RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 NCLP19338 710 aaKnown RBP7.59□□□□□ -1.2
PTPN4-203ENST00000430976 CHMP4BQ9H444 224 aaKnown RBP7.59□□□□□ -1.2
PTPN4-203ENST00000430976 PATL2C9JE40 543 aaKnown RBP7.58□□□□□ -1.2
PTPN4-203ENST00000430976 WWC1Q8IX03 1113 aa7.58□□□□□ -1.2
PTPN4-203ENST00000430976 NAP1L2Q9ULW6 460 aaPredicted RBP7.58□□□□□ -1.2
PTPN4-203ENST00000430976 PPP6R1Q9UPN7 881 aa7.58□□□□□ -1.2
PTPN4-203ENST00000430976 HMGB1P09429 215 aaKnown RBP7.57□□□□□ -1.2
PTPN4-203ENST00000430976 BRPF3Q9ULD4 1205 aa7.57□□□□□ -1.2
PTPN4-203ENST00000430976 CNPY4Q8N129 248 aa7.57□□□□□ -1.2
PTPN4-203ENST00000430976 USP35Q9P2H5 1018 aa7.56□□□□□ -1.2
PTPN4-203ENST00000430976 ERICH6BQ5W0A0 696 aa7.56□□□□□ -1.2
PTPN4-203ENST00000430976 FKBP8Q14318 412 aa7.54□□□□□ -1.2
PTPN4-203ENST00000430976 ZFP91Q96JP5 570 aaPredicted RBP7.54□□□□□ -1.2
PTPN4-203ENST00000430976 PTMSP20962 102 aa7.54□□□□□ -1.2
PTPN4-203ENST00000430976 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.53□□□□□ -1.2
PTPN4-203ENST00000430976 BCCIPQ9P287 314 aaKnown RBP eCLIP7.53□□□□□ -1.2
PTPN4-203ENST00000430976 PPM1GO15355 546 aaPredicted RBP7.52□□□□□ -1.2
PTPN4-203ENST00000430976 SHROOM4Q9ULL8 1493 aa7.52□□□□□ -1.21
PTPN4-203ENST00000430976 BBXQ8WY36 941 aaPredicted RBP7.52□□□□□ -1.21
PTPN4-203ENST00000430976 PSMD1Q99460 953 aa7.51□□□□□ -1.21
PTPN4-203ENST00000430976 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.5□□□□□ -1.21
PTPN4-203ENST00000430976 OS9Q13438 667 aaPredicted RBP7.49□□□□□ -1.21
PTPN4-203ENST00000430976 KDM2AQ9Y2K7 1162 aa7.49□□□□□ -1.21
PTPN4-203ENST00000430976 ZNF428Q96B54 188 aa7.48□□□□□ -1.21
PTPN4-203ENST00000430976 CWC22Q9HCG8 908 aaKnown RBP7.48□□□□□ -1.21
PTPN4-203ENST00000430976 NBR1Q14596 966 aa7.48□□□□□ -1.21
PTPN4-203ENST00000430976 CNGB1Q14028 1251 aaPredicted RBP7.47□□□□□ -1.21
PTPN4-203ENST00000430976 CANXP27824 592 aaKnown RBP7.46□□□□□ -1.21
PTPN4-203ENST00000430976 RSPH6AQ9H0K4 717 aa7.46□□□□□ -1.22
PTPN4-203ENST00000430976 RBM25P49756 843 aaKnown RBP7.46□□□□□ -1.22
PTPN4-203ENST00000430976 RSPH4AQ5TD94 716 aa7.46□□□□□ -1.22
PTPN4-203ENST00000430976 ZBTB7CA1YPR0 619 aa7.45□□□□□ -1.22
PTPN4-203ENST00000430976 CCER1Q8TC90 406 aaPredicted RBP7.45□□□□□ -1.22
PTPN4-203ENST00000430976 PLCD3Q8N3E9 789 aa7.45□□□□□ -1.22
PTPN4-203ENST00000430976 APPP05067 770 aa7.44□□□□□ -1.22
PTPN4-203ENST00000430976 PLCD4Q9BRC7 762 aa7.44□□□□□ -1.22
PTPN4-203ENST00000430976 FAM9BQ8IZU0 186 aa7.43□□□□□ -1.22
PTPN4-203ENST00000430976 TMED8Q6PL24 325 aaPredicted RBP7.42□□□□□ -1.22
PTPN4-203ENST00000430976 SECISBP2LQ93073 1101 aaKnown RBP7.4□□□□□ -1.22
PTPN4-203ENST00000430976 RAD21O60216 631 aa7.39□□□□□ -1.23
PTPN4-203ENST00000430976 CLSTN1O94985 981 aa7.38□□□□□ -1.23
PTPN4-203ENST00000430976 TICAM2Q86XR7 235 aa7.38□□□□□ -1.23
PTPN4-203ENST00000430976 FOXD4L5Q5VV16 416 aaPredicted RBP7.38□□□□□ -1.23
PTPN4-203ENST00000430976 FOXD4L4Q8WXT5 416 aaPredicted RBP7.38□□□□□ -1.23
PTPN4-203ENST00000430976 FAM50AQ14320 339 aaKnown RBP7.37□□□□□ -1.23
PTPN4-203ENST00000430976 ARID3CA6NKF2 412 aa7.36□□□□□ -1.23
PTPN4-203ENST00000430976 KAT6BQ8WYB5 2073 aa7.36□□□□□ -1.23
PTPN4-203ENST00000430976 IL27Q8NEV9 243 aa7.36□□□□□ -1.23
PTPN4-203ENST00000430976 FAM193AP78312 1265 aa7.35□□□□□ -1.23
PTPN4-203ENST00000430976 PTMAP06454 111 aaKnown RBP7.34□□□□□ -1.23
PTPN4-203ENST00000430976 MAPK8IP2Q13387 824 aaPredicted RBP7.34□□□□□ -1.23
PTPN4-203ENST00000430976 CERS3Q8IU89 383 aa7.34□□□□□ -1.23
PTPN4-203ENST00000430976 AEBP1Q8IUX7 1158 aa7.34□□□□□ -1.23
PTPN4-203ENST00000430976 DIEXFQ68CQ4 756 aaKnown RBP7.33□□□□□ -1.24
PTPN4-203ENST00000430976 TSHZ2Q9NRE2 1034 aa7.33□□□□□ -1.24
PTPN4-203ENST00000430976 KCTD17Q8N5Z5 321 aa7.32□□□□□ -1.24
PTPN4-203ENST00000430976 FTSJ3Q8IY81 847 aaKnown RBP7.32□□□□□ -1.24
PTPN4-203ENST00000430976 SOX12O15370 315 aa7.31□□□□□ -1.24
PTPN4-203ENST00000430976 HSP90AA2PQ14568 343 aaPredicted RBP7.31□□□□□ -1.24
PTPN4-203ENST00000430976 IPO4Q8TEX9 1081 aaKnown RBP7.31□□□□□ -1.24
PTPN4-203ENST00000430976 KDM4AO75164 1064 aa7.3□□□□□ -1.24
PTPN4-203ENST00000430976 TRHP20396 242 aaPredicted RBP7.3□□□□□ -1.24
PTPN4-203ENST00000430976 FAM43BQ6ZT52 329 aaPredicted RBP7.29□□□□□ -1.24
PTPN4-203ENST00000430976 GPATCH11Q8N954 259 aa7.27□□□□□ -1.25
PTPN4-203ENST00000430976 PUS7Q96PZ0 661 aaKnown RBP7.27□□□□□ -1.25
PTPN4-203ENST00000430976 NECTIN2Q92692 538 aa7.26□□□□□ -1.25
PTPN4-203ENST00000430976 ZNF316A6NFI3 1004 aaPredicted RBP7.26□□□□□ -1.25
PTPN4-203ENST00000430976 ANAPC15P60006 121 aa7.26□□□□□ -1.25
PTPN4-203ENST00000430976 TEX2Q8IWB9 1127 aa7.26□□□□□ -1.25
PTPN4-203ENST00000430976 NISCHQ9Y2I1 1504 aa7.24□□□□□ -1.25
PTPN4-203ENST00000430976 PIAS4Q8N2W9 510 aaPredicted RBP7.23□□□□□ -1.25
PTPN4-203ENST00000430976 PRDM16Q9HAZ2 1276 aa7.23□□□□□ -1.25
PTPN4-203ENST00000430976 MTMR7Q9Y216 660 aa7.23□□□□□ -1.25
PTPN4-203ENST00000430976 ZBTB22O15209 634 aa7.22□□□□□ -1.25
PTPN4-203ENST00000430976 VGLL3A8MV65 326 aa7.22□□□□□ -1.25
PTPN4-203ENST00000430976 FOXD4L6Q3SYB3 417 aaPredicted RBP7.21□□□□□ -1.25
PTPN4-203ENST00000430976 FOXD4L3Q6VB84 417 aaPredicted RBP7.21□□□□□ -1.25
PTPN4-203ENST00000430976 NEFMP07197 916 aa7.21□□□□□ -1.26
PTPN4-203ENST00000430976 E9PSI1 815 aa7.2□□□□□ -1.26
PTPN4-203ENST00000430976 RGS3P49796 1198 aa7.2□□□□□ -1.26
PTPN4-203ENST00000430976 FAM177A1Q8N128 213 aaPredicted RBP7.2□□□□□ -1.26
PTPN4-203ENST00000430976 KCNG1Q9UIX4 513 aa7.19□□□□□ -1.26
PTPN4-203ENST00000430976 HSP90AA1P07900 732 aaKnown RBP7.19□□□□□ -1.26
PTPN4-203ENST00000430976 CCDC27Q2M243 656 aa7.18□□□□□ -1.26
PTPN4-203ENST00000430976 ZNF692Q9BU19 519 aaPredicted RBP7.18□□□□□ -1.26
PTPN4-203ENST00000430976 DNTTIP2Q5QJE6 756 aaKnown RBP7.17□□□□□ -1.26
PTPN4-203ENST00000430976 PPP1R1BQ9UD71 204 aaPredicted RBP7.17□□□□□ -1.26
PTPN4-203ENST00000430976 SUPT16HQ9Y5B9 1047 aaKnown RBP7.17□□□□□ -1.26
PTPN4-203ENST00000430976 HDAC5Q9UQL6 1122 aa7.16□□□□□ -1.26
PTPN4-203ENST00000430976 RBM19Q9Y4C8 960 aaKnown RBP7.16□□□□□ -1.26
PTPN4-203ENST00000430976 IRX3P78415 501 aaPredicted RBP7.16□□□□□ -1.26
PTPN4-203ENST00000430976 TNNT2P45379 298 aaPredicted RBP7.16□□□□□ -1.26
PTPN4-203ENST00000430976 APBB1O00213 710 aa7.16□□□□□ -1.26
PTPN4-203ENST00000430976 LAS1LQ9Y4W2 734 aaKnown RBP7.15□□□□□ -1.26
PTPN4-203ENST00000430976 CLGNO14967 610 aa7.15□□□□□ -1.26
PTPN4-203ENST00000430976 RRP9O43818 475 aaKnown RBP7.14□□□□□ -1.27
PTPN4-203ENST00000430976 GTF2E1P29083 439 aaPredicted RBP7.14□□□□□ -1.27
PTPN4-203ENST00000430976 NEUROD2Q15784 382 aa7.13□□□□□ -1.27
PTPN4-203ENST00000430976 MPNDQ8N594 471 aa7.13□□□□□ -1.27
PTPN4-203ENST00000430976 ITGAEP38570 1179 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms