RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CUBNO60494 3623 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 M0R3E3 92 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 OVOL1O14753 267 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 MSMBP08118 114 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 HOXD3P31249 432 aaPredicted RBP3.94□□□□□ -1.78
USP28-213ENST00000544967 FAM222AQ5U5X8 452 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 HCP5Q6MZN7 132 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 C2orf82Q6UX34 121 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 MSRB1Q9NZV6 116 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 ZFHX3Q15911 3703 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 C2CD3Q4AC94 2353 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 TMSB15BA0A087X1C1 80 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 IGKV3D-20A0A0C4DH25 116 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 IGHV1-3A0A0C4DH29 117 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 TRBV6-5A0A0K0K1A5 114 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 TMEM223A0PJW6 202 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 J3QQQ9 107 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 ZFP36P26651 326 aaKnown RBP3.94□□□□□ -1.78
USP28-213ENST00000544967 EMP1P54849 157 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 SVEP1Q4LDE5 3571 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 H7C423 109 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 GAS8-AS1O95177 125 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 LGALS3P17931 250 aaKnown RBP3.94□□□□□ -1.78
USP28-213ENST00000544967 DNAH3Q8TD57 4116 aa3.94□□□□□ -1.78
USP28-213ENST00000544967 CADP27708 2225 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 IGLV11-55A0A075B6I3 123 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 IGKV2-40A0A087WW87 121 aaPredicted RBP3.93□□□□□ -1.78
USP28-213ENST00000544967 IGHV3-64DA0A0J9YX35 117 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 IGKV2D-40P01614 121 aaPredicted RBP3.93□□□□□ -1.78
USP28-213ENST00000544967 UBE2E1P51965 193 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 RHOHQ15669 191 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 NPBQ8NG41 125 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 UBE2E2Q96LR5 201 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 HIVEP1P15822 2718 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 TEX49A0A1B0GTD5 131 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 LY6HO94772 140 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 CRIP2P52943 208 aaPredicted RBP3.93□□□□□ -1.78
USP28-213ENST00000544967 SPTBN1Q01082 2364 aaKnown RBP3.93□□□□□ -1.78
USP28-213ENST00000544967 NSD1Q96L73 2696 aaPredicted RBP3.93□□□□□ -1.78
USP28-213ENST00000544967 C2orf48Q96LS8 159 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 TEP1Q99973 2627 aaKnown RBP3.93□□□□□ -1.78
USP28-213ENST00000544967 PKDREJQ9NTG1 2253 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 FAM236AA0A1B0GUQ0 79 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 FAM236BA0A1B0GV22 79 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 LY6LH3BQJ8 138 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 K7EMT4 169 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 EIF4EBP3O60516 100 aaPredicted RBP3.93□□□□□ -1.78
USP28-213ENST00000544967 LY6G6DO95868 133 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 IGLV1-47P01700 117 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 ZNF22P17026 224 aaPredicted RBP3.93□□□□□ -1.78
USP28-213ENST00000544967 LYPD2Q6UXB3 125 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 DCANP1Q8TF63 244 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 CCL13Q99616 98 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 CHCHD5Q9BSY4 110 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 ZNF580Q9UK33 172 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 ICOSQ9Y6W8 199 aa3.93□□□□□ -1.78
USP28-213ENST00000544967 IGHV3-48P01763 117 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 TRGV3P03979 118 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 IGHV1-8P0DP01 117 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 ZNF56Q15929 161 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 NSUN5P1Q3KNT7 163 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 TRPT1Q86TN4 253 aaKnown RBP3.92□□□□□ -1.78
USP28-213ENST00000544967 TRIAP1O43715 76 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 POLR2KP53803 58 aaKnown RBP3.92□□□□□ -1.78
USP28-213ENST00000544967 GAGE2AQ6NT46 116 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 HRCT1Q6UXD1 115 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 Q6ZS46 218 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 COPS9Q8WXC6 57 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 ZNF256Q9Y2P7 627 aaPredicted RBP3.92□□□□□ -1.78
USP28-213ENST00000544967 SMAD5-AS1Q9Y6J3 95 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 MYO9AB2RTY4 2548 aa3.92□□□□□ -1.78
USP28-213ENST00000544967 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.92□□□□□ -1.78
USP28-213ENST00000544967 TRGV11A0A075B6L2 103 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 LYNX1G3V0Z9 82 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 NDUFB3O43676 98 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 TSHBP01222 138 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 LYNX1P0DP58 116 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 SPANXN1Q5VSR9 72 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 F8W735 103 aaPredicted RBP3.91□□□□□ -1.78
USP28-213ENST00000544967 BCE1O60756 84 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 TRACP01848 142 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 INAFM2P0DMQ5 153 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 TSPEAR-AS2P59090 65 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 GPHB5Q86YW7 130 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 DYNAPQ8N1N2 210 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 CCL17Q92583 94 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 EDA2RQ9HAV5 297 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 TRBV27A0A0K0K1C4 114 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 CNTFRP26992 372 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 DLX1P56177 255 aa3.91□□□□□ -1.78
USP28-213ENST00000544967 OOSP1A8MZH6 123 aa3.9□□□□□ -1.78
USP28-213ENST00000544967 EPM2AB3EWF7 344 aa3.9□□□□□ -1.78
USP28-213ENST00000544967 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.9□□□□□ -1.78
USP28-213ENST00000544967 MUSTN1Q8IVN3 82 aa3.9□□□□□ -1.78
USP28-213ENST00000544967 LITAFQ99732 161 aa3.9□□□□□ -1.78
USP28-213ENST00000544967 BUB1B-PAK6H3BSN5 160 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 Q8N2B8 174 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 KLHL30-AS1Q8NEE0 82 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 Q8TAT8 98 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 OVOL2Q9BRP0 275 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms