RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 DEFB133Q30KQ1 61 aa6.55□□□□□ -1.36
VPS13D-212ENST00000543766 RPP21Q9H633 154 aaKnown RBP6.55□□□□□ -1.36
VPS13D-212ENST00000543766 LINC01546A6NGU7 62 aa6.55□□□□□ -1.36
VPS13D-212ENST00000543766 LINC00473A8K010 186 aa6.55□□□□□ -1.36
VPS13D-212ENST00000543766 M0R1W7 72 aa6.55□□□□□ -1.36
VPS13D-212ENST00000543766 PIEZO2Q9H5I5 2752 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 PATE3B3GLJ2 98 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 CD28P10747 220 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 TMEM141Q96I45 108 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 EPM2AB3EWF7 344 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 TRIAP1O43715 76 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 IGHV3-33P01772 117 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 ZNF32P17041 273 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 C8orf49Q96NF6 230 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 CTSZQ9UBR2 303 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 IGKV1OR2-108A0A075B7D4 117 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 A0A1B0GUT8 65 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 DIRC1Q969H9 104 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 COL12A1Q99715 3063 aa6.54□□□□□ -1.36
VPS13D-212ENST00000543766 DOPEY2Q9Y3R5 2298 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 USF3Q68DE3 2245 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 A0A0J9YXV3 536 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 C19orf54Q5BKX5 351 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 CACNA1AO00555 2505 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 RNF223E7ERA6 249 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 LEPROTO15243 131 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 IGHV1-8P0DP01 117 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 ENHOQ6UWT2 76 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 ABCA1O95477 2261 aa6.53□□□□□ -1.36
VPS13D-212ENST00000543766 AKAP13Q12802 2813 aa6.52□□□□□ -1.36
VPS13D-212ENST00000543766 SPINK2P20155 84 aa6.52□□□□□ -1.37
VPS13D-212ENST00000543766 MYO18BQ8IUG5 2567 aa6.52□□□□□ -1.37
VPS13D-212ENST00000543766 ATRXP46100 2492 aa6.52□□□□□ -1.37
VPS13D-212ENST00000543766 PROP1O75360 226 aa6.52□□□□□ -1.37
VPS13D-212ENST00000543766 MRPL51Q4U2R6 128 aaKnown RBP6.52□□□□□ -1.37
VPS13D-212ENST00000543766 LY6G6EA0A0G2JKS1 128 aa6.52□□□□□ -1.37
VPS13D-212ENST00000543766 NDUFC1O43677 76 aa6.52□□□□□ -1.37
VPS13D-212ENST00000543766 SCXQ7RTU7 201 aa6.52□□□□□ -1.37
VPS13D-212ENST00000543766 U3KQA8 63 aa6.52□□□□□ -1.37
VPS13D-212ENST00000543766 COL27A1Q8IZC6 1860 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-212ENST00000543766 MGAQ8IWI9 3026 aa6.51□□□□□ -1.37
VPS13D-212ENST00000543766 MIFP14174 115 aa6.51□□□□□ -1.37
VPS13D-212ENST00000543766 PLNP26678 52 aa6.51□□□□□ -1.37
VPS13D-212ENST00000543766 SYCNQ0VAF6 134 aa6.51□□□□□ -1.37
VPS13D-212ENST00000543766 Q9HAA7 133 aa6.51□□□□□ -1.37
VPS13D-212ENST00000543766 MED13LQ71F56 2210 aa6.51□□□□□ -1.37
VPS13D-212ENST00000543766 LINC01600Q96MT4 127 aa6.51□□□□□ -1.37
VPS13D-212ENST00000543766 PATE4P0C8F1 98 aa6.5□□□□□ -1.37
VPS13D-212ENST00000543766 CXCL6P80162 114 aa6.5□□□□□ -1.37
VPS13D-212ENST00000543766 ARMS2P0C7Q2 107 aa6.5□□□□□ -1.37
VPS13D-212ENST00000543766 MAP6D1Q9H9H5 199 aa6.5□□□□□ -1.37
VPS13D-212ENST00000543766 ICOSQ9Y6W8 199 aa6.5□□□□□ -1.37
VPS13D-212ENST00000543766 TRAV7A0A075B6U4 112 aa6.5□□□□□ -1.37
VPS13D-212ENST00000543766 IGHV1OR15-1A0A075B7D0 117 aa6.5□□□□□ -1.37
VPS13D-212ENST00000543766 LY6HO94772 140 aa6.5□□□□□ -1.37
VPS13D-212ENST00000543766 ADAMTSL4-AS1Q5T5F5 129 aa6.5□□□□□ -1.37
VPS13D-212ENST00000543766 ATP11AUNQ6ZP68 121 aa6.49□□□□□ -1.37
VPS13D-212ENST00000543766 TMEM14BQ9NUH8 114 aa6.49□□□□□ -1.37
VPS13D-212ENST00000543766 TRAV22A0A0B4J277 110 aa6.49□□□□□ -1.37
VPS13D-212ENST00000543766 RPL28P46779 137 aaKnown RBP6.49□□□□□ -1.37
VPS13D-212ENST00000543766 CHD6Q8TD26 2715 aa6.49□□□□□ -1.37
VPS13D-212ENST00000543766 TRBV6-1A0A0K0K1D8 114 aa6.48□□□□□ -1.37
VPS13D-212ENST00000543766 SDHAF1A6NFY7 115 aa6.48□□□□□ -1.37
VPS13D-212ENST00000543766 CSMD1Q96PZ7 3565 aa6.48□□□□□ -1.37
VPS13D-212ENST00000543766 IGHV3-15A0A0B4J1V0 119 aa6.48□□□□□ -1.37
VPS13D-212ENST00000543766 MED14OSP0DP75 135 aa6.48□□□□□ -1.37
VPS13D-212ENST00000543766 Q6JHZ5 121 aa6.48□□□□□ -1.37
VPS13D-212ENST00000543766 C14orf132Q9NPU4 83 aa6.48□□□□□ -1.37
VPS13D-212ENST00000543766 PRR4Q16378 134 aa6.48□□□□□ -1.37
VPS13D-212ENST00000543766 PHF5AQ7RTV0 110 aaKnown RBP6.48□□□□□ -1.37
VPS13D-212ENST00000543766 UBE2D4Q9Y2X8 147 aa6.48□□□□□ -1.37
VPS13D-212ENST00000543766 SVEP1Q4LDE5 3571 aa6.47□□□□□ -1.37
VPS13D-212ENST00000543766 NTN3O00634 580 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-212ENST00000543766 PTPRQQ9UMZ3 2332 aa6.47□□□□□ -1.37
VPS13D-212ENST00000543766 SPTAN1Q13813 2472 aaKnown RBP6.47□□□□□ -1.37
VPS13D-212ENST00000543766 IGHV6-1A0A0B4J1U7 121 aa6.47□□□□□ -1.37
VPS13D-212ENST00000543766 PATE2Q6UY27 113 aa6.47□□□□□ -1.37
VPS13D-212ENST00000543766 SND1-IT1Q9HBX3 110 aa6.47□□□□□ -1.37
VPS13D-212ENST00000543766 C16orf90A8MZG2 172 aa6.47□□□□□ -1.37
VPS13D-212ENST00000543766 IGLV2-11P01706 119 aa6.47□□□□□ -1.37
VPS13D-212ENST00000543766 FLNBO75369 2602 aaKnown RBP6.47□□□□□ -1.37
VPS13D-212ENST00000543766 IGHV3-64A0A075B6Q5 118 aa6.46□□□□□ -1.37
VPS13D-212ENST00000543766 ZNRF1Q8ND25 227 aa6.46□□□□□ -1.37
VPS13D-212ENST00000543766 IGHV3-20A0A0C4DH32 117 aa6.46□□□□□ -1.38
VPS13D-212ENST00000543766 Q6ZS46 218 aa6.46□□□□□ -1.38
VPS13D-212ENST00000543766 DSCAMO60469 2012 aa6.46□□□□□ -1.38
VPS13D-212ENST00000543766 PRR15LQ9BU68 103 aa6.45□□□□□ -1.38
VPS13D-212ENST00000543766 MGPP08493 103 aa6.45□□□□□ -1.38
VPS13D-212ENST00000543766 COL6A6A6NMZ7 2263 aa6.45□□□□□ -1.38
VPS13D-212ENST00000543766 RNASE4P34096 147 aaKnown RBP6.45□□□□□ -1.38
VPS13D-212ENST00000543766 HAMPP81172 84 aa6.45□□□□□ -1.38
VPS13D-212ENST00000543766 Q8IYB0 196 aa6.45□□□□□ -1.38
VPS13D-212ENST00000543766 SCGB3A1Q96QR1 104 aa6.45□□□□□ -1.38
VPS13D-212ENST00000543766 LINC00846Q9NV44 126 aa6.45□□□□□ -1.38
VPS13D-212ENST00000543766 RELNP78509 3460 aa6.45□□□□□ -1.38
VPS13D-212ENST00000543766 CRPP02741 224 aa6.44□□□□□ -1.38
VPS13D-212ENST00000543766 DEFB124Q8NES8 71 aa6.44□□□□□ -1.38
VPS13D-212ENST00000543766 PKD1L2Q7Z442 2459 aa6.44□□□□□ -1.38
VPS13D-212ENST00000543766 F8VRH5 84 aa6.44□□□□□ -1.38
VPS13D-212ENST00000543766 HIGD2BQ4VC39 106 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms