RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SDF2Q99470 211 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 AGPAT4-IT1Q9H0P7 198 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 SCN3BQ9NY72 215 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 ATPIF1Q9UII2 106 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 SPCS1Q9Y6A9 102 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 PLXNA2O75051 1894 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 FER1L6Q2WGJ9 1857 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 ANKRD31Q8N7Z5 1873 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 NUP210Q8TEM1 1887 aaPredicted RBP-0.4□□□□□ -2.47
VPS35-212ENST00000640313 OVOS2A0A0G2JMS6 1433 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 ZNF142P52746 1687 aaPredicted RBP-0.4□□□□□ -2.47
VPS35-212ENST00000640313 SYNMO15061 1565 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 ANKRD11Q6UB99 2663 aaPredicted RBP-0.41□□□□□ -2.47
VPS35-212ENST00000640313 NBEAQ8NFP9 2946 aa-0.41□□□□□ -2.47
VPS35-212ENST00000640313 ERCC6Q03468 1493 aa-0.41□□□□□ -2.47
VPS35-212ENST00000640313 ARHGEF10O15013 1369 aa-0.41□□□□□ -2.47
VPS35-212ENST00000640313 LAMA2P24043 3122 aaKnown RBP-0.41□□□□□ -2.47
VPS35-212ENST00000640313 ZCCHC11Q5TAX3 1644 aaKnown RBP-0.41□□□□□ -2.47
VPS35-212ENST00000640313 TEX15Q9BXT5 2789 aa-0.41□□□□□ -2.47
VPS35-212ENST00000640313 TRAV36DV7A0A075B6V5 113 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 TRBV6-1A0A0K0K1D8 114 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 FAM236AA0A1B0GUQ0 79 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 FAM236BA0A1B0GV22 79 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 J3QLW9 94 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 SMIM24O75264 130 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 E2F6O75461 281 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 DPM2O94777 84 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 PIRTP0C851 137 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 COX6B1P14854 86 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 CFAP126Q5VTH2 177 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 TRIQKQ629K1 86 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 PPP1R2P3Q6NXS1 205 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 ZNF818PQ6ZRF7 136 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 DEFB123Q8N688 67 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 TMEM35BQ8NCS4 154 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 VSTM2AQ8TAG5 236 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 AMELXQ99217 191 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 DDA1Q9BW61 102 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 BANF2Q9H503 90 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 HIGD1AQ9Y241 93 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 LINC00312Q9Y6C7 94 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 MYH1P12882 1939 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 ZNF609O15014 1411 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 PHIPQ8WWQ0 1821 aa-0.41□□□□□ -2.48
VPS35-212ENST00000640313 DSPP15924 2871 aaKnown RBP-0.41□□□□□ -2.48
VPS35-212ENST00000640313 TEP1Q99973 2627 aaKnown RBP-0.41□□□□□ -2.48
VPS35-212ENST00000640313 LRP6O75581 1613 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 UTP20O75691 2785 aaKnown RBP-0.42□□□□□ -2.48
VPS35-212ENST00000640313 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.42□□□□□ -2.48
VPS35-212ENST00000640313 KIF13AQ9H1H9 1805 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 BORCS7-ASMTA0A0B4J1R7 106 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 LOC730098B7Z3J9 87 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 E5RI56 91 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 APOC4-APOC2K7ER74 178 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 M0R135 149 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 YPEL1O60688 119 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 PFDN1O60925 122 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 FABP1P07148 127 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 NBEAP1P0C6P0 100 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 DCDP81605 110 aaKnown RBP-0.42□□□□□ -2.48
VPS35-212ENST00000640313 KLK9Q2XQG4 91 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 SPANXN1Q5VSR9 72 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 SAMD13Q5VXD3 122 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 TCTE3Q8IZS6 198 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 OR8I2Q8N0Y5 310 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 SAR1AQ9NR31 198 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 RPRMQ9NS64 109 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 CALML5Q9NZT1 146 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 SPTBN4Q9H254 2564 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 SYNJ1O43426 1573 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 KNL1Q8NG31 2342 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 MUC22E2RYF6 1773 aaPredicted RBP-0.42□□□□□ -2.48
VPS35-212ENST00000640313 NBASA2RRP1 2371 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 TRRAPQ9Y4A5 3859 aa-0.42□□□□□ -2.48
VPS35-212ENST00000640313 PLXNB2O15031 1838 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.43□□□□□ -2.48
VPS35-212ENST00000640313 NRXN2Q9P2S2 1712 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 BICRAQ9NZM4 1560 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 CASKIN1Q8WXD9 1431 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 FXYD6-FXYD2A0A087WZ82 144 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 FAM92AA1XBS5 289 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 HCG22E2RYF7 251 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 M0R129 80 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 NPFFO15130 113 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 SPINK4O60575 86 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 SIX6O95475 246 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 IFNA17P01571 189 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 RBP4P02753 201 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 MT1AP04731 61 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 TSPAN19P0C672 248 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 IGLC6P0CF74 106 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 CBLN1P23435 193 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 CMPK1P30085 196 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 CCL8P80075 99 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 ALX1Q15699 326 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 PIGYQ3MUY2 71 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 MORN2Q502X0 79 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 SPTSSBQ8NFR3 76 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 SPRR2FQ96RM1 72 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 CENPHQ9H3R5 247 aa-0.43□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms