST00000495981 RIMBP3Q9UFD9 1639 aa8.42□□□□□ -1.06
VPS52-222ENST00000495981 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.4□□□□□ -1.06
VPS52-222ENST00000495981 TPRNQ4KMQ1 711 aa8.39□□□□□ -1.07
VPS52-222ENST00000495981 ILDR1Q86SU0 546 aaPredicted RBP8.39□□□□□ -1.07
VPS52-222ENST00000495981 KLHL34Q8N239 644 aa8.39□□□□□ -1.07
VPS52-222ENST00000495981 KIF21AQ7Z4S6 1674 aa8.39□□□□□ -1.07
VPS52-222ENST00000495981 MRC2Q9UBG0 1479 aa8.38□□□□□ -1.07
VPS52-222ENST00000495981 ARHGEF11O15085 1522 aa8.38□□□□□ -1.07
VPS52-222ENST00000495981 BAZ1BQ9UIG0 1483 aaKnown RBP8.38□□□□□ -1.07
VPS52-222ENST00000495981 LAMC3Q9Y6N6 1575 aa8.37□□□□□ -1.07
VPS52-222ENST00000495981 CFAP44Q96MT7 982 aa8.37□□□□□ -1.07
VPS52-222ENST00000495981 WDR62O43379 1518 aa8.37□□□□□ -1.07
VPS52-222ENST00000495981 MROH2BQ7Z745 1585 aa8.36□□□□□ -1.07
VPS52-222ENST00000495981 TSHZ2Q9NRE2 1034 aa8.36□□□□□ -1.07
VPS52-222ENST00000495981 CADPSQ9ULU8 1353 aa8.35□□□□□ -1.07
VPS52-222ENST00000495981 SSUH2Q9Y2M2 353 aa8.34□□□□□ -1.07
VPS52-222ENST00000495981 STAG3Q9UJ98 1225 aa8.33□□□□□ -1.08
VPS52-222ENST00000495981 SPRYD3Q8NCJ5 442 aa8.31□□□□□ -1.08
VPS52-222ENST00000495981 ZNF692Q9BU19 519 aaPredicted RBP8.31□□□□□ -1.08
VPS52-222ENST00000495981 ARAP1Q96P48 1450 aa8.31□□□□□ -1.08
VPS52-222ENST00000495981 PLCD3Q8N3E9 789 aa8.29□□□□□ -1.08
VPS52-222ENST00000495981 WIZO95785 1651 aa8.27□□□□□ -1.08
VPS52-222ENST00000495981 ZNF608Q9ULD9 1512 aaPredicted RBP8.26□□□□□ -1.09
VPS52-222ENST00000495981 SPDYE2BA6NHP3 402 aa8.26□□□□□ -1.09
VPS52-222ENST00000495981 SPDYE6P0CI01 402 aa8.26□□□□□ -1.09
VPS52-222ENST00000495981 SPDYE2Q495Y8 402 aa8.26□□□□□ -1.09
VPS52-222ENST00000495981 RBM42Q9BTD8 480 aaKnown RBP8.26□□□□□ -1.09
VPS52-222ENST00000495981 MIER1Q8N108 512 aa8.25□□□□□ -1.09
VPS52-222ENST00000495981 CHGAP10645 457 aaKnown RBP8.24□□□□□ -1.09
VPS52-222ENST00000495981 URB2Q14146 1524 aaKnown RBP8.24□□□□□ -1.09
VPS52-222ENST00000495981 FANCD2Q9BXW9 1451 aa8.23□□□□□ -1.09
VPS52-222ENST00000495981 CEP164Q9UPV0 1460 aa8.22□□□□□ -1.09
VPS52-222ENST00000495981 PRDM2Q13029 1718 aa8.2□□□□□ -1.1
VPS52-222ENST00000495981 HS6ST3Q8IZP7 471 aa8.2□□□□□ -1.1
VPS52-222ENST00000495981 RNF25Q96BH1 459 aaPredicted RBP8.2□□□□□ -1.1
VPS52-222ENST00000495981 CIZ1Q9ULV3 898 aaPredicted RBP8.2□□□□□ -1.1
VPS52-222ENST00000495981 TOP2AP11388 1531 aaKnown RBP8.19□□□□□ -1.1
VPS52-222ENST00000495981 NKX1-1Q15270 411 aaPredicted RBP8.16□□□□□ -1.1
VPS52-222ENST00000495981 KDM4FA0A1W2PPD8 638 aa8.15□□□□□ -1.1
VPS52-222ENST00000495981 CFTRP13569 1480 aa8.14□□□□□ -1.11
VPS52-222ENST00000495981 AKT1S1Q96B36 256 aa8.14□□□□□ -1.11
VPS52-222ENST00000495981 AQRO60306 1485 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS52-222ENST00000495981 RSF1Q96T23 1441 aaPredicted RBP8.12□□□□□ -1.11
VPS52-222ENST00000495981 ZBTB47Q9UFB7 747 aaPredicted RBP8.12□□□□□ -1.11
VPS52-222ENST00000495981 NBR1Q14596 966 aa8.1□□□□□ -1.11
VPS52-222ENST00000495981 IFT140Q96RY7 1462 aa8.1□□□□□ -1.11
VPS52-222ENST00000495981 GTPBP6O43824 516 aaPredicted RBP8.09□□□□□ -1.11
VPS52-222ENST00000495981 NUBP1P53384 320 aa8.09□□□□□ -1.11
VPS52-222ENST00000495981 REM2Q8IYK8 340 aaPredicted RBP8.06□□□□□ -1.12
VPS52-222ENST00000495981 EIF4G3O43432 1585 aaKnown RBP8.05□□□□□ -1.12
VPS52-222ENST00000495981 PLEKHG5O94827 1062 aa8.04□□□□□ -1.12
VPS52-222ENST00000495981 GSE1Q14687 1217 aa8.04□□□□□ -1.12
VPS52-222ENST00000495981 TIMELESSQ9UNS1 1208 aa8.04□□□□□ -1.12
VPS52-222ENST00000495981 RIOK3O14730 519 aaKnown RBP8.03□□□□□ -1.12
VPS52-222ENST00000495981 TOPBP1Q92547 1522 aa8.02□□□□□ -1.13
VPS52-222ENST00000495981 CLASP1Q7Z460 1538 aa8.01□□□□□ -1.13
VPS52-222ENST00000495981 DNMBPQ6XZF7 1577 aa8.01□□□□□ -1.13
VPS52-222ENST00000495981 CCDC88BA6NC98 1476 aa8□□□□□ -1.13
VPS52-222ENST00000495981 TDRD9Q8NDG6 1382 aaKnown RBP8□□□□□ -1.13
VPS52-222ENST00000495981 CHD1O14646 1710 aa8□□□□□ -1.13
VPS52-222ENST00000495981 GAPVD1Q14C86 1478 aa8□□□□□ -1.13
VPS52-222ENST00000495981 TARBP1Q13395 1621 aaKnown RBP8□□□□□ -1.13
VPS52-222ENST00000495981 MNX1P50219 401 aaPredicted RBP7.99□□□□□ -1.13
VPS52-222ENST00000495981 SPDYE1Q8NFV5 336 aaPredicted RBP7.98□□□□□ -1.13
VPS52-222ENST00000495981 TULP1O00294 542 aaPredicted RBP7.97□□□□□ -1.13
VPS52-222ENST00000495981 CHMP7Q8WUX9 453 aaPredicted RBP7.97□□□□□ -1.13
VPS52-222ENST00000495981 RAD54L2Q9Y4B4 1467 aa7.97□□□□□ -1.13
VPS52-222ENST00000495981 STK25O00506 426 aa7.96□□□□□ -1.14
VPS52-222ENST00000495981 PITPNM1O00562 1244 aa7.96□□□□□ -1.14
VPS52-222ENST00000495981 WDR97A6NE52 1622 aa7.96□□□□□ -1.14
VPS52-222ENST00000495981 SNAPC4Q5SXM2 1469 aa7.95□□□□□ -1.14
VPS52-222ENST00000495981 VGFO15240 615 aaPredicted RBP7.95□□□□□ -1.14
VPS52-222ENST00000495981 DCAF8Q5TAQ9 597 aa7.95□□□□□ -1.14
VPS52-222ENST00000495981 SGIP1Q9BQI5 828 aa7.95□□□□□ -1.14
VPS52-222ENST00000495981 CLEC11AQ9Y240 323 aa7.95□□□□□ -1.14
VPS52-222ENST00000495981 ERCC6L2Q5T890 1561 aa7.95□□□□□ -1.14
VPS52-222ENST00000495981 CHRM1P11229 460 aaPredicted RBP7.94□□□□□ -1.14
VPS52-222ENST00000495981 CHRDL2Q6WN34 429 aa7.94□□□□□ -1.14
VPS52-222ENST00000495981 CREBZFQ9NS37 354 aa7.94□□□□□ -1.14
VPS52-222ENST00000495981 GTF3C3Q9Y5Q9 886 aa7.93□□□□□ -1.14
VPS52-222ENST00000495981 POLA1P09884 1462 aaPredicted RBP7.93□□□□□ -1.14
VPS52-222ENST00000495981 RASEFQ8IZ41 740 aa7.92□□□□□ -1.14
VPS52-222ENST00000495981 ABCC8Q09428 1581 aa7.92□□□□□ -1.14
VPS52-222ENST00000495981 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.91□□□□□ -1.14
VPS52-222ENST00000495981 FAM69CQ0P6D2 419 aa7.91□□□□□ -1.14
VPS52-222ENST00000495981 ILDR2Q71H61 639 aa7.91□□□□□ -1.14
VPS52-222ENST00000495981 FBXO41Q8TF61 875 aa7.91□□□□□ -1.14
VPS52-222ENST00000495981 ZFP91Q96JP5 570 aaPredicted RBP7.91□□□□□ -1.14
VPS52-222ENST00000495981 BCL11BQ9C0K0 894 aaPredicted RBP7.91□□□□□ -1.14
VPS52-222ENST00000495981 FAM212AQ96EL1 285 aa7.89□□□□□ -1.15
VPS52-222ENST00000495981 SOGA1O94964 1423 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms