RNA–Protein interactions for RNA: ENST00000261866.11

SPG11-201, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SPG11, Length 7,774 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-201ENST00000261866 PPM1GO15355 546 aaPredicted RBP16.38■□□□□ 0.21
SPG11-201ENST00000261866 TRHP20396 242 aaPredicted RBP16.37■□□□□ 0.21
SPG11-201ENST00000261866 LMOD2Q6P5Q4 547 aa16.36■□□□□ 0.21
SPG11-201ENST00000261866 TPRNQ4KMQ1 711 aa16.35■□□□□ 0.21
SPG11-201ENST00000261866 ACIN1Q9UKV3 1341 aaKnown RBP16.33■□□□□ 0.2
SPG11-201ENST00000261866 MRS2Q9HD23 443 aa16.33■□□□□ 0.2
SPG11-201ENST00000261866 NBR1Q14596 966 aa16.31■□□□□ 0.2
SPG11-201ENST00000261866 MLECQ14165 292 aa16.3■□□□□ 0.2
SPG11-201ENST00000261866 TAOK2Q9UL54 1235 aa16.3■□□□□ 0.2
SPG11-201ENST00000261866 PLEKHD1A6NEE1 506 aa16.3■□□□□ 0.2
SPG11-201ENST00000261866 NCBP3Q53F19 620 aaKnown RBP16.28■□□□□ 0.2
SPG11-201ENST00000261866 ERCC6Q03468 1493 aa16.28■□□□□ 0.2
SPG11-201ENST00000261866 UPF2Q9HAU5 1272 aaKnown RBP16.26■□□□□ 0.19
SPG11-201ENST00000261866 CCDC136Q96JN2 1154 aa16.25■□□□□ 0.19
SPG11-201ENST00000261866 TNNT2P45379 298 aaPredicted RBP16.25■□□□□ 0.19
SPG11-201ENST00000261866 ANP32BQ92688 251 aaKnown RBP16.25■□□□□ 0.19
SPG11-201ENST00000261866 ZCCHC6Q5VYS8 1495 aaKnown RBP16.25■□□□□ 0.19
SPG11-201ENST00000261866 LAS1LQ9Y4W2 734 aaKnown RBP16.23■□□□□ 0.19
SPG11-201ENST00000261866 NEUROD2Q15784 382 aa16.22■□□□□ 0.19
SPG11-201ENST00000261866 CLIP1P30622 1438 aa16.22■□□□□ 0.19
SPG11-201ENST00000261866 SOX12O15370 315 aa16.21■□□□□ 0.18
SPG11-201ENST00000261866 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.2■□□□□ 0.18
SPG11-201ENST00000261866 CFDP1Q9UEE9 299 aaPredicted RBP16.2■□□□□ 0.18
SPG11-201ENST00000261866 MYH16Q9H6N6 1097 aa16.16■□□□□ 0.18
SPG11-201ENST00000261866 MIER1Q8N108 512 aa16.16■□□□□ 0.18
SPG11-201ENST00000261866 RB1CC1Q8TDY2 1594 aa16.15■□□□□ 0.18
SPG11-201ENST00000261866 CDK11BP21127 795 aaKnown RBP16.14■□□□□ 0.18
SPG11-201ENST00000261866 EIF4G2P78344 907 aaKnown RBP eCLIP16.14■□□□□ 0.17
SPG11-201ENST00000261866 SAFB2Q14151 953 aaKnown RBP eCLIP16.13■□□□□ 0.17
SPG11-201ENST00000261866 NPHP1O15259 732 aa16.13■□□□□ 0.17
SPG11-201ENST00000261866 POGKQ9P215 609 aa16.13■□□□□ 0.17
SPG11-201ENST00000261866 EIF4G1Q04637 1599 aaKnown RBP16.11■□□□□ 0.17
SPG11-201ENST00000261866 BAZ1BQ9UIG0 1483 aaKnown RBP16.11■□□□□ 0.17
SPG11-201ENST00000261866 CC2D1BQ5T0F9 858 aaKnown RBP16.09■□□□□ 0.17
SPG11-201ENST00000261866 CARD11Q9BXL7 1154 aa16.09■□□□□ 0.17
SPG11-201ENST00000261866 SIN3AQ96ST3 1273 aa16.07■□□□□ 0.16
SPG11-201ENST00000261866 KNSTRNQ9Y448 316 aa16.06■□□□□ 0.16
SPG11-201ENST00000261866 RSF1Q96T23 1441 aaPredicted RBP16.04■□□□□ 0.16
SPG11-201ENST00000261866 MYO15BQ96JP2 1530 aa16.03■□□□□ 0.16
SPG11-201ENST00000261866 CEP162Q5TB80 1403 aa16.03■□□□□ 0.16
SPG11-201ENST00000261866 U2SURPO15042 1029 aaKnown RBP16.02■□□□□ 0.15
SPG11-201ENST00000261866 AMER1Q5JTC6 1135 aaPredicted RBP16.01■□□□□ 0.15
SPG11-201ENST00000261866 CFAP53Q96M91 514 aa16.01■□□□□ 0.15
SPG11-201ENST00000261866 WRNQ14191 1432 aaPredicted RBP eCLIP16.01■□□□□ 0.15
SPG11-201ENST00000261866 STK26Q9P289 416 aa16■□□□□ 0.15
SPG11-201ENST00000261866 GOLGA3Q08378 1498 aa15.99■□□□□ 0.15
SPG11-201ENST00000261866 GGT6Q6P531 493 aa15.99■□□□□ 0.15
SPG11-201ENST00000261866 FRAT1Q92837 279 aaPredicted RBP15.98■□□□□ 0.15
SPG11-201ENST00000261866 FTSJ3Q8IY81 847 aaKnown RBP15.97■□□□□ 0.15
SPG11-201ENST00000261866 DCAF1Q9Y4B6 1507 aa15.96■□□□□ 0.15
SPG11-201ENST00000261866 MAPK8IP3Q9UPT6 1336 aa15.96■□□□□ 0.15
SPG11-201ENST00000261866 NCLP19338 710 aaKnown RBP15.95■□□□□ 0.14
SPG11-201ENST00000261866 FOXD1Q16676 465 aa15.94■□□□□ 0.14
SPG11-201ENST00000261866 DCAF11Q8TEB1 546 aa15.94■□□□□ 0.14
SPG11-201ENST00000261866 KIF27Q86VH2 1401 aa15.94■□□□□ 0.14
SPG11-201ENST00000261866 CCDC180Q9P1Z9 1646 aa15.94■□□□□ 0.14
SPG11-201ENST00000261866 SRPK2P78362 688 aaKnown RBP15.93■□□□□ 0.14
SPG11-201ENST00000261866 NUTM2DQ5VT03 806 aaPredicted RBP15.92■□□□□ 0.14
SPG11-201ENST00000261866 PAK3O75914 559 aaPredicted RBP15.92■□□□□ 0.14
SPG11-201ENST00000261866 OS9Q13438 667 aaPredicted RBP15.9■□□□□ 0.14
SPG11-201ENST00000261866 CCNB3Q8WWL7 1395 aa15.9■□□□□ 0.14
SPG11-201ENST00000261866 SUPT16HQ9Y5B9 1047 aaKnown RBP15.9■□□□□ 0.14
SPG11-201ENST00000261866 NAP1L2Q9ULW6 460 aaPredicted RBP15.88■□□□□ 0.13
SPG11-201ENST00000261866 ZNF330Q9Y3S2 320 aaPredicted RBP15.88■□□□□ 0.13
SPG11-201ENST00000261866 RGS3P49796 1198 aa15.88■□□□□ 0.13
SPG11-201ENST00000261866 CDCA8Q53HL2 280 aa15.86■□□□□ 0.13
SPG11-201ENST00000261866 NUDCQ9Y266 331 aa15.85■□□□□ 0.13
SPG11-201ENST00000261866 CLSTN1O94985 981 aa15.84■□□□□ 0.13
SPG11-201ENST00000261866 CUX2O14529 1486 aa15.84■□□□□ 0.13
SPG11-201ENST00000261866 CCDC9Q9Y3X0 531 aaKnown RBP15.83■□□□□ 0.12
SPG11-201ENST00000261866 GOLGA2Q08379 1002 aa15.82■□□□□ 0.12
SPG11-201ENST00000261866 CECR2Q9BXF3 1484 aa15.81■□□□□ 0.12
SPG11-201ENST00000261866 APBB1O00213 710 aa15.8■□□□□ 0.12
SPG11-201ENST00000261866 PLCB2Q00722 1185 aa15.8■□□□□ 0.12
SPG11-201ENST00000261866 NUTM2FA1L443 756 aa15.8■□□□□ 0.12
SPG11-201ENST00000261866 KANK1Q14678 1352 aa15.8■□□□□ 0.12
SPG11-201ENST00000261866 ISY1Q9ULR0 285 aaKnown RBP15.8■□□□□ 0.12
SPG11-201ENST00000261866 CASC1Q6TDU7 716 aa15.8■□□□□ 0.12
SPG11-201ENST00000261866 CSB-PGBD3P0DP91 1061 aa15.79■□□□□ 0.12
SPG11-201ENST00000261866 CARMIL1Q5VZK9 1371 aa15.78■□□□□ 0.12
SPG11-201ENST00000261866 SOGA1O94964 1423 aa15.77■□□□□ 0.12
SPG11-201ENST00000261866 RTN4Q9NQC3 1192 aaKnown RBP15.77■□□□□ 0.12
SPG11-201ENST00000261866 CEP164Q9UPV0 1460 aa15.77■□□□□ 0.12
SPG11-201ENST00000261866 GLIPR1L2Q4G1C9 344 aa15.76■□□□□ 0.11
SPG11-201ENST00000261866 MORC1Q86VD1 984 aa15.76■□□□□ 0.11
SPG11-201ENST00000261866 BECN1Q14457 450 aa15.76■□□□□ 0.11
SPG11-201ENST00000261866 NACADO15069 1562 aa15.76■□□□□ 0.11
SPG11-201ENST00000261866 FGD1P98174 961 aa15.76■□□□□ 0.11
SPG11-201ENST00000261866 TMF1P82094 1093 aa15.75■□□□□ 0.11
SPG11-201ENST00000261866 DNTTIP2Q5QJE6 756 aaKnown RBP15.75■□□□□ 0.11
SPG11-201ENST00000261866 ANO8Q9HCE9 1232 aaPredicted RBP15.75■□□□□ 0.11
SPG11-201ENST00000261866 KCNJ4P48050 445 aa15.75■□□□□ 0.11
SPG11-201ENST00000261866 SPRYD3Q8NCJ5 442 aa15.75■□□□□ 0.11
SPG11-201ENST00000261866 TDRD9Q8NDG6 1382 aaKnown RBP15.74■□□□□ 0.11
SPG11-201ENST00000261866 ZRSR1Q15695 479 aaKnown RBP15.74■□□□□ 0.11
SPG11-201ENST00000261866 EEA1Q15075 1411 aa15.73■□□□□ 0.11
SPG11-201ENST00000261866 PKD2Q13563 968 aa15.73■□□□□ 0.11
SPG11-201ENST00000261866 PTMAP06454 111 aaKnown RBP15.73■□□□□ 0.11
SPG11-201ENST00000261866 TRIM44Q96DX7 344 aaPredicted RBP15.71■□□□□ 0.1
SPG11-201ENST00000261866 TNIKQ9UKE5 1360 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms