RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 KLK9Q9UKQ9 250 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 CADP27708 2225 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 SPTAN1Q13813 2472 aaKnown RBP4.9□□□□□ -1.62
USP28-202ENST00000535607 IGLV4-69A0A075B6H9 119 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 TRBV6-5A0A0K0K1A5 114 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 IGIPA6NJ69 53 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 J3KT08 172 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 IGHV4-39P01824 125 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 CXCL5P42830 114 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 EMP1P54849 157 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 CIRBPQ14011 172 aaKnown RBP4.9□□□□□ -1.63
USP28-202ENST00000535607 C9orf153Q5TBE3 101 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 RNF182Q8N6D2 247 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 C14orf178Q8N769 122 aaPredicted RBP4.9□□□□□ -1.63
USP28-202ENST00000535607 KLHL30-AS1Q8NEE0 82 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 USP9YO00507 2555 aaPredicted RBP4.9□□□□□ -1.63
USP28-202ENST00000535607 NAV3Q8IVL0 2385 aa4.9□□□□□ -1.63
USP28-202ENST00000535607 GCN1Q92616 2671 aaKnown RBP4.89□□□□□ -1.63
USP28-202ENST00000535607 A0A1B0GX51 115 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 A0A1W2PPR1 153 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 TMEM223A0PJW6 202 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 PRAC2D3DTV9 90 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 H7C2G1 150 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 TIMM17BO60830 172 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 NXPH4O95158 308 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 TGFAP01135 160 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 EBI3Q14213 229 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 C15orf32Q32M92 178 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 NSUN5P1Q3KNT7 163 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 TRPT1Q86TN4 253 aaKnown RBP4.89□□□□□ -1.63
USP28-202ENST00000535607 LINC00643Q86TS7 51 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 MUSTN1Q8IVN3 82 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 C3orf22Q8N5N4 141 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 LY6G5BQ8NDX9 201 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 NRGNQ92686 78 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 ODF3Q96PU9 254 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 CCL19Q99731 98 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 CITED2Q99967 270 aaPredicted RBP4.89□□□□□ -1.63
USP28-202ENST00000535607 SPXQ9BT56 116 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 ICOSQ9Y6W8 199 aa4.89□□□□□ -1.63
USP28-202ENST00000535607 CRYBG3Q68DQ2 2970 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 A0A0J9YXY3 114 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 TRBV27A0A0K0K1C4 114 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 FAM223BA6NKX1 122 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 CRYGDP07320 174 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 INAFM2P0DMQ5 153 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 ID1P41134 155 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 POLR2KP53803 58 aaKnown RBP4.88□□□□□ -1.63
USP28-202ENST00000535607 RPS28P62857 69 aaKnown RBP4.88□□□□□ -1.63
USP28-202ENST00000535607 GAGE2AQ6NT46 116 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 FAM223AQ8IWN6 122 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 RPL39LQ96EH5 51 aaKnown RBP4.88□□□□□ -1.63
USP28-202ENST00000535607 OVOL2Q9BRP0 275 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 TIMM21Q9BVV7 248 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 VPREB3Q9UKI3 123 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 S4R3C0 116 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 LRBAP50851 2863 aa4.88□□□□□ -1.63
USP28-202ENST00000535607 TEX49A0A1B0GTD5 131 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 ODF3BA8MYP8 253 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 ATOX1O00244 68 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 LST1O00453 97 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 CRLF1O75462 422 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 NDUFA7O95182 113 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 IGHV3-23P01764 117 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 RNASE4P34096 147 aaKnown RBP4.87□□□□□ -1.63
USP28-202ENST00000535607 NANOS2P60321 138 aaKnown RBP4.87□□□□□ -1.63
USP28-202ENST00000535607 MIAQ16674 131 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 FBN2P35556 2912 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 ARFGEF3Q5TH69 2177 aa4.87□□□□□ -1.63
USP28-202ENST00000535607 TACC2O95359 2948 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 UTP20O75691 2785 aaKnown RBP4.86□□□□□ -1.63
USP28-202ENST00000535607 H7C423 109 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 I3L3M4 83 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 TMEM219Q86XT9 240 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 GPHB5Q86YW7 130 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 APRG1Q8IVJ8 170 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 Q8N6K4 173 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 LINC00526Q96FQ7 95 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 PYGO1Q9Y3Y4 419 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 ABCA4P78363 2273 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 PKDREJQ9NTG1 2253 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 PTPN13Q12923 2485 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 CELSR2Q9HCU4 2923 aa4.86□□□□□ -1.63
USP28-202ENST00000535607 MALRD1Q5VYJ5 2156 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 IGHV7-81A0A0B4J1V7 117 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 FAM236AA0A1B0GUQ0 79 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 FAM236BA0A1B0GV22 79 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 NDUFA4O00483 81 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 CLEC19AQ6UXS0 136 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 VMO1Q7Z5L0 202 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 ZFAND2AQ8N6M9 145 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 DAND5Q8N907 189 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 AMELXQ99217 191 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 CHCHD5Q9BSY4 110 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 CENPEQ02224 2701 aa4.85□□□□□ -1.63
USP28-202ENST00000535607 UNC79Q9P2D8 2635 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 ROS1P08922 2347 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 ICE1Q9Y2F5 2266 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 IGHV1-58A0A0C4DH39 117 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 H3BUA1 57 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms