RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 LINC01006Q8NI28 216 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 LINC01587Q99440 93 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 C1QTNF4Q9BXJ3 329 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 YAE1D1Q9NRH1 226 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 ASH1LQ9NR48 2969 aaKnown RBP7.18□□□□□ -1.26
SS18-205ENST00000542420 P0DMU3 169 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 FAM231AP0DMU4 169 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 FAM231CP0DMU5 169 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 ATP6V0E2Q8NHE4 81 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 AMELXQ99217 191 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 TIMM21Q9BVV7 248 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 CD28P10747 220 aa7.17□□□□□ -1.26
SS18-205ENST00000542420 TTTY13Q9BZ97 58 aa7.17□□□□□ -1.26
SS18-205ENST00000542420 NHP2Q9NX24 153 aaKnown RBP7.17□□□□□ -1.26
SS18-205ENST00000542420 TRBV10-1A0A0K0K1A3 114 aa7.17□□□□□ -1.26
SS18-205ENST00000542420 RPL39P62891 51 aaKnown RBP7.17□□□□□ -1.26
SS18-205ENST00000542420 SMIM20Q8N5G0 67 aa7.17□□□□□ -1.26
SS18-205ENST00000542420 HIST1H4GQ99525 98 aa7.17□□□□□ -1.26
SS18-205ENST00000542420 ANAPC13Q9BS18 74 aa7.17□□□□□ -1.26
SS18-205ENST00000542420 IGLV4-3A0A075B6K6 122 aa7.16□□□□□ -1.26
SS18-205ENST00000542420 ZNF815PA8K554 130 aa7.16□□□□□ -1.26
SS18-205ENST00000542420 LEPROTO15243 131 aa7.16□□□□□ -1.26
SS18-205ENST00000542420 APOMO95445 188 aa7.16□□□□□ -1.26
SS18-205ENST00000542420 TMEM263Q8WUH6 116 aaKnown RBP7.16□□□□□ -1.26
SS18-205ENST00000542420 PLEKHB2Q96CS7 222 aa7.16□□□□□ -1.26
SS18-205ENST00000542420 IGLV1-51P01701 117 aa7.16□□□□□ -1.26
SS18-205ENST00000542420 MRPS36P82909 103 aaKnown RBP7.16□□□□□ -1.26
SS18-205ENST00000542420 CITED1Q99966 193 aa7.16□□□□□ -1.26
SS18-205ENST00000542420 CITED2Q99967 270 aaPredicted RBP7.16□□□□□ -1.26
SS18-205ENST00000542420 VCX2Q9H322 139 aa7.16□□□□□ -1.26
SS18-205ENST00000542420 ZFYVE26Q68DK2 2539 aa7.15□□□□□ -1.26
SS18-205ENST00000542420 TMEM223A0PJW6 202 aa7.15□□□□□ -1.26
SS18-205ENST00000542420 DAZ2Q13117 558 aaKnown RBP7.15□□□□□ -1.27
SS18-205ENST00000542420 RRN3P1Q2M238 152 aa7.15□□□□□ -1.27
SS18-205ENST00000542420 C12orf74Q32Q52 190 aa7.15□□□□□ -1.27
SS18-205ENST00000542420 C1orf158Q8N1D5 194 aa7.15□□□□□ -1.27
SS18-205ENST00000542420 CARD19Q96LW7 228 aa7.15□□□□□ -1.27
SS18-205ENST00000542420 ZFHX3Q15911 3703 aa7.14□□□□□ -1.27
SS18-205ENST00000542420 TRAV4A0A0B4J268 109 aa7.14□□□□□ -1.27
SS18-205ENST00000542420 PROK1P58294 105 aa7.14□□□□□ -1.27
SS18-205ENST00000542420 NDUFA11Q86Y39 141 aa7.14□□□□□ -1.27
SS18-205ENST00000542420 ZNRF2Q8NHG8 242 aa7.14□□□□□ -1.27
SS18-205ENST00000542420 VPS13CQ709C8 3753 aa7.14□□□□□ -1.27
SS18-205ENST00000542420 C16orf74Q96GX8 76 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 CHCHD7Q9BUK0 85 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 POLQO75417 2590 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 A0A0J9YY99 117 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 TINCRA0A1B0GVN0 87 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 J3QQQ9 107 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 ZNF22P17026 224 aaPredicted RBP7.13□□□□□ -1.27
SS18-205ENST00000542420 LGALS3P17931 250 aaKnown RBP7.13□□□□□ -1.27
SS18-205ENST00000542420 SCGB1D4Q6XE38 83 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 FAM19A3Q7Z5A8 133 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 SLC25A29Q8N8R3 303 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 CSDC2Q9Y534 153 aaKnown RBP7.13□□□□□ -1.27
SS18-205ENST00000542420 SORL1Q92673 2214 aa7.13□□□□□ -1.27
SS18-205ENST00000542420 ADARB2-AS1A8MUL3 147 aa7.12□□□□□ -1.27
SS18-205ENST00000542420 UBE2D1P51668 147 aa7.12□□□□□ -1.27
SS18-205ENST00000542420 TMEM170BQ5T4T1 132 aa7.12□□□□□ -1.27
SS18-205ENST00000542420 LYRM7Q5U5X0 104 aa7.12□□□□□ -1.27
SS18-205ENST00000542420 UBE2D4Q9Y2X8 147 aa7.12□□□□□ -1.27
SS18-205ENST00000542420 ITPR3Q14573 2671 aa7.12□□□□□ -1.27
SS18-205ENST00000542420 CCDC179H3BU77 68 aa7.12□□□□□ -1.27
SS18-205ENST00000542420 DAZ4Q86SG3 579 aaKnown RBP7.12□□□□□ -1.27
SS18-205ENST00000542420 OVOL2Q9BRP0 275 aa7.12□□□□□ -1.27
SS18-205ENST00000542420 DAZ3Q9NR90 486 aaKnown RBP7.12□□□□□ -1.27
SS18-205ENST00000542420 TIRAPP58753 221 aa7.11□□□□□ -1.27
SS18-205ENST00000542420 ZFAND6Q6FIF0 208 aa7.11□□□□□ -1.27
SS18-205ENST00000542420 C19orf73Q9NVV2 129 aa7.11□□□□□ -1.27
SS18-205ENST00000542420 XCL2Q9UBD3 114 aa7.11□□□□□ -1.27
SS18-205ENST00000542420 SVEP1Q4LDE5 3571 aa7.11□□□□□ -1.27
SS18-205ENST00000542420 APCP25054 2843 aa7.11□□□□□ -1.27
SS18-205ENST00000542420 H7C423 109 aa7.11□□□□□ -1.27
SS18-205ENST00000542420 HTN1P15515 57 aa7.11□□□□□ -1.27
SS18-205ENST00000542420 ABCA12Q86UK0 2595 aa7.1□□□□□ -1.27
SS18-205ENST00000542420 CELSR2Q9HCU4 2923 aa7.1□□□□□ -1.27
SS18-205ENST00000542420 IGLV5-45A0A087WSX0 123 aa7.1□□□□□ -1.27
SS18-205ENST00000542420 A0A1W2PRX2 142 aa7.1□□□□□ -1.27
SS18-205ENST00000542420 K7EQD1 137 aa7.1□□□□□ -1.27
SS18-205ENST00000542420 RPL36AP83881 106 aaKnown RBP7.1□□□□□ -1.27
SS18-205ENST00000542420 RPL36ALQ969Q0 106 aaKnown RBP7.1□□□□□ -1.27
SS18-205ENST00000542420 FAM104AQ969W3 186 aa7.1□□□□□ -1.27
SS18-205ENST00000542420 SRSF9Q13242 221 aaKnown RBP eCLIP7.1□□□□□ -1.27
SS18-205ENST00000542420 Q6ZSN1 163 aa7.1□□□□□ -1.27
SS18-205ENST00000542420 TEX15Q9BXT5 2789 aa7.1□□□□□ -1.27
SS18-205ENST00000542420 CELSR1Q9NYQ6 3014 aa7.09□□□□□ -1.27
SS18-205ENST00000542420 GAGE12JA6NER3 117 aa7.09□□□□□ -1.27
SS18-205ENST00000542420 GAGE7O76087 117 aa7.09□□□□□ -1.27
SS18-205ENST00000542420 GAGE12FP0CL80 117 aa7.09□□□□□ -1.27
SS18-205ENST00000542420 GAGE12GP0CL81 117 aa7.09□□□□□ -1.27
SS18-205ENST00000542420 GAGE12IP0CL82 117 aa7.09□□□□□ -1.27
SS18-205ENST00000542420 NDUFV3P56181 108 aaKnown RBP7.09□□□□□ -1.27
SS18-205ENST00000542420 GAGE4Q13068 117 aa7.09□□□□□ -1.27
SS18-205ENST00000542420 PPDPFLQ8WWR9 84 aa7.09□□□□□ -1.27
SS18-205ENST00000542420 KMT2BQ9UMN6 2715 aaPredicted RBP7.09□□□□□ -1.27
SS18-205ENST00000542420 IGHV1-58A0A0C4DH39 117 aa7.09□□□□□ -1.28
SS18-205ENST00000542420 TIMM17BO60830 172 aa7.09□□□□□ -1.28
SS18-205ENST00000542420 IGHV3-30P01768 117 aa7.09□□□□□ -1.28
SS18-205ENST00000542420 IGHV3-30-5P0DP03 117 aa7.09□□□□□ -1.28
SS18-205ENST00000542420 SBSPONQ8IVN8 264 aa7.09□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms