RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 COL6A6A6NMZ7 2263 aa3.65□□□□□ -1.83
PCDH9-201ENST00000377861 MTCL1Q9Y4B5 1905 aaKnown RBP3.65□□□□□ -1.83
PCDH9-201ENST00000377861 CADP27708 2225 aa3.65□□□□□ -1.83
PCDH9-201ENST00000377861 RNASE3P12724 160 aaKnown RBP3.65□□□□□ -1.83
PCDH9-201ENST00000377861 ZFP36P26651 326 aaKnown RBP3.65□□□□□ -1.83
PCDH9-201ENST00000377861 DIRC1Q969H9 104 aa3.65□□□□□ -1.83
PCDH9-201ENST00000377861 A0A0J9YWU9 116 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 IGHV4-30-4P0DP06 118 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 NCOR2Q9Y618 2525 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 RNF223E7ERA6 249 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 TCL1BO95988 128 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 HIGD2AQ9BW72 106 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 DOCK11Q5JSL3 2073 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 TCF20Q9UGU0 1960 aaKnown RBP3.64□□□□□ -1.83
PCDH9-201ENST00000377861 GATA1P15976 413 aaPredicted RBP3.64□□□□□ -1.83
PCDH9-201ENST00000377861 LY6EQ16553 131 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 CD24P25063 80 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 UBE2D4Q9Y2X8 147 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 GTF3C1Q12789 2109 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 TRPM7Q96QT4 1865 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 XCL2Q9UBD3 114 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 SERP1Q9Y6X1 66 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 J3KRW8 73 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 C5orf38Q86SI9 138 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 ZNF106Q9H2Y7 1883 aaKnown RBP3.64□□□□□ -1.83
PCDH9-201ENST00000377861 DIAPH2-AS1Q14236 149 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 C1orf229Q6ZS94 237 aaPredicted RBP3.64□□□□□ -1.83
PCDH9-201ENST00000377861 TP53AIP1Q9HCN2 124 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 LINC00527Q9UJ94 153 aa3.64□□□□□ -1.83
PCDH9-201ENST00000377861 BPY2O14599 106 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 LYNX1G3V0Z9 82 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 LYNX1P0DP58 116 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 HAMPP81172 84 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 FHL3Q13643 280 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 ASPHD1Q5U4P2 390 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 LIMD2Q9BT23 127 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 SS18L2Q9UHA2 77 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 TRIAP1O43715 76 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 LINC00242Q5T6M2 205 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 NDPQ00604 133 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 Q6ZSV7 163 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 IGHV3OR16-12A0A075B7B8 117 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 PRAC2D3DTV9 90 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 RNASE1P07998 156 aaKnown RBP3.63□□□□□ -1.83
PCDH9-201ENST00000377861 FAM208BQ5VWN6 2430 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 DOCK10Q96BY6 2186 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 LOC110117498A0A087WWA1 95 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 GVQW2A0A096LPI5 108 aaPredicted RBP3.63□□□□□ -1.83
PCDH9-201ENST00000377861 hDV103S1A0JD37 113 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 LINC00315P59091 139 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 NRGNQ92686 78 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 IGHV3OR16-13A0A075B7E8 117 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 IGHV3-74A0A0B4J1X5 117 aa3.63□□□□□ -1.83
PCDH9-201ENST00000377861 IGKV3-20P01619 116 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 CDKN2A-AS1Q9UH64 79 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 LELP1Q5T871 98 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 IGHV3-23P01764 117 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 A0A096LNJ9 63 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 TEX49A0A1B0GTD5 131 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 RPL37AP61513 92 aaKnown RBP3.62□□□□□ -1.83
PCDH9-201ENST00000377861 C2CD3Q4AC94 2353 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 DEFB112Q30KQ8 113 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 FAM236AA0A1B0GUQ0 79 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 FAM236BA0A1B0GV22 79 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 UBE2AP49459 152 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 BLCAPP62952 87 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 LRRK2Q5S007 2527 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 GNLYP22749 145 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 NOP10Q9NPE3 64 aaKnown RBP3.62□□□□□ -1.83
PCDH9-201ENST00000377861 FRMPD3Q5JV73 1810 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 C1orf195Q5TG92 126 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 MIR7-3HGQ8N6C7 128 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 Q8N814 137 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 ANAPC1Q9H1A4 1944 aa3.62□□□□□ -1.83
PCDH9-201ENST00000377861 MSMPQ1L6U9 139 aa3.61□□□□□ -1.83
PCDH9-201ENST00000377861 NTM-AS1Q6ZSK4 140 aa3.61□□□□□ -1.83
PCDH9-201ENST00000377861 NUP210Q8TEM1 1887 aaPredicted RBP3.61□□□□□ -1.83
PCDH9-201ENST00000377861 IGHV3-49A0A0A0MS15 119 aa3.61□□□□□ -1.83
PCDH9-201ENST00000377861 IGHV4-61A0A0C4DH41 118 aa3.61□□□□□ -1.83
PCDH9-201ENST00000377861 MAPKAPK5-AS1Q8N8E1 139 aa3.61□□□□□ -1.83
PCDH9-201ENST00000377861 PHF3Q92576 2039 aaKnown RBP3.61□□□□□ -1.83
PCDH9-201ENST00000377861 NOTCH3Q9UM47 2321 aa3.61□□□□□ -1.83
PCDH9-201ENST00000377861 F8W735 103 aaPredicted RBP3.61□□□□□ -1.83
PCDH9-201ENST00000377861 BRD3OSQ6XYD6 125 aa3.61□□□□□ -1.83
PCDH9-201ENST00000377861 RPL39LQ96EH5 51 aaKnown RBP3.61□□□□□ -1.83
PCDH9-201ENST00000377861 SPATA3Q8NHX4 192 aa3.61□□□□□ -1.83
PCDH9-201ENST00000377861 COX7BP24311 80 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 IGLV4-69A0A075B6H9 119 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 WIPF1O43516 503 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 PRO0461Q9UI25 63 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 IGHV3OR16-9A0A0B4J2B5 98 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 ELOF1P60002 83 aaKnown RBP3.6□□□□□ -1.83
PCDH9-201ENST00000377861 USP17L23D6RBM5 183 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 ZNF706Q9Y5V0 76 aaPredicted RBP3.6□□□□□ -1.83
PCDH9-201ENST00000377861 UNQ9165/PRO28630Q6UXU0 137 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 FRMD6-AS1P0C7T7 363 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 K7ERJ3 54 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 PKDREJQ9NTG1 2253 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 TNCP24821 2201 aa3.6□□□□□ -1.83
PCDH9-201ENST00000377861 NCOA6Q14686 2063 aaPredicted RBP3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms