RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 DDRGK1Q96HY6 314 aa15.74■□□□□ 0.11
SNIP1-201ENST00000296215 TAF7LQ5H9L4 462 aa15.74■□□□□ 0.11
SNIP1-201ENST00000296215 RBM10P98175 930 aaKnown RBP15.72■□□□□ 0.11
SNIP1-201ENST00000296215 HNRNPUQ00839 825 aaKnown RBP eCLIP15.72■□□□□ 0.11
SNIP1-201ENST00000296215 BCL11BQ9C0K0 894 aaPredicted RBP15.7■□□□□ 0.1
SNIP1-201ENST00000296215 USP35Q9P2H5 1018 aa15.7■□□□□ 0.1
SNIP1-201ENST00000296215 PPP4R2Q9NY27 417 aa15.67■□□□□ 0.1
SNIP1-201ENST00000296215 L1TD1Q5T7N2 865 aaKnown RBP15.66■□□□□ 0.1
SNIP1-201ENST00000296215 HAP1P54257 671 aaPredicted RBP15.66■□□□□ 0.1
SNIP1-201ENST00000296215 IPO9Q96P70 1041 aaKnown RBP15.65■□□□□ 0.1
SNIP1-201ENST00000296215 ARID3AQ99856 593 aa15.65■□□□□ 0.1
SNIP1-201ENST00000296215 PTMSP20962 102 aa15.64■□□□□ 0.09
SNIP1-201ENST00000296215 RRP9O43818 475 aaKnown RBP15.64■□□□□ 0.09
SNIP1-201ENST00000296215 APPP05067 770 aa15.63■□□□□ 0.09
SNIP1-201ENST00000296215 UBTFP17480 764 aaKnown RBP15.63■□□□□ 0.09
SNIP1-201ENST00000296215 GSE1Q14687 1217 aa15.63■□□□□ 0.09
SNIP1-201ENST00000296215 DNTTIP2Q5QJE6 756 aaKnown RBP15.63■□□□□ 0.09
SNIP1-201ENST00000296215 BRPF3Q9ULD4 1205 aa15.61■□□□□ 0.09
SNIP1-201ENST00000296215 BBXQ8WY36 941 aaPredicted RBP15.58■□□□□ 0.08
SNIP1-201ENST00000296215 PAXIP1Q6ZW49 1069 aaPredicted RBP15.58■□□□□ 0.08
SNIP1-201ENST00000296215 MYO15BQ96JP2 1530 aa15.57■□□□□ 0.08
SNIP1-201ENST00000296215 MSH5O43196 834 aa15.56■□□□□ 0.08
SNIP1-201ENST00000296215 DDX10Q13206 875 aaKnown RBP15.56■□□□□ 0.08
SNIP1-201ENST00000296215 FGD1P98174 961 aa15.56■□□□□ 0.08
SNIP1-201ENST00000296215 TNNT3P45378 269 aaPredicted RBP15.54■□□□□ 0.08
SNIP1-201ENST00000296215 B4GALNT3Q6L9W6 998 aa15.54■□□□□ 0.08
SNIP1-201ENST00000296215 FAM43AQ8N2R8 423 aa15.52■□□□□ 0.07
SNIP1-201ENST00000296215 KLHL34Q8N239 644 aa15.48■□□□□ 0.07
SNIP1-201ENST00000296215 MSNP26038 577 aaKnown RBP15.44■□□□□ 0.06
SNIP1-201ENST00000296215 NAP1L2Q9ULW6 460 aaPredicted RBP15.43■□□□□ 0.06
SNIP1-201ENST00000296215 C14orf37Q86TY3 774 aa15.41■□□□□ 0.06
SNIP1-201ENST00000296215 NCBP3Q53F19 620 aaKnown RBP15.4■□□□□ 0.06
SNIP1-201ENST00000296215 UPF2Q9HAU5 1272 aaKnown RBP15.4■□□□□ 0.06
SNIP1-201ENST00000296215 BECN1Q14457 450 aa15.4■□□□□ 0.06
SNIP1-201ENST00000296215 AAMPQ13685 434 aa15.39■□□□□ 0.05
SNIP1-201ENST00000296215 FAM13BQ9NYF5 915 aa15.38■□□□□ 0.05
SNIP1-201ENST00000296215 HOMEZQ8IX15 550 aa15.38■□□□□ 0.05
SNIP1-201ENST00000296215 MAP7D2Q96T17 732 aa15.36■□□□□ 0.05
SNIP1-201ENST00000296215 PAK3O75914 559 aaPredicted RBP15.35■□□□□ 0.05
SNIP1-201ENST00000296215 FAM9BQ8IZU0 186 aa15.35■□□□□ 0.05
SNIP1-201ENST00000296215 PATL2C9JE40 543 aaKnown RBP15.34■□□□□ 0.05
SNIP1-201ENST00000296215 CHMP4BQ9H444 224 aaKnown RBP15.34■□□□□ 0.05
SNIP1-201ENST00000296215 GOLGA6L3A6NEY3 463 aa15.34■□□□□ 0.05
SNIP1-201ENST00000296215 BRD2P25440 801 aaKnown RBP15.33■□□□□ 0.04
SNIP1-201ENST00000296215 TULP1O00294 542 aaPredicted RBP15.32■□□□□ 0.04
SNIP1-201ENST00000296215 TPM2P07951 284 aa15.3■□□□□ 0.04
SNIP1-201ENST00000296215 PTMAP06454 111 aaKnown RBP15.3■□□□□ 0.04
SNIP1-201ENST00000296215 RGS3P49796 1198 aa15.3■□□□□ 0.04
SNIP1-201ENST00000296215 MYH16Q9H6N6 1097 aa15.3■□□□□ 0.04
SNIP1-201ENST00000296215 FRAT1Q92837 279 aaPredicted RBP15.29■□□□□ 0.04
SNIP1-201ENST00000296215 PLCD3Q8N3E9 789 aa15.28■□□□□ 0.04
SNIP1-201ENST00000296215 DHX37Q8IY37 1157 aaKnown RBP15.28■□□□□ 0.04
SNIP1-201ENST00000296215 ZNF771Q7L3S4 317 aaPredicted RBP15.26■□□□□ 0.03
SNIP1-201ENST00000296215 MAPK8IP2Q13387 824 aaPredicted RBP15.25■□□□□ 0.03
SNIP1-201ENST00000296215 PDCL3Q9H2J4 239 aa15.25■□□□□ 0.03
SNIP1-201ENST00000296215 MTERF4Q7Z6M4 381 aaKnown RBP15.24■□□□□ 0.03
SNIP1-201ENST00000296215 GZF1Q9H116 711 aaPredicted RBP15.24■□□□□ 0.03
SNIP1-201ENST00000296215 ZHX1Q9UKY1 873 aaPredicted RBP15.22■□□□□ 0.03
SNIP1-201ENST00000296215 GOLGA6L22H0YM25 854 aa15.18■□□□□ 0.02
SNIP1-201ENST00000296215 AEBP1Q8IUX7 1158 aa15.18■□□□□ 0.02
SNIP1-201ENST00000296215 NFKBIBQ15653 356 aa15.18■□□□□ 0.02
SNIP1-201ENST00000296215 IRX3P78415 501 aaPredicted RBP15.16■□□□□ 0.02
SNIP1-201ENST00000296215 CHAF1AQ13111 956 aaPredicted RBP15.16■□□□□ 0.02
SNIP1-201ENST00000296215 TCERG1O14776 1098 aaKnown RBP15.15■□□□□ 0.02
SNIP1-201ENST00000296215 AEBP2Q6ZN18 517 aaPredicted RBP15.15■□□□□ 0.02
SNIP1-201ENST00000296215 MRS2Q9HD23 443 aa15.15■□□□□ 0.02
SNIP1-201ENST00000296215 C11orf95C9JLR9 678 aaPredicted RBP15.14■□□□□ 0.01
SNIP1-201ENST00000296215 TAF3Q5VWG9 929 aa15.13■□□□□ 0.01
SNIP1-201ENST00000296215 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.13■□□□□ 0.01
SNIP1-201ENST00000296215 CALD1Q05682 793 aaKnown RBP15.13■□□□□ 0.01
SNIP1-201ENST00000296215 E9PSI1 815 aa15.11■□□□□ 0.01
SNIP1-201ENST00000296215 CHMP4AQ9BY43 222 aa15.11■□□□□ 0.01
SNIP1-201ENST00000296215 ZBTB7CA1YPR0 619 aa15.09■□□□□ 0.01
SNIP1-201ENST00000296215 CCER2I3L3R5 266 aa15.09■□□□□ 0.01
SNIP1-201ENST00000296215 PRDM10Q9NQV6 1147 aa15.09■□□□□ 0.01
SNIP1-201ENST00000296215 IPO4Q8TEX9 1081 aaKnown RBP15.09■□□□□ 0.01
SNIP1-201ENST00000296215 FTSJ3Q8IY81 847 aaKnown RBP15.07■□□□□ 0
SNIP1-201ENST00000296215 SLC4A3P48751 1232 aa15.07■□□□□ 0
SNIP1-201ENST00000296215 SLKQ9H2G2 1235 aaPredicted RBP15.07■□□□□ 0
SNIP1-201ENST00000296215 KCNH8Q96L42 1107 aa15.07■□□□□ 0
SNIP1-201ENST00000296215 CCDC66A2RUB6 948 aa15.06■□□□□ 0
SNIP1-201ENST00000296215 WWC1Q8IX03 1113 aa15.06■□□□□ 0
SNIP1-201ENST00000296215 HSP90B1P14625 803 aaKnown RBP15.04■□□□□ -0
SNIP1-201ENST00000296215 R3HCC1Q9Y3T6 440 aaKnown RBP15.04■□□□□ -0
SNIP1-201ENST00000296215 CALRP27797 417 aaKnown RBP15.04■□□□□ -0
SNIP1-201ENST00000296215 HIRIP3Q9BW71 556 aaPredicted RBP15.04■□□□□ -0
SNIP1-201ENST00000296215 KIAA1211Q6ZU35 1233 aa15.03■□□□□ -0
SNIP1-201ENST00000296215 CC2D1BQ5T0F9 858 aaKnown RBP15.03■□□□□ -0
SNIP1-201ENST00000296215 VGLL3A8MV65 326 aa15.03■□□□□ -0
SNIP1-201ENST00000296215 ATP1B4Q9UN42 357 aaPredicted RBP15.02□□□□□ -0.01
SNIP1-201ENST00000296215 PDE4AP27815 886 aa15.01□□□□□ -0.01
SNIP1-201ENST00000296215 GOLGA6L6A8MZA4 724 aa15□□□□□ -0.01
SNIP1-201ENST00000296215 CGNQ9P2M7 1197 aaKnown RBP15□□□□□ -0.01
SNIP1-201ENST00000296215 KIAA2012Q0VF49 1180 aa14.99□□□□□ -0.01
SNIP1-201ENST00000296215 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.98□□□□□ -0.01
SNIP1-201ENST00000296215 ESPNB1AK53 854 aa14.97□□□□□ -0.01
SNIP1-201ENST00000296215 CCDC9Q9Y3X0 531 aaKnown RBP14.96□□□□□ -0.01
SNIP1-201ENST00000296215 CSPP1Q1MSJ5 1256 aa14.96□□□□□ -0.02
SNIP1-201ENST00000296215 GOLGA6L1Q8N7Z2 621 aa14.96□□□□□ -0.02
SNIP1-201ENST00000296215 CLGNO14967 610 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms