RNA–Protein interactions for RNA: ENST00000412145.5

PTPN3-203, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,765 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-203ENST00000412145 DNTTIP2Q5QJE6 756 aaKnown RBP9.63□□□□□ -0.87
PTPN3-203ENST00000412145 STAG3Q9UJ98 1225 aa9.61□□□□□ -0.87
PTPN3-203ENST00000412145 BCL11AQ9H165 835 aa9.59□□□□□ -0.87
PTPN3-203ENST00000412145 CHGAP10645 457 aaKnown RBP9.58□□□□□ -0.88
PTPN3-203ENST00000412145 CFAP53Q96M91 514 aa9.58□□□□□ -0.88
PTPN3-203ENST00000412145 HAP1P54257 671 aaPredicted RBP9.57□□□□□ -0.88
PTPN3-203ENST00000412145 PNNQ9H307 717 aaKnown RBP9.56□□□□□ -0.88
PTPN3-203ENST00000412145 KIAA2012Q0VF49 1180 aa9.55□□□□□ -0.88
PTPN3-203ENST00000412145 NBR1Q14596 966 aa9.55□□□□□ -0.88
PTPN3-203ENST00000412145 SCRIBQ14160 1630 aa9.54□□□□□ -0.88
PTPN3-203ENST00000412145 CCDC34Q96HJ3 373 aa9.53□□□□□ -0.88
PTPN3-203ENST00000412145 MSNP26038 577 aaKnown RBP9.53□□□□□ -0.88
PTPN3-203ENST00000412145 EIF4G2P78344 907 aaKnown RBP eCLIP9.53□□□□□ -0.88
PTPN3-203ENST00000412145 NAP1L5Q96NT1 182 aaPredicted RBP9.52□□□□□ -0.88
PTPN3-203ENST00000412145 MRS2Q9HD23 443 aa9.52□□□□□ -0.88
PTPN3-203ENST00000412145 HTATSF1O43719 755 aaKnown RBP9.52□□□□□ -0.88
PTPN3-203ENST00000412145 CHMP7Q8WUX9 453 aaPredicted RBP9.52□□□□□ -0.89
PTPN3-203ENST00000412145 CHMP4AQ9BY43 222 aa9.51□□□□□ -0.89
PTPN3-203ENST00000412145 MCCP23508 829 aa9.51□□□□□ -0.89
PTPN3-203ENST00000412145 CSRNP3Q8WYN3 585 aa9.51□□□□□ -0.89
PTPN3-203ENST00000412145 RSF1Q96T23 1441 aaPredicted RBP9.5□□□□□ -0.89
PTPN3-203ENST00000412145 FAM9BQ8IZU0 186 aa9.5□□□□□ -0.89
PTPN3-203ENST00000412145 FTSJ3Q8IY81 847 aaKnown RBP9.49□□□□□ -0.89
PTPN3-203ENST00000412145 GOLGA6L4A6NEF3 574 aa9.49□□□□□ -0.89
PTPN3-203ENST00000412145 SYAP1Q96A49 352 aaPredicted RBP9.49□□□□□ -0.89
PTPN3-203ENST00000412145 EEA1Q15075 1411 aa9.49□□□□□ -0.89
PTPN3-203ENST00000412145 GOLGA6L1Q8N7Z2 621 aa9.48□□□□□ -0.89
PTPN3-203ENST00000412145 TSPY4P0CV99 314 aa9.47□□□□□ -0.89
PTPN3-203ENST00000412145 TSPY10P0CW01 314 aa9.47□□□□□ -0.89
PTPN3-203ENST00000412145 SETQ01105 290 aaPredicted RBP9.46□□□□□ -0.89
PTPN3-203ENST00000412145 TPM4P67936 248 aa9.46□□□□□ -0.9
PTPN3-203ENST00000412145 HSCBQ8IWL3 235 aa9.45□□□□□ -0.9
PTPN3-203ENST00000412145 NUDCQ9Y266 331 aa9.45□□□□□ -0.9
PTPN3-203ENST00000412145 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.45□□□□□ -0.94e-6■□□□□ 11.1
PTPN3-203ENST00000412145 TNNT3P45378 269 aaPredicted RBP9.44□□□□□ -0.9
PTPN3-203ENST00000412145 CSPP1Q1MSJ5 1256 aa9.44□□□□□ -0.9
PTPN3-203ENST00000412145 CHMP4CQ96CF2 233 aa9.43□□□□□ -0.9
PTPN3-203ENST00000412145 ARXQ96QS3 562 aa9.43□□□□□ -0.9
PTPN3-203ENST00000412145 NOP58Q9Y2X3 529 aaKnown RBP9.43□□□□□ -0.9
PTPN3-203ENST00000412145 HSP90AB1P08238 724 aaKnown RBP9.43□□□□□ -0.9
PTPN3-203ENST00000412145 GBP4Q96PP9 640 aa9.43□□□□□ -0.9
PTPN3-203ENST00000412145 FGD1P98174 961 aa9.43□□□□□ -0.9
PTPN3-203ENST00000412145 SCAF1Q9H7N4 1312 aaKnown RBP9.42□□□□□ -0.9
PTPN3-203ENST00000412145 KCNH8Q96L42 1107 aa9.42□□□□□ -0.9
PTPN3-203ENST00000412145 PPP4R2Q9NY27 417 aa9.42□□□□□ -0.9
PTPN3-203ENST00000412145 MAPK8IP3Q9UPT6 1336 aa9.42□□□□□ -0.9
PTPN3-203ENST00000412145 CCDC180Q9P1Z9 1646 aa9.42□□□□□ -0.9
PTPN3-203ENST00000412145 HDAC5Q9UQL6 1122 aa9.42□□□□□ -0.9
PTPN3-203ENST00000412145 KNSTRNQ9Y448 316 aa9.42□□□□□ -0.9
PTPN3-203ENST00000412145 NOC3LQ8WTT2 800 aaKnown RBP9.42□□□□□ -0.9
PTPN3-203ENST00000412145 MTUS2Q5JR59 1369 aa9.41□□□□□ -0.9
PTPN3-203ENST00000412145 TRHP20396 242 aaPredicted RBP9.41□□□□□ -0.9
PTPN3-203ENST00000412145 CALRP27797 417 aaKnown RBP9.4□□□□□ -0.9
PTPN3-203ENST00000412145 DDX10Q13206 875 aaKnown RBP9.4□□□□□ -0.9
PTPN3-203ENST00000412145 PHF14O94880 888 aa9.4□□□□□ -0.9
PTPN3-203ENST00000412145 SENP3Q9H4L4 574 aaPredicted RBP9.38□□□□□ -0.91
PTPN3-203ENST00000412145 PLEKHG5O94827 1062 aa9.38□□□□□ -0.91
PTPN3-203ENST00000412145 CALD1Q05682 793 aaKnown RBP9.38□□□□□ -0.91
PTPN3-203ENST00000412145 DRC7Q8IY82 874 aa9.37□□□□□ -0.91
PTPN3-203ENST00000412145 KCNJ4P48050 445 aa9.37□□□□□ -0.91
PTPN3-203ENST00000412145 GOLGA2Q08379 1002 aa9.37□□□□□ -0.91
PTPN3-203ENST00000412145 A0A0U1RQG5 324 aaPredicted RBP9.37□□□□□ -0.91
PTPN3-203ENST00000412145 A0A0G2JS52 829 aa9.37□□□□□ -0.91
PTPN3-203ENST00000412145 TIMELESSQ9UNS1 1208 aa9.37□□□□□ -0.91
PTPN3-203ENST00000412145 ANO8Q9HCE9 1232 aaPredicted RBP9.36□□□□□ -0.91
PTPN3-203ENST00000412145 CHIC2Q9UKJ5 165 aa9.36□□□□□ -0.91
PTPN3-203ENST00000412145 PPP1R15AO75807 674 aaPredicted RBP9.36□□□□□ -0.91
PTPN3-203ENST00000412145 GPS2Q13227 327 aa9.36□□□□□ -0.91
PTPN3-203ENST00000412145 KIF3AQ9Y496 699 aa9.35□□□□□ -0.91
PTPN3-203ENST00000412145 GNL2Q13823 731 aaKnown RBP9.34□□□□□ -0.91
PTPN3-203ENST00000412145 OS9Q13438 667 aaPredicted RBP9.34□□□□□ -0.91
PTPN3-203ENST00000412145 CCDC70Q6NSX1 233 aa9.34□□□□□ -0.91
PTPN3-203ENST00000412145 GOLGA6L3A6NEY3 463 aa9.33□□□□□ -0.92
PTPN3-203ENST00000412145 IPO8O15397 1037 aaKnown RBP9.33□□□□□ -0.92
PTPN3-203ENST00000412145 C14orf37Q86TY3 774 aa9.33□□□□□ -0.92
PTPN3-203ENST00000412145 PLCB2Q00722 1185 aa9.32□□□□□ -0.92
PTPN3-203ENST00000412145 KIAA1211Q6ZU35 1233 aa9.32□□□□□ -0.92
PTPN3-203ENST00000412145 HDGFP51858 240 aaKnown RBP9.32□□□□□ -0.92
PTPN3-203ENST00000412145 LAS1LQ9Y4W2 734 aaKnown RBP9.32□□□□□ -0.92
PTPN3-203ENST00000412145 ZBTB7CA1YPR0 619 aa9.31□□□□□ -0.92
PTPN3-203ENST00000412145 TPM3P06753 285 aa9.31□□□□□ -0.92
PTPN3-203ENST00000412145 ERCC6Q03468 1493 aa9.3□□□□□ -0.92
PTPN3-203ENST00000412145 CLIP1P30622 1438 aa9.3□□□□□ -0.92
PTPN3-203ENST00000412145 CEP89Q96ST8 783 aa9.3□□□□□ -0.92
PTPN3-203ENST00000412145 RSPH6AQ9H0K4 717 aa9.3□□□□□ -0.92
PTPN3-203ENST00000412145 GPATCH3Q96I76 525 aa9.3□□□□□ -0.92
PTPN3-203ENST00000412145 GOLGA3Q08378 1498 aa9.3□□□□□ -0.92
PTPN3-203ENST00000412145 RB1CC1Q8TDY2 1594 aa9.29□□□□□ -0.92
PTPN3-203ENST00000412145 PLEKHD1A6NEE1 506 aa9.28□□□□□ -0.92
PTPN3-203ENST00000412145 KDM2AQ9Y2K7 1162 aa9.28□□□□□ -0.92
PTPN3-203ENST00000412145 TCERG1O14776 1098 aaKnown RBP9.27□□□□□ -0.92
PTPN3-203ENST00000412145 NPHP1O15259 732 aa9.27□□□□□ -0.92
PTPN3-203ENST00000412145 CDR1P51861 262 aa9.27□□□□□ -0.92
PTPN3-203ENST00000412145 KANK1Q14678 1352 aa9.27□□□□□ -0.93
PTPN3-203ENST00000412145 PHLDB1Q86UU1 1377 aa9.27□□□□□ -0.93
PTPN3-203ENST00000412145 CCER2I3L3R5 266 aa9.27□□□□□ -0.93
PTPN3-203ENST00000412145 ATP6V1DQ9Y5K8 247 aa9.27□□□□□ -0.93
PTPN3-203ENST00000412145 CLSTN1O94985 981 aa9.27□□□□□ -0.93
PTPN3-203ENST00000412145 HMMRO75330 724 aa9.26□□□□□ -0.93
PTPN3-203ENST00000412145 SALL2Q9Y467 1007 aaPredicted RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms