RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 HSD52Q0P140 79 aa14.84□□□□□ -0.03
USP39-203ENST00000409470 OR11H2Q8NH07 326 aa14.84□□□□□ -0.03
USP39-203ENST00000409470 TRGV2A0A075B6R0 118 aa14.83□□□□□ -0.03
USP39-203ENST00000409470 GAGE12BA1L429 117 aa14.83□□□□□ -0.03
USP39-203ENST00000409470 GAGE7O76087 117 aa14.83□□□□□ -0.03
USP39-203ENST00000409470 GAGE12FP0CL80 117 aa14.83□□□□□ -0.03
USP39-203ENST00000409470 GAGE12GP0CL81 117 aa14.83□□□□□ -0.03
USP39-203ENST00000409470 GAGE12IP0CL82 117 aa14.83□□□□□ -0.03
USP39-203ENST00000409470 COTL1Q14019 142 aa14.83□□□□□ -0.03
USP39-203ENST00000409470 ZMAT5Q9UDW3 170 aaKnown RBP14.83□□□□□ -0.03
USP39-203ENST00000409470 MAPKAPK5-AS1Q8N8E1 139 aa14.83□□□□□ -0.04
USP39-203ENST00000409470 ZNRF2Q8NHG8 242 aa14.83□□□□□ -0.04
USP39-203ENST00000409470 IGLV4-3A0A075B6K6 122 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 K7EQD1 137 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 VCX2Q9H322 139 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 F8P00451 2351 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 FLNBO75369 2602 aaKnown RBP14.82□□□□□ -0.04
USP39-203ENST00000409470 TRBV25-1A0A075B6N4 114 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 E9PLD3 99 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 OVOL2Q9BRP0 275 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 CHCHD7Q9BUK0 85 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 HIGD1BQ9P298 99 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 PYGO1Q9Y3Y4 419 aa14.82□□□□□ -0.04
USP39-203ENST00000409470 TENM1Q9UKZ4 2725 aa14.81□□□□□ -0.04
USP39-203ENST00000409470 TRBV7-3A0A075B6L6 115 aa14.81□□□□□ -0.04
USP39-203ENST00000409470 TRBV10-1A0A0K0K1A3 114 aa14.8□□□□□ -0.04
USP39-203ENST00000409470 HERVK_113P61574 105 aa14.8□□□□□ -0.04
USP39-203ENST00000409470 RPL36AP83881 106 aaKnown RBP14.8□□□□□ -0.04
USP39-203ENST00000409470 RPL36ALQ969Q0 106 aaKnown RBP14.8□□□□□ -0.04
USP39-203ENST00000409470 PRADC1Q9BSG0 188 aa14.8□□□□□ -0.04
USP39-203ENST00000409470 CHAC1Q9BUX1 264 aa14.8□□□□□ -0.04
USP39-203ENST00000409470 VWFP04275 2813 aa14.8□□□□□ -0.04
USP39-203ENST00000409470 SEC11AP67812 179 aa14.8□□□□□ -0.04
USP39-203ENST00000409470 TMEM170BQ5T4T1 132 aa14.8□□□□□ -0.04
USP39-203ENST00000409470 Q6ZVH6 145 aa14.8□□□□□ -0.04
USP39-203ENST00000409470 ATRQ13535 2644 aa14.79□□□□□ -0.04
USP39-203ENST00000409470 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.79□□□□□ -0.04
USP39-203ENST00000409470 IGKV2-29A2NJV5 120 aaPredicted RBP14.79□□□□□ -0.04
USP39-203ENST00000409470 SLC25A29Q8N8R3 303 aa14.79□□□□□ -0.04
USP39-203ENST00000409470 ORAOV1Q8WV07 137 aa14.79□□□□□ -0.04
USP39-203ENST00000409470 CEMP1Q6PRD7 247 aaPredicted RBP14.78□□□□□ -0.04
USP39-203ENST00000409470 COX11Q9Y6N1 276 aa14.78□□□□□ -0.04
USP39-203ENST00000409470 TEP1Q99973 2627 aaKnown RBP14.78□□□□□ -0.04
USP39-203ENST00000409470 MYMXA0A1B0GTQ4 84 aa14.77□□□□□ -0.04
USP39-203ENST00000409470 SPANXA1Q9NS26 97 aa14.77□□□□□ -0.04
USP39-203ENST00000409470 NFE4Q86UQ8 179 aa14.76□□□□□ -0.05
USP39-203ENST00000409470 GAGE12JA6NER3 117 aa14.76□□□□□ -0.05
USP39-203ENST00000409470 CIDEAO60543 219 aa14.76□□□□□ -0.05
USP39-203ENST00000409470 GAGE1Q13065 139 aa14.76□□□□□ -0.05
USP39-203ENST00000409470 GAGE4Q13068 117 aa14.76□□□□□ -0.05
USP39-203ENST00000409470 GAGE5Q13069 117 aa14.76□□□□□ -0.05
USP39-203ENST00000409470 GAGE13Q4V321 117 aa14.76□□□□□ -0.05
USP39-203ENST00000409470 UBE2D4Q9Y2X8 147 aa14.76□□□□□ -0.05
USP39-203ENST00000409470 TAX1BP3O14907 124 aa14.75□□□□□ -0.05
USP39-203ENST00000409470 NPSP0C0P6 89 aa14.75□□□□□ -0.05
USP39-203ENST00000409470 LINC00469Q8N7U9 141 aa14.75□□□□□ -0.05
USP39-203ENST00000409470 TRGV4A0A0C4DH28 118 aa14.75□□□□□ -0.05
USP39-203ENST00000409470 A6NDN8 102 aa14.75□□□□□ -0.05
USP39-203ENST00000409470 DAZ4Q86SG3 579 aaKnown RBP14.75□□□□□ -0.05
USP39-203ENST00000409470 AMELXQ99217 191 aa14.75□□□□□ -0.05
USP39-203ENST00000409470 DAZ3Q9NR90 486 aaKnown RBP14.75□□□□□ -0.05
USP39-203ENST00000409470 GCSHP23434 173 aa14.74□□□□□ -0.05
USP39-203ENST00000409470 CRYBA4P53673 196 aa14.74□□□□□ -0.05
USP39-203ENST00000409470 RNASE13Q5GAN3 156 aaKnown RBP14.74□□□□□ -0.05
USP39-203ENST00000409470 WFDC9Q8NEX5 89 aa14.74□□□□□ -0.05
USP39-203ENST00000409470 FAM104AQ969W3 186 aa14.74□□□□□ -0.05
USP39-203ENST00000409470 A0A0J9YXV3 536 aa14.73□□□□□ -0.05
USP39-203ENST00000409470 ZNF815PA8K554 130 aa14.73□□□□□ -0.05
USP39-203ENST00000409470 UBE2D3P61077 147 aa14.73□□□□□ -0.05
USP39-203ENST00000409470 UBE2D2P62837 147 aa14.73□□□□□ -0.05
USP39-203ENST00000409470 TRBV6-4A0A1B0GX49 114 aa14.72□□□□□ -0.05
USP39-203ENST00000409470 SMIM9A6NGZ8 99 aa14.71□□□□□ -0.05
USP39-203ENST00000409470 DEFB130BP0DP73 79 aa14.71□□□□□ -0.05
USP39-203ENST00000409470 DEFB130AP0DP74 79 aa14.71□□□□□ -0.05
USP39-203ENST00000409470 Q6ZUT4 128 aa14.71□□□□□ -0.05
USP39-203ENST00000409470 X6R8D5 127 aa14.71□□□□□ -0.05
USP39-203ENST00000409470 ZNF22P17026 224 aaPredicted RBP14.7□□□□□ -0.06
USP39-203ENST00000409470 APOC4P55056 127 aa14.7□□□□□ -0.06
USP39-203ENST00000409470 DGAT2L7PQ6IED9 249 aa14.7□□□□□ -0.06
USP39-203ENST00000409470 KIR2DL5BQ8NHK3 375 aa14.7□□□□□ -0.06
USP39-203ENST00000409470 TMEM223A0PJW6 202 aa14.69□□□□□ -0.06
USP39-203ENST00000409470 FHL2Q14192 279 aa14.69□□□□□ -0.06
USP39-203ENST00000409470 SCGB1D4Q6XE38 83 aa14.69□□□□□ -0.06
USP39-203ENST00000409470 CEND1Q8N111 149 aa14.69□□□□□ -0.06
USP39-203ENST00000409470 HIST1H4GQ99525 98 aa14.69□□□□□ -0.06
USP39-203ENST00000409470 LOC100131303A0A0U1RQF7 123 aa14.68□□□□□ -0.06
USP39-203ENST00000409470 PTTG1IPP53801 180 aa14.68□□□□□ -0.06
USP39-203ENST00000409470 FXYD2P54710 66 aa14.68□□□□□ -0.06
USP39-203ENST00000409470 TAL2Q16559 108 aa14.68□□□□□ -0.06
USP39-203ENST00000409470 DEFB135Q30KP9 77 aa14.68□□□□□ -0.06
USP39-203ENST00000409470 MRPS36P82909 103 aaKnown RBP14.68□□□□□ -0.06
USP39-203ENST00000409470 NTM-AS1Q6ZSK4 140 aa14.68□□□□□ -0.06
USP39-203ENST00000409470 TIMM21Q9BVV7 248 aa14.68□□□□□ -0.06
USP39-203ENST00000409470 KRTAP24-1Q3LI83 254 aa14.67□□□□□ -0.06
USP39-203ENST00000409470 K7EP13 123 aa14.66□□□□□ -0.06
USP39-203ENST00000409470 LGALS3P17931 250 aaKnown RBP14.66□□□□□ -0.06
USP39-203ENST00000409470 TSPEAR-AS2P59090 65 aa14.66□□□□□ -0.06
USP39-203ENST00000409470 TM2D2Q9BX73 214 aa14.66□□□□□ -0.06
USP39-203ENST00000409470 H3BRM9 83 aa14.66□□□□□ -0.06
USP39-203ENST00000409470 J3QQQ9 107 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms