RNA–Protein interactions for RNA: ENST00000435505.6

VRK2-206, Transcript of vaccinia related kinase 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK2, Length 2,446 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-206ENST00000435505 MYO15BQ96JP2 1530 aa9.68□□□□□ -0.86
VRK2-206ENST00000435505 NECTIN2Q92692 538 aa9.67□□□□□ -0.86
VRK2-206ENST00000435505 ZMYND15Q9H091 742 aa9.67□□□□□ -0.86
VRK2-206ENST00000435505 RNF25Q96BH1 459 aaPredicted RBP9.66□□□□□ -0.86
VRK2-206ENST00000435505 SLC24A3Q9HC58 644 aa9.65□□□□□ -0.86
VRK2-206ENST00000435505 CIZ1Q9ULV3 898 aaPredicted RBP9.65□□□□□ -0.86
VRK2-206ENST00000435505 ARID3CA6NKF2 412 aa9.63□□□□□ -0.87
VRK2-206ENST00000435505 RSPH6AQ9H0K4 717 aa9.63□□□□□ -0.87
VRK2-206ENST00000435505 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.6□□□□□ -0.87
VRK2-206ENST00000435505 HNRNPUL2Q1KMD3 747 aaKnown RBP9.6□□□□□ -0.87
VRK2-206ENST00000435505 KCNV2Q8TDN2 545 aa9.6□□□□□ -0.87
VRK2-206ENST00000435505 ZC3H15Q8WU90 426 aaKnown RBP9.6□□□□□ -0.87
VRK2-206ENST00000435505 CCDC9Q9Y3X0 531 aaKnown RBP9.6□□□□□ -0.87
VRK2-206ENST00000435505 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.6□□□□□ -0.879e-6■□□□□ 10.7
VRK2-206ENST00000435505 TTBK1Q5TCY1 1321 aaPredicted RBP9.58□□□□□ -0.88
VRK2-206ENST00000435505 MSH5O43196 834 aa9.56□□□□□ -0.88
VRK2-206ENST00000435505 PLCD3Q8N3E9 789 aa9.55□□□□□ -0.88
VRK2-206ENST00000435505 IGSF3O75054 1194 aa9.55□□□□□ -0.88
VRK2-206ENST00000435505 ZBTB7CA1YPR0 619 aa9.53□□□□□ -0.88
VRK2-206ENST00000435505 PDIA4P13667 645 aaKnown RBP9.5□□□□□ -0.89
VRK2-206ENST00000435505 GPBP1L1Q9HC44 474 aaPredicted RBP9.5□□□□□ -0.89
VRK2-206ENST00000435505 P3H3Q8IVL6 736 aa9.5□□□□□ -0.89
VRK2-206ENST00000435505 APBB1O00213 710 aa9.49□□□□□ -0.89
VRK2-206ENST00000435505 TRIM41Q8WV44 630 aa9.48□□□□□ -0.89
VRK2-206ENST00000435505 IL27Q8NEV9 243 aa9.47□□□□□ -0.89
VRK2-206ENST00000435505 BCL11AQ9H165 835 aa9.47□□□□□ -0.89
VRK2-206ENST00000435505 ACIN1Q9UKV3 1341 aaKnown RBP9.46□□□□□ -0.89
VRK2-206ENST00000435505 MIER1Q8N108 512 aa9.46□□□□□ -0.9
VRK2-206ENST00000435505 CADPS2Q86UW7 1296 aa9.45□□□□□ -0.9
VRK2-206ENST00000435505 DCAF8L1A6NGE4 600 aa9.45□□□□□ -0.9
VRK2-206ENST00000435505 NEUROD1Q13562 356 aa9.43□□□□□ -0.9
VRK2-206ENST00000435505 MKRN3Q13064 507 aaKnown RBP9.43□□□□□ -0.9
VRK2-206ENST00000435505 CCDC180Q9P1Z9 1646 aa9.42□□□□□ -0.9
VRK2-206ENST00000435505 ZNF428Q96B54 188 aa9.42□□□□□ -0.9
VRK2-206ENST00000435505 EIF5BO60841 1220 aaKnown RBP9.41□□□□□ -0.9
VRK2-206ENST00000435505 STK25O00506 426 aa9.41□□□□□ -0.9
VRK2-206ENST00000435505 FAM9AQ8IZU1 332 aaPredicted RBP9.41□□□□□ -0.9
VRK2-206ENST00000435505 DCAF1Q9Y4B6 1507 aa9.4□□□□□ -0.9
VRK2-206ENST00000435505 POLA2Q14181 598 aa9.4□□□□□ -0.91
VRK2-206ENST00000435505 KCTD17Q8N5Z5 321 aa9.4□□□□□ -0.91
VRK2-206ENST00000435505 SEMA3EO15041 775 aa9.38□□□□□ -0.91
VRK2-206ENST00000435505 ZMYND10O75800 440 aa9.37□□□□□ -0.91
VRK2-206ENST00000435505 RAD21O60216 631 aa9.35□□□□□ -0.91
VRK2-206ENST00000435505 CCDC82Q8N4S0 544 aa9.35□□□□□ -0.91
VRK2-206ENST00000435505 STAG3Q9UJ98 1225 aa9.34□□□□□ -0.91
VRK2-206ENST00000435505 RIOK3O14730 519 aaKnown RBP9.33□□□□□ -0.92
VRK2-206ENST00000435505 RGS22Q8NE09 1264 aa9.32□□□□□ -0.92
VRK2-206ENST00000435505 MTMR7Q9Y216 660 aa9.32□□□□□ -0.92
VRK2-206ENST00000435505 ZEB1P37275 1124 aaPredicted RBP9.32□□□□□ -0.92
VRK2-206ENST00000435505 SHROOM4Q9ULL8 1493 aa9.31□□□□□ -0.92
VRK2-206ENST00000435505 CENPBP07199 599 aaPredicted RBP9.31□□□□□ -0.92
VRK2-206ENST00000435505 WDR70Q9NW82 654 aa9.31□□□□□ -0.92
VRK2-206ENST00000435505 FOXD4L5Q5VV16 416 aaPredicted RBP9.3□□□□□ -0.92
VRK2-206ENST00000435505 FOXD4L4Q8WXT5 416 aaPredicted RBP9.3□□□□□ -0.92
VRK2-206ENST00000435505 KDM4CQ9H3R0 1056 aa9.29□□□□□ -0.92
VRK2-206ENST00000435505 TESPA1A2RU30 521 aaPredicted RBP9.28□□□□□ -0.92
VRK2-206ENST00000435505 BCL11BQ9C0K0 894 aaPredicted RBP9.27□□□□□ -0.92
VRK2-206ENST00000435505 AEBP1Q8IUX7 1158 aa9.26□□□□□ -0.93
VRK2-206ENST00000435505 STK24Q9Y6E0 443 aa9.26□□□□□ -0.93
VRK2-206ENST00000435505 RBM25P49756 843 aaKnown RBP9.24□□□□□ -0.93
VRK2-206ENST00000435505 CLUAP1Q96AJ1 413 aa9.24□□□□□ -0.93
VRK2-206ENST00000435505 BARGINQ6ZT62 677 aa9.23□□□□□ -0.93
VRK2-206ENST00000435505 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.22□□□□□ -0.93
VRK2-206ENST00000435505 ZFP91Q96JP5 570 aaPredicted RBP9.22□□□□□ -0.93
VRK2-206ENST00000435505 PLEKHG5O94827 1062 aa9.21□□□□□ -0.93
VRK2-206ENST00000435505 ARHGEF1Q92888 912 aaKnown RBP9.2□□□□□ -0.94
VRK2-206ENST00000435505 FAM117AQ9C073 453 aa9.2□□□□□ -0.94
VRK2-206ENST00000435505 VGFO15240 615 aaPredicted RBP9.18□□□□□ -0.94
VRK2-206ENST00000435505 SPINK5Q9NQ38 1064 aaPredicted RBP9.18□□□□□ -0.94
VRK2-206ENST00000435505 AK7Q96M32 723 aa9.17□□□□□ -0.94
VRK2-206ENST00000435505 ZNF692Q9BU19 519 aaPredicted RBP9.17□□□□□ -0.94
VRK2-206ENST00000435505 CDK11BP21127 795 aaKnown RBP9.16□□□□□ -0.94
VRK2-206ENST00000435505 MFAP1P55081 439 aaKnown RBP9.16□□□□□ -0.94
VRK2-206ENST00000435505 TRAIPQ9BWF2 469 aa9.16□□□□□ -0.94
VRK2-206ENST00000435505 CDK11AQ9UQ88 783 aaPredicted RBP9.16□□□□□ -0.94
VRK2-206ENST00000435505 ANP32EQ9BTT0 268 aa9.15□□□□□ -0.94
VRK2-206ENST00000435505 GZF1Q9H116 711 aaPredicted RBP9.15□□□□□ -0.94
VRK2-206ENST00000435505 TRAK2O60296 914 aa9.14□□□□□ -0.95
VRK2-206ENST00000435505 ONECUT3O60422 494 aaPredicted RBP9.14□□□□□ -0.95
VRK2-206ENST00000435505 PABPN1Q86U42 306 aaKnown RBP eCLIP9.14□□□□□ -0.95
VRK2-206ENST00000435505 TMCO4Q5TGY1 634 aa9.14□□□□□ -0.95
VRK2-206ENST00000435505 NUBP1P53384 320 aa9.13□□□□□ -0.95
VRK2-206ENST00000435505 PDE4DQ08499 809 aa9.13□□□□□ -0.95
VRK2-206ENST00000435505 GSE1Q14687 1217 aa9.13□□□□□ -0.95
VRK2-206ENST00000435505 CHMP4AQ9BY43 222 aa9.13□□□□□ -0.95
VRK2-206ENST00000435505 ZNF316A6NFI3 1004 aaPredicted RBP9.13□□□□□ -0.95
VRK2-206ENST00000435505 ZBTB47Q9UFB7 747 aaPredicted RBP9.13□□□□□ -0.95
VRK2-206ENST00000435505 PLEKHG3A1L390 1219 aa9.12□□□□□ -0.95
VRK2-206ENST00000435505 RYDENQ9NUL5 291 aaKnown RBP9.12□□□□□ -0.95
VRK2-206ENST00000435505 TRIM66O15016 1216 aa9.12□□□□□ -0.95
VRK2-206ENST00000435505 DCAF8Q5TAQ9 597 aa9.11□□□□□ -0.95
VRK2-206ENST00000435505 E2F4Q16254 413 aa9.11□□□□□ -0.95
VRK2-206ENST00000435505 RBM26Q5T8P6 1007 aaKnown RBP9.11□□□□□ -0.95
VRK2-206ENST00000435505 ZNF777Q9ULD5 760 aaPredicted RBP9.11□□□□□ -0.95
VRK2-206ENST00000435505 IRF5Q13568 498 aa9.1□□□□□ -0.95
VRK2-206ENST00000435505 KRI1Q8N9T8 703 aaKnown RBP9.1□□□□□ -0.95
VRK2-206ENST00000435505 HSP90B1P14625 803 aaKnown RBP9.09□□□□□ -0.96
VRK2-206ENST00000435505 RETREG2Q8NC44 543 aa9.09□□□□□ -0.96
VRK2-206ENST00000435505 FLIIQ13045 1269 aa9.06□□□□□ -0.96
VRK2-206ENST00000435505 SSUH2Q9Y2M2 353 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms