RNA–Protein interactions for RNA: ENST00000311550.9

GABRB3-202, Transcript of gamma-aminobutyric acid type A receptor beta3 subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABRB3, Length 5,781 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRB3-202ENST00000311550 CCDC88BA6NC98 1476 aa23.31■■□□□ 1.32
GABRB3-202ENST00000311550 CHGAP10645 457 aaKnown RBP23.29■■□□□ 1.32
GABRB3-202ENST00000311550 TSPY4P0CV99 314 aa23.27■■□□□ 1.32
GABRB3-202ENST00000311550 TSPY10P0CW01 314 aa23.27■■□□□ 1.32
GABRB3-202ENST00000311550 SENP3-EIF4A1A0A087X0R7 540 aa23.26■■□□□ 1.31
GABRB3-202ENST00000311550 ZBTB47Q9UFB7 747 aaPredicted RBP23.26■■□□□ 1.31
GABRB3-202ENST00000311550 CHMP7Q8WUX9 453 aaPredicted RBP23.22■■□□□ 1.31
GABRB3-202ENST00000311550 CCNB3Q8WWL7 1395 aa23.21■■□□□ 1.31
GABRB3-202ENST00000311550 NEFMP07197 916 aa23.2■■□□□ 1.3
GABRB3-202ENST00000311550 NBR1Q14596 966 aa23.19■■□□□ 1.3
GABRB3-202ENST00000311550 KANK4Q5T7N3 995 aaPredicted RBP23.17■■□□□ 1.3
GABRB3-202ENST00000311550 SLC24A1O60721 1099 aa23.17■■□□□ 1.3
GABRB3-202ENST00000311550 VPS8Q8N3P4 1428 aa23.16■■□□□ 1.3
GABRB3-202ENST00000311550 SUPT16HQ9Y5B9 1047 aaKnown RBP23.16■■□□□ 1.3
GABRB3-202ENST00000311550 WIZO95785 1651 aa23.14■■□□□ 1.3
GABRB3-202ENST00000311550 WDR43Q15061 677 aaKnown RBP eCLIP23.09■■□□□ 1.29
GABRB3-202ENST00000311550 RGL3Q3MIN7 710 aa23.07■■□□□ 1.28
GABRB3-202ENST00000311550 CUX2O14529 1486 aa23.07■■□□□ 1.28
GABRB3-202ENST00000311550 CARMIL1Q5VZK9 1371 aa23.06■■□□□ 1.28
GABRB3-202ENST00000311550 CFDP1Q9UEE9 299 aaPredicted RBP23.04■■□□□ 1.28
GABRB3-202ENST00000311550 PLEKHD1A6NEE1 506 aa23.02■■□□□ 1.28
GABRB3-202ENST00000311550 KCNH8Q96L42 1107 aa23■■□□□ 1.27
GABRB3-202ENST00000311550 FHAD1B1AJZ9 1412 aa22.99■■□□□ 1.27
GABRB3-202ENST00000311550 STAG3Q9UJ98 1225 aa22.98■■□□□ 1.27
GABRB3-202ENST00000311550 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.97■■□□□ 1.27
GABRB3-202ENST00000311550 CARD11Q9BXL7 1154 aa22.95■■□□□ 1.26
GABRB3-202ENST00000311550 SETD5Q9C0A6 1442 aa22.95■■□□□ 1.26
GABRB3-202ENST00000311550 TOP2AP11388 1531 aaKnown RBP22.95■■□□□ 1.26
GABRB3-202ENST00000311550 UPF2Q9HAU5 1272 aaKnown RBP22.93■■□□□ 1.26
GABRB3-202ENST00000311550 SENP3Q9H4L4 574 aaPredicted RBP22.93■■□□□ 1.26
GABRB3-202ENST00000311550 NPM1P06748 294 aaKnown RBP eCLIP22.93■■□□□ 1.26
GABRB3-202ENST00000311550 ANP32EQ9BTT0 268 aa22.91■■□□□ 1.26
GABRB3-202ENST00000311550 RUSC2Q8N2Y8 1516 aa22.9■■□□□ 1.26
GABRB3-202ENST00000311550 RAB3GAP2Q9H2M9 1393 aa22.9■■□□□ 1.26
GABRB3-202ENST00000311550 HSP90AA1P07900 732 aaKnown RBP22.87■■□□□ 1.25
GABRB3-202ENST00000311550 ESF1Q9H501 851 aaKnown RBP22.85■■□□□ 1.25
GABRB3-202ENST00000311550 TIMELESSQ9UNS1 1208 aa22.84■■□□□ 1.25
GABRB3-202ENST00000311550 RAPGEF2Q9Y4G8 1499 aa22.83■■□□□ 1.25
GABRB3-202ENST00000311550 EIF4G1Q04637 1599 aaKnown RBP22.83■■□□□ 1.25
GABRB3-202ENST00000311550 PPP4R2Q9NY27 417 aa22.83■■□□□ 1.24
GABRB3-202ENST00000311550 FOXD1Q16676 465 aa22.82■■□□□ 1.24
GABRB3-202ENST00000311550 B4GALNT3Q6L9W6 998 aa22.82■■□□□ 1.24
GABRB3-202ENST00000311550 PLPPR3Q6T4P5 718 aa22.82■■□□□ 1.24
GABRB3-202ENST00000311550 ARHGAP35Q9NRY4 1499 aa22.82■■□□□ 1.24
GABRB3-202ENST00000311550 EIF5BO60841 1220 aaKnown RBP22.82■■□□□ 1.24
GABRB3-202ENST00000311550 ARXQ96QS3 562 aa22.81■■□□□ 1.24
GABRB3-202ENST00000311550 HSPA5P11021 654 aaKnown RBP22.8■■□□□ 1.24
GABRB3-202ENST00000311550 CCER2I3L3R5 266 aa22.78■■□□□ 1.24
GABRB3-202ENST00000311550 SMARCA2P51531 1590 aa22.78■■□□□ 1.24
GABRB3-202ENST00000311550 KNSTRNQ9Y448 316 aa22.75■■□□□ 1.23
GABRB3-202ENST00000311550 CC2D1BQ5T0F9 858 aaKnown RBP22.72■■□□□ 1.23
GABRB3-202ENST00000311550 DCAF11Q8TEB1 546 aa22.71■■□□□ 1.23
GABRB3-202ENST00000311550 PPP1R15AO75807 674 aaPredicted RBP22.69■■□□□ 1.22
GABRB3-202ENST00000311550 TDRD9Q8NDG6 1382 aaKnown RBP22.68■■□□□ 1.22
GABRB3-202ENST00000311550 DHX57Q6P158 1386 aaKnown RBP22.67■■□□□ 1.22
GABRB3-202ENST00000311550 SMARCA4P51532 1647 aa22.66■■□□□ 1.22
GABRB3-202ENST00000311550 NEUROD2Q15784 382 aa22.65■■□□□ 1.22
GABRB3-202ENST00000311550 RBM19Q9Y4C8 960 aaKnown RBP22.65■■□□□ 1.22
GABRB3-202ENST00000311550 ANP32BQ92688 251 aaKnown RBP22.64■■□□□ 1.21
GABRB3-202ENST00000311550 FHOD3Q2V2M9 1422 aa22.63■■□□□ 1.21
GABRB3-202ENST00000311550 CDCA8Q53HL2 280 aa22.62■■□□□ 1.21
GABRB3-202ENST00000311550 MPHOSPH9Q99550 1183 aa22.62■■□□□ 1.21
GABRB3-202ENST00000311550 DDRGK1Q96HY6 314 aa22.62■■□□□ 1.21
GABRB3-202ENST00000311550 PKD2Q13563 968 aa22.61■■□□□ 1.21
GABRB3-202ENST00000311550 ATAD2BQ9ULI0 1458 aa22.6■■□□□ 1.21
GABRB3-202ENST00000311550 LAS1LQ9Y4W2 734 aaKnown RBP22.59■■□□□ 1.21
GABRB3-202ENST00000311550 FMN1Q68DA7 1419 aa22.58■■□□□ 1.21
GABRB3-202ENST00000311550 TNNT2P45379 298 aaPredicted RBP22.57■■□□□ 1.2
GABRB3-202ENST00000311550 RGS3P49796 1198 aa22.57■■□□□ 1.2
GABRB3-202ENST00000311550 NOP58Q9Y2X3 529 aaKnown RBP22.57■■□□□ 1.2
GABRB3-202ENST00000311550 TSHZ2Q9NRE2 1034 aa22.56■■□□□ 1.2
GABRB3-202ENST00000311550 ERCC6Q03468 1493 aa22.55■■□□□ 1.2
GABRB3-202ENST00000311550 CFAP53Q96M91 514 aa22.53■■□□□ 1.2
GABRB3-202ENST00000311550 L3MBTL2Q969R5 705 aa22.53■■□□□ 1.2
GABRB3-202ENST00000311550 PPM1GO15355 546 aaPredicted RBP22.51■■□□□ 1.19
GABRB3-202ENST00000311550 BECN1Q14457 450 aa22.51■■□□□ 1.19
GABRB3-202ENST00000311550 FRAT1Q92837 279 aaPredicted RBP22.51■■□□□ 1.19
GABRB3-202ENST00000311550 TMF1P82094 1093 aa22.5■■□□□ 1.19
GABRB3-202ENST00000311550 MYH16Q9H6N6 1097 aa22.5■■□□□ 1.19
GABRB3-202ENST00000311550 CADPSQ9ULU8 1353 aa22.48■■□□□ 1.19
GABRB3-202ENST00000311550 FTSJ3Q8IY81 847 aaKnown RBP22.45■■□□□ 1.18
GABRB3-202ENST00000311550 NUP155O75694 1391 aa22.42■■□□□ 1.18
GABRB3-202ENST00000311550 PLEKHG5O94827 1062 aa22.41■■□□□ 1.18
GABRB3-202ENST00000311550 PDS5BQ9NTI5 1447 aa22.39■■□□□ 1.17
GABRB3-202ENST00000311550 MAPK8IP3Q9UPT6 1336 aa22.37■■□□□ 1.17
GABRB3-202ENST00000311550 KTN1Q86UP2 1357 aaKnown RBP22.36■■□□□ 1.17
GABRB3-202ENST00000311550 ROCK2O75116 1388 aaKnown RBP22.36■■□□□ 1.17
GABRB3-202ENST00000311550 U2SURPO15042 1029 aaKnown RBP22.35■■□□□ 1.17
GABRB3-202ENST00000311550 RTN4Q9NQC3 1192 aaKnown RBP22.35■■□□□ 1.17
GABRB3-202ENST00000311550 ZBTB7CA1YPR0 619 aa22.35■■□□□ 1.17
GABRB3-202ENST00000311550 POGKQ9P215 609 aa22.33■■□□□ 1.17
GABRB3-202ENST00000311550 RCAN3Q9UKA8 241 aa22.33■■□□□ 1.16
GABRB3-202ENST00000311550 C14orf37Q86TY3 774 aa22.33■■□□□ 1.16
GABRB3-202ENST00000311550 ANKRD30AQ9BXX3 1397 aa22.32■■□□□ 1.16
GABRB3-202ENST00000311550 NUDCQ9Y266 331 aa22.32■■□□□ 1.16
GABRB3-202ENST00000311550 ERICH6BQ5W0A0 696 aa22.32■■□□□ 1.16
GABRB3-202ENST00000311550 KIF21BO75037 1637 aa22.3■■□□□ 1.16
GABRB3-202ENST00000311550 HNRNPMP52272 730 aaKnown RBP eCLIP22.29■■□□□ 1.16
GABRB3-202ENST00000311550 CARMIL2Q6F5E8 1435 aa22.29■■□□□ 1.16
GABRB3-202ENST00000311550 SAFB2Q14151 953 aaKnown RBP eCLIP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms